# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
0	ref	89	17056094	-1	+	okay	okay	exclude	qry	19	25321262	-1	+	okay	okay	okay
0	ref	51	5549320	-1	+	okay	okay	exclude	qry	2	1474827	-1	+	okay	okay	okay
0	ref	72	19127816	-1	+	okay	okay	exclude	qry	19	27395097	-1	+	okay	okay	okay
0	ref	98	-1	5036458	+	okay	okay	exclude	qry	20	-1	5064831	+	okay	okay	okay
0	ref	102	-1	5383318	+	okay	okay	exclude	qry	2	-1	1307982	+	okay	okay	okay
11	ref	8	5379005	-1	+	cut	okay	okay	qry	2	1303617	-1	+	okay	okay	okay
0	ref	115	13830511	-1	+	okay	okay	exclude	qry	19	22087444	-1	+	okay	okay	okay
10	ref	8	-1	5265588	+	okay	cut	okay	qry	20	-1	5292478	+	okay	okay	okay