{Stage:"initial check",Status:"Started"}
{Stage:"initial check",Status:"Done"}
{Stage:"FASTA to CMAP conversion",Status:"Started"}
{Stage:"FASTA to CMAP conversion",Status:"Done"}
{Stage:"FASTA header to CMAP id conversion in FASTA file",Status:"Started"}
{Stage:"FASTA header to CMAP id conversion in FASTA file",Status:"Done"}
{Stage:"align0",Status:"Started"}
{Stage:"align0",Status:"Done"}
{Stage:"Rescale BioNano maps",Status:"Started"}
{Stage:"Rescale BioNano maps",Status:"Done"}
{Stage:"align1",Status:"Started"}
{Stage:"align1",Status:"Done"}
{Stage:"conflict detection",Status:"Started"}
{Stage:"conflict detection",Status:"Done"}
{Stage:"conflict resolution",Status:"Started"}
{Stage:"conflict resolution",Status:"Done"}
{Stage:"pairwise merge",Status:"Started"}
{Stage:"pairwise merge",Status:"Done"}
{Stage:"extract sequences in hybrid scaffold pairmerge step",Status:"Started"}
{Stage:"align sequences to hybrid scaffolds",Status:"Done"}
{Stage:"align used BioNano maps to hybrid scaffolds pairmerge step",Status:"Started"}
{Stage:"align Bionano genome maps to hybrid scaffolds",Status:"Done"}
{Stage:"combine hybrid scaffolds with left over sequences",Status:"Started"}
{Stage:"combine hybrid scaffolds with left over sequences",Status:"Done"}
{Stage:"combine hybrid scaffolds with left over BioNano maps",Status:"Started"}
{Stage:"combine hybrid scaffolds with left over BioNano maps",Status:"Done"}
{Stage:"AGP and FASTA generation",Status:"Started"}
{Stage:"AGP and FASTA generation",Status:"Done"}
{Stage:"statistical report generation",Status:"Started"}
{Stage:"statistical report generation",Status:"Done"}