2022-11-14 19:05:13,151:INFO:De novo Assembly pipeline configuration 2022-11-14 19:05:13,151:INFO:Log file: /home/bionano/access/local/jobs/10230251/output/exp_pipelineReport.txt 2022-11-14 19:05:13,151:INFO:memory log file: /home/bionano/access/local/jobs/10230251/output/memory_log.txt 2022-11-14 19:05:13,151:INFO:Configuring the pipeline 2022-11-14 19:05:13,151:INFO:Initializing parameter values 2022-11-14 19:05:13,151:INFO:vap_conda=None, conda_source=~/miniconda/etc/profile.d/conda.sh 2022-11-14 19:05:13,151:INFO:Checking consistency of passed arguments 2022-11-14 19:05:13,151:INFO:Checking inputs 2022-11-14 19:05:13,152:INFO:Setting up the file structure for the pipeline 2022-11-14 19:05:14,235:INFO:Init the status log file: /home/bionano/access/local/jobs/10230251/output/status.xml 2022-11-14 19:05:14,280:INFO:Command used: /home/bionano/tools/access/1.0/../../pipeline/1.0/Pipeline/1.0/pipelineCL.py -l /home/bionano/access/local/jobs/10230251/output -t /home/bionano/tools/access/1.0/../../pipeline/1.0/RefAligner/1.0 -C /home/bionano/tools/access/1.0/../../pipeline/1.0/Pipeline/1.0/clusterArguments_saphyr_supermicro.xml -b /home/bionano/access/local/jobs/10230251/RawMolecules.filtered.bnx -y -d -U -i 5 -F 1 -W 1 -c 1 -a /home/bionano/access/share/jobs/10230251/optArguments_nonhaplotype_noES_noCut_DLE1_saphyr.xml -r /home/bionano/access/share/jobs/10230251/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -R 0.5 --compute-confidence non_human --species-reference other -f 0.08 -J 56 -j 56 -jp 48 -je 48 -Tn 56 -N 4 -json {"jobID":"jobs+10230251+startPipeline","toolsVer":"1.7.96","solveVer":"Solve3.7_03302022_283"} --docker -NoExtCharCheck -NoCheckFiles 2022-11-14 19:05:14,281:INFO:/home/bionano/tools/access/1.0/../../pipeline/1.0/Pipeline/1.0/pipelineCL.py -l /home/bionano/access/local/jobs/10230251/output -t /home/bionano/tools/access/1.0/../../pipeline/1.0/RefAligner/1.0 -C /home/bionano/tools/access/1.0/../../pipeline/1.0/Pipeline/1.0/clusterArguments_saphyr_supermicro.xml -b /home/bionano/access/local/jobs/10230251/RawMolecules.filtered.bnx -y -d -U -i 5 -F 1 -W 1 -c 1 -a /home/bionano/access/share/jobs/10230251/optArguments_nonhaplotype_noES_noCut_DLE1_saphyr.xml -r /home/bionano/access/share/jobs/10230251/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -R 0.5 --compute-confidence non_human --species-reference other -f 0.08 -J 56 -j 56 -jp 48 -je 48 -Tn 56 -N 4 -json {"jobID":"jobs+10230251+startPipeline","toolsVer":"1.7.96","solveVer":"Solve3.7_03302022_283"} --docker -NoExtCharCheck -NoCheckFiles 2022-11-14 19:05:14,281:INFO:Checking cluster availability 2022-11-14 19:05:14,282:INFO:Building stage information for roughAssembly 2022-11-14 19:05:14,282:INFO:Parsing the file of arguments: /home/bionano/tools/pipeline/1.0/Pipeline/1.0/clusterArguments_saphyr_supermicro.xml 2022-11-14 19:05:14,284:INFO:Parsing the file of arguments: /home/bionano/access/share/jobs/10230251/optArguments_nonhaplotype_noES_noCut_DLE1_saphyr.xml 2022-11-14 19:05:14,298:INFO:Checking dependencies 2022-11-14 19:05:14,311:INFO:Running the de novo Assembly pipeline 2022-11-14 19:05:14,330:INFO:Hostname: saphyr1a 2022-11-14 19:05:14,331:INFO:Tools Version: 1.7.96 2022-11-14 19:05:14,331:INFO:Solve Version: Solve3.7_03302022_283 2022-11-14 19:05:14,331:INFO:Pipeline Version: 3.7.1 2022-11-14 19:05:14,331:INFO:RefAligner Version: 12642 2022-11-14 19:05:14,331:INFO:Informatics Report Version: 2.3.0 2022-11-14 19:05:14,333:INFO:Assembly ID: jobs+10230251+startPipeline 2022-11-14 19:05:14,333:INFO:Pipeline start time: Mon Nov 14 19:05:14 2022 2022-11-14 19:05:14,334:INFO:checkScanScaling: autoNoise= False 2022-11-14 19:05:14,334:INFO:Not performing autoNoise (see -y): setting doScanScale = False, hence not using _rescaled.bnx for BNX splits 2022-11-14 19:05:14,334:INFO:************************* Executing stage 1: AutoNoise + SplitBNX ************************* 2022-11-14 19:05:14,335:INFO:Molecule statistics 2022-11-14 19:05:17,010:INFO:Molecule Stats (/home/bionano/access/local/jobs/10230251/output/all.bnx): Total number of molecules: 783488 Total length (Mbp) : 280921.525 Average length (kbp) : 358.552 Molecule N50 (kbp) : 344.538 Label density (/100kb) : 17.989 2022-11-14 19:05:17,011:INFO:Generating jobs for SortBNX 2022-11-14 19:05:17,011:INFO:Sorting /home/bionano/access/local/jobs/10230251/output/all.bnx into /home/bionano/access/local/jobs/10230251/output/all_sorted 2022-11-14 19:05:17,016:INFO:Supported contact strings: session=saphyr1a.997.1985559562 2022-11-14 19:05:17,016:INFO:Supported DRM systems: SGE 8.1.9 2022-11-14 19:05:17,016:INFO:Supported DRMAA implementations: SGE 8.1.9 2022-11-14 19:05:17,017:INFO:DRMAA Version 1.0 2022-11-14 19:05:17,017:INFO: Starting Multi-Threaded Process: SortBNX 2022-11-14 19:05:17,017:INFO:conda_env=None,conda_source=None 2022-11-14 19:05:17,017:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:05:17,038:INFO: START 1: SortBNX, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 19:06:42,431:INFO: STOP 1: SortBNX, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 1.42m RunTime= 0h 1.39m CPUload=118% bionano2a 2022-11-14 19:06:42,433:INFO: Finished Multi-Threaded Process: SortBNX 2022-11-14 19:06:42,434:INFO: SortBNX completed in: 85.4s Result Found Completed 1 jobs on 56 threads Clock time: 0h 1.42m CPU time : 0h 1.42m Begin machine parsable segment for: SortBNX time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_SortBNX 85.39300 89.96 8.56 1:23.43 118% 4377456 Mon Nov 14 13:19:45 CST 2022 2022-11-14 19:06:42,434:INFO:Generating jobs for SplitBNX 2022-11-14 19:06:46,939:INFO:calculate_n_pairwise: Sorted and filtered file has 781495 molecules, 51308326.0 sites, 280234221043.0 bp length total. Gscale= 1.00, blocks= 19 -> 20 (N=4) 2022-11-14 19:06:46,939:INFO:Changing number of blocks from 4 to 20 2022-11-14 19:06:46,939:INFO:Splitting BNX 2022-11-14 19:06:46,939:INFO:Splitting bnx file: /home/bionano/access/local/jobs/10230251/output/all_sorted.bnx 2022-11-14 19:06:46,940:INFO:Running jobs for SplitBNX 2022-11-14 19:06:46,940:INFO: Starting Multi-Threaded Process: SplitBNX 2022-11-14 19:06:46,940:INFO:conda_env=None,conda_source=None 2022-11-14 19:06:46,940:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:06:46,978:INFO: START 1: SplitBNX, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 19:08:19,301:INFO: STOP 1: SplitBNX, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 1.54m RunTime= 0h 1.53m CPUload=108% bionano2a 2022-11-14 19:08:19,301:INFO: Finished Multi-Threaded Process: SplitBNX 2022-11-14 19:08:19,302:INFO: SplitBNX completed in: 92.3s Result Found Completed 1 jobs on 56 threads Clock time: 0h 1.54m CPU time : 0h 1.54m Begin machine parsable segment for: SplitBNX time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_SplitBNX 92.32248 89.63 9.53 1:31.69 108% 4381124 Mon Nov 14 13:21:22 CST 2022 2022-11-14 19:08:19,303:INFO:After waiting 0 seconds found: /home/bionano/access/local/jobs/10230251/output/all_1_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_2_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_3_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_4_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_5_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_6_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_7_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_8_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_9_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_10_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_11_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_12_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_13_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_14_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_15_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_16_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_17_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_18_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_19_of_20.bnx, /home/bionano/access/local/jobs/10230251/output/all_20_of_20.bnx 2022-11-14 19:08:19,303:INFO:************************* Executing stage 2: Pairwise + Alignmolvref ************************* 2022-11-14 19:08:19,313:INFO:Pairwise ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_20.bnx -o /home/bionano/access/local/jobs/10230251/output/align/exppairwise1of210 -usecolor 1 -FP 2.0 -FN 0.10 -sf 0.12 -sd 0.0 -sr 0.03 -res 3.1 -resSD 0.75 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -mres 0.9 -S 0.1 -A 8 -HashMaxHits 200 -MaxSF 0.15 -MinFN 0.10 -MinFP 1.0 -MinSR 0.025 -MaxSE 0.5 -outlier 0.001 -outlierMax 40. -endoutlier 0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -PVres 2 -alignscore -align_format 1 -maptype 0 -f -hashgen 5 4 2.2 1.2 0.05 3.0 1 1 -hash -insertThreads 4 -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -T 1e-11 -minlen 180.0 -stdout -stderr -maxthreads 48 -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 19:08:19,313:INFO:Running jobs for Pairwise 2022-11-14 19:08:19,314:INFO: Starting Multi-Threaded Process: Pairwise 2022-11-14 19:08:19,314:INFO:conda_env=None,conda_source=None 2022-11-14 19:08:19,314:INFO: Running 210 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:08:19,670:INFO: START 1: Pairwise 1 of 2, 48 Thr, 1 R, 210 T, 0 F, 209 Q 2022-11-14 19:08:19,695:INFO: START 2: Pairwise 2 of 2, 48 Thr, 2 R, 210 T, 0 F, 208 Q 2022-11-14 19:08:19,720:INFO: START 3: Pairwise 3 of 2, 48 Thr, 3 R, 210 T, 0 F, 207 Q 2022-11-14 19:08:19,745:INFO: START 4: Pairwise 4 of 2, 48 Thr, 4 R, 210 T, 0 F, 206 Q 2022-11-14 19:08:19,769:INFO: START 5: Pairwise 5 of 2, 48 Thr, 5 R, 210 T, 0 F, 205 Q 2022-11-14 19:08:19,794:INFO: START 6: Pairwise 6 of 2, 48 Thr, 6 R, 210 T, 0 F, 204 Q 2022-11-14 19:08:19,819:INFO: START 7: Pairwise 7 of 2, 48 Thr, 7 R, 210 T, 0 F, 203 Q 2022-11-14 19:08:19,844:INFO: START 8: Pairwise 8 of 2, 48 Thr, 8 R, 210 T, 0 F, 202 Q 2022-11-14 19:08:19,868:INFO: START 9: Pairwise 9 of 2, 48 Thr, 9 R, 210 T, 0 F, 201 Q 2022-11-14 19:08:19,893:INFO: START 10: Pairwise 10 of , 48 Thr, 10 R, 210 T, 0 F, 200 Q 2022-11-14 19:08:19,918:INFO: START 11: Pairwise 11 of , 48 Thr, 11 R, 210 T, 0 F, 199 Q 2022-11-14 19:08:19,942:INFO: START 12: Pairwise 12 of , 48 Thr, 12 R, 210 T, 0 F, 198 Q 2022-11-14 19:08:19,967:INFO: START 13: Pairwise 13 of , 48 Thr, 13 R, 210 T, 0 F, 197 Q 2022-11-14 19:08:19,997:INFO: START 14: Pairwise 14 of , 48 Thr, 14 R, 210 T, 0 F, 196 Q 2022-11-14 19:08:20,023:INFO: START 15: Pairwise 15 of , 48 Thr, 15 R, 210 T, 0 F, 195 Q 2022-11-14 19:08:20,047:INFO: START 16: Pairwise 16 of , 48 Thr, 16 R, 210 T, 0 F, 194 Q 2022-11-14 19:08:20,072:INFO: START 17: Pairwise 17 of , 48 Thr, 17 R, 210 T, 0 F, 193 Q 2022-11-14 19:08:20,099:INFO: START 18: Pairwise 18 of , 48 Thr, 18 R, 210 T, 0 F, 192 Q 2022-11-14 19:08:20,124:INFO: START 19: Pairwise 19 of , 48 Thr, 19 R, 210 T, 0 F, 191 Q 2022-11-14 19:08:20,148:INFO: START 20: Pairwise 20 of , 48 Thr, 20 R, 210 T, 0 F, 190 Q 2022-11-14 19:08:20,173:INFO: START 21: Pairwise 21 of , 48 Thr, 21 R, 210 T, 0 F, 189 Q 2022-11-14 19:08:20,212:INFO: START 22: Pairwise 22 of , 48 Thr, 22 R, 210 T, 0 F, 188 Q 2022-11-14 19:08:20,237:INFO: START 23: Pairwise 23 of , 48 Thr, 23 R, 210 T, 0 F, 187 Q 2022-11-14 19:08:20,262:INFO: START 24: Pairwise 24 of , 48 Thr, 24 R, 210 T, 0 F, 186 Q 2022-11-14 19:08:20,287:INFO: START 25: Pairwise 25 of , 48 Thr, 25 R, 210 T, 0 F, 185 Q 2022-11-14 19:08:20,311:INFO: START 26: Pairwise 26 of , 48 Thr, 26 R, 210 T, 0 F, 184 Q 2022-11-14 19:08:20,336:INFO: START 27: Pairwise 27 of , 48 Thr, 27 R, 210 T, 0 F, 183 Q 2022-11-14 19:08:20,370:INFO: START 28: Pairwise 28 of , 48 Thr, 28 R, 210 T, 0 F, 182 Q 2022-11-14 19:08:20,394:INFO: START 29: Pairwise 29 of , 48 Thr, 29 R, 210 T, 0 F, 181 Q 2022-11-14 19:08:20,419:INFO: START 30: Pairwise 30 of , 48 Thr, 30 R, 210 T, 0 F, 180 Q 2022-11-14 19:08:20,469:INFO: START 31: Pairwise 31 of , 48 Thr, 31 R, 210 T, 0 F, 179 Q 2022-11-14 19:08:20,494:INFO: START 32: Pairwise 32 of , 48 Thr, 32 R, 210 T, 0 F, 178 Q 2022-11-14 19:08:20,519:INFO: START 33: Pairwise 33 of , 48 Thr, 33 R, 210 T, 0 F, 177 Q 2022-11-14 19:08:20,562:INFO: START 34: Pairwise 34 of , 48 Thr, 34 R, 210 T, 0 F, 176 Q 2022-11-14 19:08:20,587:INFO: START 35: Pairwise 35 of , 48 Thr, 35 R, 210 T, 0 F, 175 Q 2022-11-14 19:08:20,612:INFO: START 36: Pairwise 36 of , 48 Thr, 36 R, 210 T, 0 F, 174 Q 2022-11-14 19:08:20,637:INFO: START 37: Pairwise 37 of , 48 Thr, 37 R, 210 T, 0 F, 173 Q 2022-11-14 19:08:20,662:INFO: START 38: Pairwise 38 of , 48 Thr, 38 R, 210 T, 0 F, 172 Q 2022-11-14 19:08:20,686:INFO: START 39: Pairwise 39 of , 48 Thr, 39 R, 210 T, 0 F, 171 Q 2022-11-14 19:08:20,711:INFO: START 40: Pairwise 40 of , 48 Thr, 40 R, 210 T, 0 F, 170 Q 2022-11-14 19:08:20,735:INFO: START 41: Pairwise 41 of , 48 Thr, 41 R, 210 T, 0 F, 169 Q 2022-11-14 19:08:20,760:INFO: START 42: Pairwise 42 of , 48 Thr, 42 R, 210 T, 0 F, 168 Q 2022-11-14 19:08:20,785:INFO: START 43: Pairwise 43 of , 48 Thr, 43 R, 210 T, 0 F, 167 Q 2022-11-14 19:08:20,810:INFO: START 44: Pairwise 44 of , 48 Thr, 44 R, 210 T, 0 F, 166 Q 2022-11-14 19:08:20,835:INFO: START 45: Pairwise 45 of , 48 Thr, 45 R, 210 T, 0 F, 165 Q 2022-11-14 19:08:20,859:INFO: START 46: Pairwise 46 of , 48 Thr, 46 R, 210 T, 0 F, 164 Q 2022-11-14 19:08:20,884:INFO: START 47: Pairwise 47 of , 48 Thr, 47 R, 210 T, 0 F, 163 Q 2022-11-14 19:08:20,908:INFO: START 48: Pairwise 48 of , 48 Thr, 48 R, 210 T, 0 F, 162 Q 2022-11-14 19:08:20,932:INFO: START 49: Pairwise 49 of , 48 Thr, 49 R, 210 T, 0 F, 161 Q 2022-11-14 19:08:20,975:INFO: START 50: Pairwise 50 of , 48 Thr, 50 R, 210 T, 0 F, 160 Q 2022-11-14 19:08:21,000:INFO: START 51: Pairwise 51 of , 48 Thr, 51 R, 210 T, 0 F, 159 Q 2022-11-14 19:08:21,025:INFO: START 52: Pairwise 52 of , 48 Thr, 52 R, 210 T, 0 F, 158 Q 2022-11-14 19:08:21,050:INFO: START 53: Pairwise 53 of , 48 Thr, 53 R, 210 T, 0 F, 157 Q 2022-11-14 19:08:21,075:INFO: START 54: Pairwise 54 of , 48 Thr, 54 R, 210 T, 0 F, 156 Q 2022-11-14 19:08:21,100:INFO: START 55: Pairwise 55 of , 48 Thr, 55 R, 210 T, 0 F, 155 Q 2022-11-14 19:08:21,125:INFO: START 56: Pairwise 56 of , 48 Thr, 56 R, 210 T, 0 F, 154 Q 2022-11-14 19:08:21,149:INFO: START 57: Pairwise 57 of , 48 Thr, 57 R, 210 T, 0 F, 153 Q 2022-11-14 19:08:21,174:INFO: START 58: Pairwise 58 of , 48 Thr, 58 R, 210 T, 0 F, 152 Q 2022-11-14 19:08:21,200:INFO: START 59: Pairwise 59 of , 48 Thr, 59 R, 210 T, 0 F, 151 Q 2022-11-14 19:08:21,225:INFO: START 60: Pairwise 60 of , 48 Thr, 60 R, 210 T, 0 F, 150 Q 2022-11-14 19:08:21,250:INFO: START 61: Pairwise 61 of , 48 Thr, 61 R, 210 T, 0 F, 149 Q 2022-11-14 19:08:21,274:INFO: START 62: Pairwise 62 of , 48 Thr, 62 R, 210 T, 0 F, 148 Q 2022-11-14 19:08:21,300:INFO: START 63: Pairwise 63 of , 48 Thr, 63 R, 210 T, 0 F, 147 Q 2022-11-14 19:08:21,325:INFO: START 64: Pairwise 64 of , 48 Thr, 64 R, 210 T, 0 F, 146 Q 2022-11-14 19:08:21,367:INFO: START 65: Pairwise 65 of , 48 Thr, 65 R, 210 T, 0 F, 145 Q 2022-11-14 19:08:21,391:INFO: START 66: Pairwise 66 of , 48 Thr, 66 R, 210 T, 0 F, 144 Q 2022-11-14 19:08:21,415:INFO: START 67: Pairwise 67 of , 48 Thr, 67 R, 210 T, 0 F, 143 Q 2022-11-14 19:08:21,438:INFO: START 68: Pairwise 68 of , 48 Thr, 68 R, 210 T, 0 F, 142 Q 2022-11-14 19:08:21,462:INFO: START 69: Pairwise 69 of , 48 Thr, 69 R, 210 T, 0 F, 141 Q 2022-11-14 19:08:21,486:INFO: START 70: Pairwise 70 of , 48 Thr, 70 R, 210 T, 0 F, 140 Q 2022-11-14 19:08:21,509:INFO: START 71: Pairwise 71 of , 48 Thr, 71 R, 210 T, 0 F, 139 Q 2022-11-14 19:08:21,533:INFO: START 72: Pairwise 72 of , 48 Thr, 72 R, 210 T, 0 F, 138 Q 2022-11-14 19:08:21,558:INFO: START 73: Pairwise 73 of , 48 Thr, 73 R, 210 T, 0 F, 137 Q 2022-11-14 19:08:21,583:INFO: START 74: Pairwise 74 of , 48 Thr, 74 R, 210 T, 0 F, 136 Q 2022-11-14 19:08:21,607:INFO: START 75: Pairwise 75 of , 48 Thr, 75 R, 210 T, 0 F, 135 Q 2022-11-14 19:08:21,631:INFO: START 76: Pairwise 76 of , 48 Thr, 76 R, 210 T, 0 F, 134 Q 2022-11-14 19:08:21,655:INFO: START 77: Pairwise 77 of , 48 Thr, 77 R, 210 T, 0 F, 133 Q 2022-11-14 19:08:21,679:INFO: START 78: Pairwise 78 of , 48 Thr, 78 R, 210 T, 0 F, 132 Q 2022-11-14 19:08:21,704:INFO: START 79: Pairwise 79 of , 48 Thr, 79 R, 210 T, 0 F, 131 Q 2022-11-14 19:08:21,751:INFO: START 80: Pairwise 80 of , 48 Thr, 80 R, 210 T, 0 F, 130 Q 2022-11-14 19:08:21,775:INFO: START 81: Pairwise 81 of , 48 Thr, 81 R, 210 T, 0 F, 129 Q 2022-11-14 19:08:21,799:INFO: START 82: Pairwise 82 of , 48 Thr, 82 R, 210 T, 0 F, 128 Q 2022-11-14 19:08:21,823:INFO: START 83: Pairwise 83 of , 48 Thr, 83 R, 210 T, 0 F, 127 Q 2022-11-14 19:08:21,848:INFO: START 84: Pairwise 84 of , 48 Thr, 84 R, 210 T, 0 F, 126 Q 2022-11-14 19:08:21,897:INFO: START 85: Pairwise 85 of , 48 Thr, 85 R, 210 T, 0 F, 125 Q 2022-11-14 19:08:21,922:INFO: START 86: Pairwise 86 of , 48 Thr, 86 R, 210 T, 0 F, 124 Q 2022-11-14 19:08:21,959:INFO: START 87: Pairwise 87 of , 48 Thr, 87 R, 210 T, 0 F, 123 Q 2022-11-14 19:08:21,985:INFO: START 88: Pairwise 88 of , 48 Thr, 88 R, 210 T, 0 F, 122 Q 2022-11-14 19:08:22,009:INFO: START 89: Pairwise 89 of , 48 Thr, 89 R, 210 T, 0 F, 121 Q 2022-11-14 19:08:22,051:INFO: START 90: Pairwise 90 of , 48 Thr, 90 R, 210 T, 0 F, 120 Q 2022-11-14 19:08:22,089:INFO: START 91: Pairwise 91 of , 48 Thr, 91 R, 210 T, 0 F, 119 Q 2022-11-14 19:08:22,115:INFO: START 92: Pairwise 92 of , 48 Thr, 92 R, 210 T, 0 F, 118 Q 2022-11-14 19:08:22,139:INFO: START 93: Pairwise 93 of , 48 Thr, 93 R, 210 T, 0 F, 117 Q 2022-11-14 19:08:22,164:INFO: START 94: Pairwise 94 of , 48 Thr, 94 R, 210 T, 0 F, 116 Q 2022-11-14 19:08:22,189:INFO: START 95: Pairwise 95 of , 48 Thr, 95 R, 210 T, 0 F, 115 Q 2022-11-14 19:08:22,214:INFO: START 96: Pairwise 96 of , 48 Thr, 96 R, 210 T, 0 F, 114 Q 2022-11-14 19:08:22,249:INFO: START 97: Pairwise 97 of , 48 Thr, 97 R, 210 T, 0 F, 113 Q 2022-11-14 19:08:22,274:INFO: START 98: Pairwise 98 of , 48 Thr, 98 R, 210 T, 0 F, 112 Q 2022-11-14 19:08:22,324:INFO: START 99: Pairwise 99 of , 48 Thr, 99 R, 210 T, 0 F, 111 Q 2022-11-14 19:08:22,349:INFO: START 100: Pairwise 100 of, 48 Thr, 100 R, 210 T, 0 F, 110 Q 2022-11-14 19:08:22,374:INFO: START 101: Pairwise 101 of, 48 Thr, 101 R, 210 T, 0 F, 109 Q 2022-11-14 19:08:22,399:INFO: START 102: Pairwise 102 of, 48 Thr, 102 R, 210 T, 0 F, 108 Q 2022-11-14 19:08:22,424:INFO: START 103: Pairwise 103 of, 48 Thr, 103 R, 210 T, 0 F, 107 Q 2022-11-14 19:08:22,448:INFO: START 104: Pairwise 104 of, 48 Thr, 104 R, 210 T, 0 F, 106 Q 2022-11-14 19:08:22,473:INFO: START 105: Pairwise 105 of, 48 Thr, 105 R, 210 T, 0 F, 105 Q 2022-11-14 19:08:22,497:INFO: START 106: Pairwise 106 of, 48 Thr, 106 R, 210 T, 0 F, 104 Q 2022-11-14 19:08:22,522:INFO: START 107: Pairwise 107 of, 48 Thr, 107 R, 210 T, 0 F, 103 Q 2022-11-14 19:08:22,546:INFO: START 108: Pairwise 108 of, 48 Thr, 108 R, 210 T, 0 F, 102 Q 2022-11-14 19:08:22,571:INFO: START 109: Pairwise 109 of, 48 Thr, 109 R, 210 T, 0 F, 101 Q 2022-11-14 19:08:22,601:INFO: START 110: Pairwise 110 of, 48 Thr, 110 R, 210 T, 0 F, 100 Q 2022-11-14 19:08:22,626:INFO: START 111: Pairwise 111 of, 48 Thr, 111 R, 210 T, 0 F, 99 Q 2022-11-14 19:08:22,651:INFO: START 112: Pairwise 112 of, 48 Thr, 112 R, 210 T, 0 F, 98 Q 2022-11-14 19:08:22,676:INFO: START 113: Pairwise 113 of, 48 Thr, 113 R, 210 T, 0 F, 97 Q 2022-11-14 19:08:22,701:INFO: START 114: Pairwise 114 of, 48 Thr, 114 R, 210 T, 0 F, 96 Q 2022-11-14 19:08:22,727:INFO: START 115: Pairwise 115 of, 48 Thr, 115 R, 210 T, 0 F, 95 Q 2022-11-14 19:08:22,774:INFO: START 116: Pairwise 116 of, 48 Thr, 116 R, 210 T, 0 F, 94 Q 2022-11-14 19:08:22,798:INFO: START 117: Pairwise 117 of, 48 Thr, 117 R, 210 T, 0 F, 93 Q 2022-11-14 19:08:22,823:INFO: START 118: Pairwise 118 of, 48 Thr, 118 R, 210 T, 0 F, 92 Q 2022-11-14 19:08:22,848:INFO: START 119: Pairwise 119 of, 48 Thr, 119 R, 210 T, 0 F, 91 Q 2022-11-14 19:08:22,871:INFO: START 120: Pairwise 120 of, 48 Thr, 120 R, 210 T, 0 F, 90 Q 2022-11-14 19:08:22,895:INFO: START 121: Pairwise 121 of, 48 Thr, 121 R, 210 T, 0 F, 89 Q 2022-11-14 19:08:22,919:INFO: START 122: Pairwise 122 of, 48 Thr, 122 R, 210 T, 0 F, 88 Q 2022-11-14 19:08:22,945:INFO: START 123: Pairwise 123 of, 48 Thr, 123 R, 210 T, 0 F, 87 Q 2022-11-14 19:08:22,970:INFO: START 124: Pairwise 124 of, 48 Thr, 124 R, 210 T, 0 F, 86 Q 2022-11-14 19:08:23,016:INFO: START 125: Pairwise 125 of, 48 Thr, 125 R, 210 T, 0 F, 85 Q 2022-11-14 19:08:23,040:INFO: START 126: Pairwise 126 of, 48 Thr, 126 R, 210 T, 0 F, 84 Q 2022-11-14 19:08:23,064:INFO: START 127: Pairwise 127 of, 48 Thr, 127 R, 210 T, 0 F, 83 Q 2022-11-14 19:08:23,088:INFO: START 128: Pairwise 128 of, 48 Thr, 128 R, 210 T, 0 F, 82 Q 2022-11-14 19:08:23,113:INFO: START 129: Pairwise 129 of, 48 Thr, 129 R, 210 T, 0 F, 81 Q 2022-11-14 19:08:23,137:INFO: START 130: Pairwise 130 of, 48 Thr, 130 R, 210 T, 0 F, 80 Q 2022-11-14 19:08:23,162:INFO: START 131: Pairwise 131 of, 48 Thr, 131 R, 210 T, 0 F, 79 Q 2022-11-14 19:08:23,186:INFO: START 132: Pairwise 132 of, 48 Thr, 132 R, 210 T, 0 F, 78 Q 2022-11-14 19:08:23,211:INFO: START 133: Pairwise 133 of, 48 Thr, 133 R, 210 T, 0 F, 77 Q 2022-11-14 19:08:23,236:INFO: START 134: Pairwise 134 of, 48 Thr, 134 R, 210 T, 0 F, 76 Q 2022-11-14 19:08:23,261:INFO: START 135: Pairwise 135 of, 48 Thr, 135 R, 210 T, 0 F, 75 Q 2022-11-14 19:08:23,286:INFO: START 136: Pairwise 136 of, 48 Thr, 136 R, 210 T, 0 F, 74 Q 2022-11-14 19:08:23,310:INFO: START 137: Pairwise 137 of, 48 Thr, 137 R, 210 T, 0 F, 73 Q 2022-11-14 19:08:23,335:INFO: START 138: Pairwise 138 of, 48 Thr, 138 R, 210 T, 0 F, 72 Q 2022-11-14 19:08:23,361:INFO: START 139: Pairwise 139 of, 48 Thr, 139 R, 210 T, 0 F, 71 Q 2022-11-14 19:08:23,386:INFO: START 140: Pairwise 140 of, 48 Thr, 140 R, 210 T, 0 F, 70 Q 2022-11-14 19:08:23,410:INFO: START 141: Pairwise 141 of, 48 Thr, 141 R, 210 T, 0 F, 69 Q 2022-11-14 19:08:23,435:INFO: START 142: Pairwise 142 of, 48 Thr, 142 R, 210 T, 0 F, 68 Q 2022-11-14 19:08:23,459:INFO: START 143: Pairwise 143 of, 48 Thr, 143 R, 210 T, 0 F, 67 Q 2022-11-14 19:08:23,484:INFO: START 144: Pairwise 144 of, 48 Thr, 144 R, 210 T, 0 F, 66 Q 2022-11-14 19:08:23,509:INFO: START 145: Pairwise 145 of, 48 Thr, 145 R, 210 T, 0 F, 65 Q 2022-11-14 19:08:23,533:INFO: START 146: Pairwise 146 of, 48 Thr, 146 R, 210 T, 0 F, 64 Q 2022-11-14 19:08:23,557:INFO: START 147: Pairwise 147 of, 48 Thr, 147 R, 210 T, 0 F, 63 Q 2022-11-14 19:08:23,581:INFO: START 148: Pairwise 148 of, 48 Thr, 148 R, 210 T, 0 F, 62 Q 2022-11-14 19:08:23,613:INFO: START 149: Pairwise 149 of, 48 Thr, 149 R, 210 T, 0 F, 61 Q 2022-11-14 19:08:23,671:INFO: START 150: Pairwise 150 of, 48 Thr, 150 R, 210 T, 0 F, 60 Q 2022-11-14 19:08:23,704:INFO: START 151: Pairwise 151 of, 48 Thr, 151 R, 210 T, 0 F, 59 Q 2022-11-14 19:08:23,729:INFO: START 152: Pairwise 152 of, 48 Thr, 152 R, 210 T, 0 F, 58 Q 2022-11-14 19:08:23,753:INFO: START 153: Pairwise 153 of, 48 Thr, 153 R, 210 T, 0 F, 57 Q 2022-11-14 19:08:23,778:INFO: START 154: Pairwise 154 of, 48 Thr, 154 R, 210 T, 0 F, 56 Q 2022-11-14 19:08:23,803:INFO: START 155: Pairwise 155 of, 48 Thr, 155 R, 210 T, 0 F, 55 Q 2022-11-14 19:08:23,828:INFO: START 156: Pairwise 156 of, 48 Thr, 156 R, 210 T, 0 F, 54 Q 2022-11-14 19:08:23,853:INFO: START 157: Pairwise 157 of, 48 Thr, 157 R, 210 T, 0 F, 53 Q 2022-11-14 19:08:23,877:INFO: START 158: Pairwise 158 of, 48 Thr, 158 R, 210 T, 0 F, 52 Q 2022-11-14 19:08:23,901:INFO: START 159: Pairwise 159 of, 48 Thr, 159 R, 210 T, 0 F, 51 Q 2022-11-14 19:08:23,926:INFO: START 160: Pairwise 160 of, 48 Thr, 160 R, 210 T, 0 F, 50 Q 2022-11-14 19:08:23,979:INFO: START 161: Pairwise 161 of, 48 Thr, 161 R, 210 T, 0 F, 49 Q 2022-11-14 19:08:24,003:INFO: START 162: Pairwise 162 of, 48 Thr, 162 R, 210 T, 0 F, 48 Q 2022-11-14 19:08:24,028:INFO: START 163: Pairwise 163 of, 48 Thr, 163 R, 210 T, 0 F, 47 Q 2022-11-14 19:08:24,053:INFO: START 164: Pairwise 164 of, 48 Thr, 164 R, 210 T, 0 F, 46 Q 2022-11-14 19:08:24,077:INFO: START 165: Pairwise 165 of, 48 Thr, 165 R, 210 T, 0 F, 45 Q 2022-11-14 19:08:24,102:INFO: START 166: Pairwise 166 of, 48 Thr, 166 R, 210 T, 0 F, 44 Q 2022-11-14 19:08:24,127:INFO: START 167: Pairwise 167 of, 48 Thr, 167 R, 210 T, 0 F, 43 Q 2022-11-14 19:08:24,152:INFO: START 168: Pairwise 168 of, 48 Thr, 168 R, 210 T, 0 F, 42 Q 2022-11-14 19:08:24,177:INFO: START 169: Pairwise 169 of, 48 Thr, 169 R, 210 T, 0 F, 41 Q 2022-11-14 19:08:24,202:INFO: START 170: Pairwise 170 of, 48 Thr, 170 R, 210 T, 0 F, 40 Q 2022-11-14 19:08:24,226:INFO: START 171: Pairwise 171 of, 48 Thr, 171 R, 210 T, 0 F, 39 Q 2022-11-14 19:08:24,250:INFO: START 172: Pairwise 172 of, 48 Thr, 172 R, 210 T, 0 F, 38 Q 2022-11-14 19:08:24,275:INFO: START 173: Pairwise 173 of, 48 Thr, 173 R, 210 T, 0 F, 37 Q 2022-11-14 19:08:24,299:INFO: START 174: Pairwise 174 of, 48 Thr, 174 R, 210 T, 0 F, 36 Q 2022-11-14 19:08:24,401:INFO: START 175: Pairwise 175 of, 48 Thr, 175 R, 210 T, 0 F, 35 Q 2022-11-14 19:08:24,425:INFO: START 176: Pairwise 176 of, 48 Thr, 176 R, 210 T, 0 F, 34 Q 2022-11-14 19:08:24,449:INFO: START 177: Pairwise 177 of, 48 Thr, 177 R, 210 T, 0 F, 33 Q 2022-11-14 19:08:24,473:INFO: START 178: Pairwise 178 of, 48 Thr, 178 R, 210 T, 0 F, 32 Q 2022-11-14 19:08:24,498:INFO: START 179: Pairwise 179 of, 48 Thr, 179 R, 210 T, 0 F, 31 Q 2022-11-14 19:08:24,522:INFO: START 180: Pairwise 180 of, 48 Thr, 180 R, 210 T, 0 F, 30 Q 2022-11-14 19:08:24,546:INFO: START 181: Pairwise 181 of, 48 Thr, 181 R, 210 T, 0 F, 29 Q 2022-11-14 19:08:24,571:INFO: START 182: Pairwise 182 of, 48 Thr, 182 R, 210 T, 0 F, 28 Q 2022-11-14 19:08:24,596:INFO: START 183: Pairwise 183 of, 48 Thr, 183 R, 210 T, 0 F, 27 Q 2022-11-14 19:08:24,620:INFO: START 184: Pairwise 184 of, 48 Thr, 184 R, 210 T, 0 F, 26 Q 2022-11-14 19:08:24,645:INFO: START 185: Pairwise 185 of, 48 Thr, 185 R, 210 T, 0 F, 25 Q 2022-11-14 19:08:24,669:INFO: START 186: Pairwise 186 of, 48 Thr, 186 R, 210 T, 0 F, 24 Q 2022-11-14 19:08:24,694:INFO: START 187: Pairwise 187 of, 48 Thr, 187 R, 210 T, 0 F, 23 Q 2022-11-14 19:08:24,719:INFO: START 188: Pairwise 188 of, 48 Thr, 188 R, 210 T, 0 F, 22 Q 2022-11-14 19:08:24,743:INFO: START 189: Pairwise 189 of, 48 Thr, 189 R, 210 T, 0 F, 21 Q 2022-11-14 19:08:24,767:INFO: START 190: Pairwise 190 of, 48 Thr, 190 R, 210 T, 0 F, 20 Q 2022-11-14 19:08:24,791:INFO: START 191: Pairwise 191 of, 48 Thr, 191 R, 210 T, 0 F, 19 Q 2022-11-14 19:08:24,815:INFO: START 192: Pairwise 192 of, 48 Thr, 192 R, 210 T, 0 F, 18 Q 2022-11-14 19:08:24,840:INFO: START 193: Pairwise 193 of, 48 Thr, 193 R, 210 T, 0 F, 17 Q 2022-11-14 19:08:24,864:INFO: START 194: Pairwise 194 of, 48 Thr, 194 R, 210 T, 0 F, 16 Q 2022-11-14 19:08:24,901:INFO: START 195: Pairwise 195 of, 48 Thr, 195 R, 210 T, 0 F, 15 Q 2022-11-14 19:08:24,925:INFO: START 196: Pairwise 196 of, 48 Thr, 196 R, 210 T, 0 F, 14 Q 2022-11-14 19:08:24,949:INFO: START 197: Pairwise 197 of, 48 Thr, 197 R, 210 T, 0 F, 13 Q 2022-11-14 19:08:24,977:INFO: START 198: Pairwise 198 of, 48 Thr, 198 R, 210 T, 0 F, 12 Q 2022-11-14 19:08:25,001:INFO: START 199: Pairwise 199 of, 48 Thr, 199 R, 210 T, 0 F, 11 Q 2022-11-14 19:08:25,026:INFO: START 200: Pairwise 200 of, 48 Thr, 200 R, 210 T, 0 F, 10 Q 2022-11-14 19:08:25,050:INFO: START 201: Pairwise 201 of, 48 Thr, 201 R, 210 T, 0 F, 9 Q 2022-11-14 19:08:25,075:INFO: START 202: Pairwise 202 of, 48 Thr, 202 R, 210 T, 0 F, 8 Q 2022-11-14 19:08:25,099:INFO: START 203: Pairwise 203 of, 48 Thr, 203 R, 210 T, 0 F, 7 Q 2022-11-14 19:08:25,127:INFO: START 204: Pairwise 204 of, 48 Thr, 204 R, 210 T, 0 F, 6 Q 2022-11-14 19:08:25,160:INFO: START 205: Pairwise 205 of, 48 Thr, 205 R, 210 T, 0 F, 5 Q 2022-11-14 19:08:25,184:INFO: START 206: Pairwise 206 of, 48 Thr, 206 R, 210 T, 0 F, 4 Q 2022-11-14 19:08:25,208:INFO: START 207: Pairwise 207 of, 48 Thr, 207 R, 210 T, 0 F, 3 Q 2022-11-14 19:08:25,232:INFO: START 208: Pairwise 208 of, 48 Thr, 208 R, 210 T, 0 F, 2 Q 2022-11-14 19:08:25,257:INFO: START 209: Pairwise 209 of, 48 Thr, 209 R, 210 T, 0 F, 1 Q 2022-11-14 19:08:25,281:INFO: START 210: Pairwise 210 of, 48 Thr, 210 R, 210 T, 0 F, 0 Q 2022-11-14 19:09:35,969:INFO: STOP 21: Pairwise 21 of , 48 Thr, 209 R, 210 T, 1 F, 0 Q TotalTime= 0h 1.26m RunTime= 0h 1.22m CPUload=2027% bionano1a 2022-11-14 19:09:47,206:INFO: STOP 1: Pairwise 1 of 2, 48 Thr, 208 R, 210 T, 2 F, 0 Q TotalTime= 0h 1.46m RunTime= 0h 1.29m CPUload=2158% saphyr1b 2022-11-14 19:10:01,458:INFO: STOP 23: Pairwise 23 of , 48 Thr, 207 R, 210 T, 3 F, 0 Q TotalTime= 0h 1.69m RunTime= 0h 1.61m CPUload=2084% saphyr1a 2022-11-14 19:10:03,757:INFO: STOP 19: Pairwise 19 of , 48 Thr, 206 R, 210 T, 4 F, 0 Q TotalTime= 0h 1.73m RunTime= 0h 1.63m CPUload=1989% bionano1a 2022-11-14 19:10:13,005:INFO: STOP 22: Pairwise 22 of , 48 Thr, 205 R, 210 T, 5 F, 0 Q TotalTime= 0h 1.88m RunTime= 0h 1.83m CPUload=1863% bionano2a 2022-11-14 19:10:15,255:INFO: STOP 24: Pairwise 24 of , 48 Thr, 204 R, 210 T, 6 F, 0 Q TotalTime= 0h 1.92m RunTime= 0h 1.86m CPUload=1842% saphyr1a 2022-11-14 19:10:17,497:INFO: STOP 20: Pairwise 20 of , 48 Thr, 203 R, 210 T, 7 F, 0 Q TotalTime= 0h 1.96m RunTime= 0h 1.87m CPUload=1733% bionano2a 2022-11-14 19:10:29,750:INFO: STOP 6: Pairwise 6 of 2, 48 Thr, 202 R, 210 T, 8 F, 0 Q TotalTime= 0h 2.17m RunTime= 0h 2.09m CPUload=1852% bionano2d 2022-11-14 19:10:31,914:INFO: STOP 10: Pairwise 10 of , 48 Thr, 201 R, 210 T, 9 F, 0 Q TotalTime= 0h 2.20m RunTime= 0h 2.17m CPUload=1762% bionano2d 2022-11-14 19:10:34,028:INFO: STOP 18: Pairwise 18 of , 48 Thr, 200 R, 210 T, 10 F, 0 Q TotalTime= 0h 2.23m RunTime= 0h 2.14m CPUload=1761% bionano1b 2022-11-14 19:10:34,106:INFO: STOP 9: Pairwise 9 of 2, 48 Thr, 199 R, 210 T, 11 F, 0 Q TotalTime= 0h 2.24m RunTime= 0h 2.18m CPUload=1738% bionano1b 2022-11-14 19:10:40,556:INFO: STOP 14: Pairwise 14 of , 48 Thr, 198 R, 210 T, 12 F, 0 Q TotalTime= 0h 2.34m RunTime= 0h 2.24m CPUload=1655% saphyr1d 2022-11-14 19:10:44,906:INFO: STOP 7: Pairwise 7 of 2, 48 Thr, 197 R, 210 T, 13 F, 0 Q TotalTime= 0h 2.42m RunTime= 0h 2.26m CPUload=1647% bionano1d 2022-11-14 19:10:44,918:INFO: STOP 4: Pairwise 4 of 2, 48 Thr, 196 R, 210 T, 14 F, 0 Q TotalTime= 0h 2.42m RunTime= 0h 2.29m CPUload=1643% saphyr1c 2022-11-14 19:10:46,956:INFO: STOP 16: Pairwise 16 of , 48 Thr, 195 R, 210 T, 15 F, 0 Q TotalTime= 0h 2.45m RunTime= 0h 2.11m CPUload=1778% bionano1d 2022-11-14 19:10:46,957:INFO: STOP 15: Pairwise 15 of , 48 Thr, 194 R, 210 T, 16 F, 0 Q TotalTime= 0h 2.45m RunTime= 0h 2.15m CPUload=1780% saphyr1b 2022-11-14 19:10:46,969:INFO: STOP 12: Pairwise 12 of , 48 Thr, 193 R, 210 T, 17 F, 0 Q TotalTime= 0h 2.45m RunTime= 0h 2.38m CPUload=1603% saphyr1c 2022-11-14 19:10:47,013:INFO: STOP 2: Pairwise 2 of 2, 48 Thr, 192 R, 210 T, 18 F, 0 Q TotalTime= 0h 2.46m RunTime= 0h 2.37m CPUload=1600% saphyr1d 2022-11-14 19:10:52,258:INFO: STOP 13: Pairwise 13 of , 48 Thr, 191 R, 210 T, 19 F, 0 Q TotalTime= 0h 2.54m RunTime= 0h 2.33m CPUload=1637% bionano1c 2022-11-14 19:10:52,291:INFO: STOP 3: Pairwise 3 of 2, 48 Thr, 190 R, 210 T, 20 F, 0 Q TotalTime= 0h 2.54m RunTime= 0h 2.33m CPUload=1666% bionano1c 2022-11-14 19:10:56,315:INFO: STOP 25: Pairwise 25 of , 48 Thr, 189 R, 210 T, 21 F, 0 Q TotalTime= 0h 2.60m RunTime= 0h 1.28m CPUload=2586% bionano1a 2022-11-14 19:10:56,338:INFO: STOP 8: Pairwise 8 of 2, 48 Thr, 188 R, 210 T, 22 F, 0 Q TotalTime= 0h 2.61m RunTime= 0h 2.49m CPUload=1829% bionano2b 2022-11-14 19:11:00,358:INFO: STOP 17: Pairwise 17 of , 48 Thr, 187 R, 210 T, 23 F, 0 Q TotalTime= 0h 2.67m RunTime= 0h 2.34m CPUload=1984% bionano2b 2022-11-14 19:11:00,359:INFO: STOP 11: Pairwise 11 of , 48 Thr, 186 R, 210 T, 24 F, 0 Q TotalTime= 0h 2.67m RunTime= 0h 2.50m CPUload=1725% bionano2c 2022-11-14 19:11:00,360:INFO: STOP 5: Pairwise 5 of 2, 48 Thr, 185 R, 210 T, 25 F, 0 Q TotalTime= 0h 2.68m RunTime= 0h 2.50m CPUload=1745% bionano2c 2022-11-14 19:11:20,516:INFO: STOP 27: Pairwise 27 of , 48 Thr, 184 R, 210 T, 26 F, 0 Q TotalTime= 0h 3.00m RunTime= 0h 1.29m CPUload=2576% saphyr1a 2022-11-14 19:11:37,569:INFO: STOP 28: Pairwise 28 of , 48 Thr, 183 R, 210 T, 27 F, 0 Q TotalTime= 0h 3.29m RunTime= 0h 1.45m CPUload=2301% bionano1a 2022-11-14 19:11:51,401:INFO: STOP 29: Pairwise 29 of , 48 Thr, 182 R, 210 T, 28 F, 0 Q TotalTime= 0h 3.52m RunTime= 0h 1.59m CPUload=2117% bionano2a 2022-11-14 19:11:57,390:INFO: STOP 31: Pairwise 31 of , 48 Thr, 181 R, 210 T, 29 F, 0 Q TotalTime= 0h 3.62m RunTime= 0h 1.64m CPUload=2043% bionano2a 2022-11-14 19:11:57,404:INFO: STOP 26: Pairwise 26 of , 48 Thr, 180 R, 210 T, 30 F, 0 Q TotalTime= 0h 3.62m RunTime= 0h 2.02m CPUload=1830% saphyr1b 2022-11-14 19:12:05,325:INFO: STOP 30: Pairwise 30 of , 48 Thr, 179 R, 210 T, 31 F, 0 Q TotalTime= 0h 3.75m RunTime= 0h 1.81m CPUload=1889% saphyr1a 2022-11-14 19:12:25,863:INFO: STOP 46: Pairwise 46 of , 48 Thr, 178 R, 210 T, 32 F, 0 Q TotalTime= 0h 4.08m RunTime= 0h 1.39m CPUload=2278% bionano1a 2022-11-14 19:12:43,357:INFO: STOP 50: Pairwise 50 of , 48 Thr, 177 R, 210 T, 33 F, 0 Q TotalTime= 0h 4.37m RunTime= 0h 1.32m CPUload=2377% saphyr1a 2022-11-14 19:12:51,199:INFO: STOP 39: Pairwise 39 of , 48 Thr, 176 R, 210 T, 34 F, 0 Q TotalTime= 0h 4.51m RunTime= 0h 1.86m CPUload=2017% saphyr1b 2022-11-14 19:12:52,201:INFO: STOP 38: Pairwise 38 of , 48 Thr, 175 R, 210 T, 35 F, 0 Q TotalTime= 0h 4.53m RunTime= 0h 1.99m CPUload=1931% saphyr1c 2022-11-14 19:12:52,257:INFO: STOP 32: Pairwise 32 of , 48 Thr, 174 R, 210 T, 36 F, 0 Q TotalTime= 0h 4.53m RunTime= 0h 2.23m CPUload=1930% bionano2d 2022-11-14 19:12:54,145:INFO: STOP 33: Pairwise 33 of , 48 Thr, 173 R, 210 T, 37 F, 0 Q TotalTime= 0h 4.56m RunTime= 0h 2.30m CPUload=1869% bionano2d 2022-11-14 19:13:01,530:INFO: STOP 51: Pairwise 51 of , 48 Thr, 172 R, 210 T, 38 F, 0 Q TotalTime= 0h 4.68m RunTime= 0h 1.32m CPUload=2337% bionano1a 2022-11-14 19:13:03,524:INFO: STOP 35: Pairwise 35 of , 48 Thr, 171 R, 210 T, 39 F, 0 Q TotalTime= 0h 4.72m RunTime= 0h 2.42m CPUload=1599% bionano1b 2022-11-14 19:13:03,526:INFO: STOP 34: Pairwise 34 of , 48 Thr, 170 R, 210 T, 40 F, 0 Q TotalTime= 0h 4.72m RunTime= 0h 2.42m CPUload=1627% bionano1b 2022-11-14 19:13:06,609:INFO: STOP 41: Pairwise 41 of , 48 Thr, 169 R, 210 T, 41 F, 0 Q TotalTime= 0h 4.76m RunTime= 0h 2.24m CPUload=1681% saphyr1d 2022-11-14 19:13:06,610:INFO: STOP 40: Pairwise 40 of , 48 Thr, 168 R, 210 T, 42 F, 0 Q TotalTime= 0h 4.76m RunTime= 0h 2.11m CPUload=1325% bionano1d 2022-11-14 19:13:06,612:INFO: STOP 37: Pairwise 37 of , 48 Thr, 167 R, 210 T, 43 F, 0 Q TotalTime= 0h 4.77m RunTime= 0h 2.30m CPUload=1707% bionano1d 2022-11-14 19:13:06,613:INFO: STOP 36: Pairwise 36 of , 48 Thr, 166 R, 210 T, 44 F, 0 Q TotalTime= 0h 4.77m RunTime= 0h 2.24m CPUload=1734% saphyr1d 2022-11-14 19:13:08,432:INFO: STOP 42: Pairwise 42 of , 48 Thr, 165 R, 210 T, 45 F, 0 Q TotalTime= 0h 4.79m RunTime= 0h 2.23m CPUload=1721% saphyr1c 2022-11-14 19:13:13,699:INFO: STOP 52: Pairwise 52 of , 48 Thr, 164 R, 210 T, 46 F, 0 Q TotalTime= 0h 4.88m RunTime= 0h 1.28m CPUload=2556% bionano2a 2022-11-14 19:13:19,065:INFO: STOP 43: Pairwise 43 of , 48 Thr, 163 R, 210 T, 47 F, 0 Q TotalTime= 0h 4.97m RunTime= 0h 2.36m CPUload=1642% bionano1c 2022-11-14 19:13:20,817:INFO: STOP 44: Pairwise 44 of , 48 Thr, 162 R, 210 T, 48 F, 0 Q TotalTime= 0h 5.00m RunTime= 0h 2.38m CPUload=1602% bionano1c 2022-11-14 19:13:28,755:INFO: STOP 49: Pairwise 49 of , 48 Thr, 161 R, 210 T, 49 F, 0 Q TotalTime= 0h 5.13m RunTime= 0h 2.40m CPUload=1703% bionano2c 2022-11-14 19:13:30,471:INFO: STOP 48: Pairwise 48 of , 48 Thr, 160 R, 210 T, 50 F, 0 Q TotalTime= 0h 5.16m RunTime= 0h 2.44m CPUload=1733% bionano2c 2022-11-14 19:13:37,470:INFO: STOP 45: Pairwise 45 of , 48 Thr, 159 R, 210 T, 51 F, 0 Q TotalTime= 0h 5.28m RunTime= 0h 2.57m CPUload=1934% bionano2b 2022-11-14 19:13:39,699:INFO: STOP 55: Pairwise 55 of , 48 Thr, 158 R, 210 T, 52 F, 0 Q TotalTime= 0h 5.31m RunTime= 0h 1.49m CPUload=2114% saphyr1a 2022-11-14 19:13:39,702:INFO: STOP 54: Pairwise 54 of , 48 Thr, 157 R, 210 T, 53 F, 0 Q TotalTime= 0h 5.31m RunTime= 0h 1.57m CPUload=2063% bionano2a 2022-11-14 19:13:44,887:INFO: STOP 47: Pairwise 47 of , 48 Thr, 156 R, 210 T, 54 F, 0 Q TotalTime= 0h 5.40m RunTime= 0h 2.67m CPUload=1907% bionano2b 2022-11-14 19:14:13,708:INFO: STOP 57: Pairwise 57 of , 48 Thr, 155 R, 210 T, 55 F, 0 Q TotalTime= 0h 5.88m RunTime= 0h 1.49m CPUload=2161% saphyr1a 2022-11-14 19:14:13,710:INFO: STOP 56: Pairwise 56 of , 48 Thr, 154 R, 210 T, 56 F, 0 Q TotalTime= 0h 5.88m RunTime= 0h 1.25m CPUload=2481% bionano1a 2022-11-14 19:14:39,953:INFO: STOP 53: Pairwise 53 of , 48 Thr, 153 R, 210 T, 57 F, 0 Q TotalTime= 0h 6.32m RunTime= 0h 2.13m CPUload=1756% saphyr1b 2022-11-14 19:14:43,152:INFO: STOP 69: Pairwise 69 of , 48 Thr, 152 R, 210 T, 58 F, 0 Q TotalTime= 0h 6.36m RunTime= 0h 1.41m CPUload=2318% bionano2a 2022-11-14 19:14:46,580:INFO: STOP 58: Pairwise 58 of , 48 Thr, 151 R, 210 T, 59 F, 0 Q TotalTime= 0h 6.42m RunTime= 0h 1.69m CPUload=1557% saphyr1b 2022-11-14 19:14:48,207:INFO: STOP 59: Pairwise 59 of , 48 Thr, 150 R, 210 T, 60 F, 0 Q TotalTime= 0h 6.45m RunTime= 0h 1.70m CPUload=2139% saphyr1c 2022-11-14 19:14:52,901:INFO: STOP 75: Pairwise 75 of , 48 Thr, 149 R, 210 T, 61 F, 0 Q TotalTime= 0h 6.52m RunTime= 0h 1.16m CPUload=2144% bionano2a 2022-11-14 19:15:01,015:INFO: STOP 66: Pairwise 66 of , 48 Thr, 148 R, 210 T, 62 F, 0 Q TotalTime= 0h 6.66m RunTime= 0h 1.87m CPUload=2010% bionano1d 2022-11-14 19:15:07,438:INFO: STOP 60: Pairwise 60 of , 48 Thr, 147 R, 210 T, 63 F, 0 Q TotalTime= 0h 6.77m RunTime= 0h 2.19m CPUload=1893% bionano2d 2022-11-14 19:15:14,701:INFO: STOP 76: Pairwise 76 of , 48 Thr, 146 R, 210 T, 64 F, 0 Q TotalTime= 0h 6.88m RunTime= 0h 1.53m CPUload=2241% saphyr1a 2022-11-14 19:15:14,780:INFO: STOP 65: Pairwise 65 of , 48 Thr, 145 R, 210 T, 65 F, 0 Q TotalTime= 0h 6.89m RunTime= 0h 2.12m CPUload=1743% bionano1b 2022-11-14 19:15:16,401:INFO: STOP 61: Pairwise 61 of , 48 Thr, 144 R, 210 T, 66 F, 0 Q TotalTime= 0h 6.92m RunTime= 0h 2.21m CPUload=1887% bionano2d 2022-11-14 19:15:22,672:INFO: STOP 63: Pairwise 63 of , 48 Thr, 143 R, 210 T, 67 F, 0 Q TotalTime= 0h 7.02m RunTime= 0h 2.20m CPUload=1699% bionano1b 2022-11-14 19:15:33,509:INFO: STOP 68: Pairwise 68 of , 48 Thr, 142 R, 210 T, 68 F, 0 Q TotalTime= 0h 7.20m RunTime= 0h 2.25m CPUload=1599% saphyr1c 2022-11-14 19:15:33,511:INFO: STOP 67: Pairwise 67 of , 48 Thr, 141 R, 210 T, 69 F, 0 Q TotalTime= 0h 7.20m RunTime= 0h 2.21m CPUload=1674% bionano1d 2022-11-14 19:15:38,235:INFO: STOP 64: Pairwise 64 of , 48 Thr, 140 R, 210 T, 70 F, 0 Q TotalTime= 0h 7.28m RunTime= 0h 2.42m CPUload=1594% saphyr1d 2022-11-14 19:15:38,237:INFO: STOP 62: Pairwise 62 of , 48 Thr, 139 R, 210 T, 71 F, 0 Q TotalTime= 0h 7.28m RunTime= 0h 2.42m CPUload=1586% saphyr1d 2022-11-14 19:15:48,715:INFO: STOP 71: Pairwise 71 of , 48 Thr, 138 R, 210 T, 72 F, 0 Q TotalTime= 0h 7.45m RunTime= 0h 2.42m CPUload=1543% bionano1c 2022-11-14 19:15:48,716:INFO: STOP 70: Pairwise 70 of , 48 Thr, 137 R, 210 T, 73 F, 0 Q TotalTime= 0h 7.45m RunTime= 0h 2.45m CPUload=1526% bionano1c 2022-11-14 19:16:02,069:INFO: STOP 79: Pairwise 79 of , 48 Thr, 136 R, 210 T, 74 F, 0 Q TotalTime= 0h 7.67m RunTime= 0h 1.76m CPUload=1946% saphyr1a 2022-11-14 19:16:19,878:INFO: STOP 81: Pairwise 81 of , 48 Thr, 135 R, 210 T, 75 F, 0 Q TotalTime= 0h 7.97m RunTime= 0h 1.54m CPUload=2463% bionano2a 2022-11-14 19:16:22,971:INFO: STOP 72: Pairwise 72 of , 48 Thr, 134 R, 210 T, 76 F, 0 Q TotalTime= 0h 8.02m RunTime= 0h 2.74m CPUload=1800% bionano2c 2022-11-14 19:16:29,740:INFO: STOP 73: Pairwise 73 of , 48 Thr, 133 R, 210 T, 77 F, 0 Q TotalTime= 0h 8.14m RunTime= 0h 2.89m CPUload=1781% bionano2c 2022-11-14 19:16:31,113:INFO: STOP 83: Pairwise 83 of , 48 Thr, 132 R, 210 T, 78 F, 0 Q TotalTime= 0h 8.15m RunTime= 0h 1.62m CPUload=2463% saphyr1c 2022-11-14 19:16:47,171:INFO: STOP 84: Pairwise 84 of , 48 Thr, 131 R, 210 T, 79 F, 0 Q TotalTime= 0h 8.42m RunTime= 0h 1.84m CPUload=2046% bionano2a 2022-11-14 19:16:47,206:INFO: STOP 77: Pairwise 77 of , 48 Thr, 130 R, 210 T, 80 F, 0 Q TotalTime= 0h 8.43m RunTime= 0h 2.81m CPUload=1916% bionano2b 2022-11-14 19:16:47,208:INFO: STOP 74: Pairwise 74 of , 48 Thr, 129 R, 210 T, 81 F, 0 Q TotalTime= 0h 8.43m RunTime= 0h 3.02m CPUload=1629% bionano2b 2022-11-14 19:16:52,794:INFO: STOP 87: Pairwise 87 of , 48 Thr, 128 R, 210 T, 82 F, 0 Q TotalTime= 0h 8.51m RunTime= 0h 1.63m CPUload=2095% saphyr1a 2022-11-14 19:17:16,435:INFO: STOP 88: Pairwise 88 of , 48 Thr, 127 R, 210 T, 83 F, 0 Q TotalTime= 0h 8.91m RunTime= 0h 1.94m CPUload=1953% bionano1b 2022-11-14 19:17:18,152:INFO: STOP 91: Pairwise 91 of , 48 Thr, 126 R, 210 T, 84 F, 0 Q TotalTime= 0h 8.93m RunTime= 0h 1.31m CPUload=2148% saphyr1c 2022-11-14 19:17:18,186:INFO: STOP 85: Pairwise 85 of , 48 Thr, 125 R, 210 T, 85 F, 0 Q TotalTime= 0h 8.94m RunTime= 0h 1.98m CPUload=1940% bionano1d 2022-11-14 19:17:18,187:INFO: STOP 82: Pairwise 82 of , 48 Thr, 124 R, 210 T, 86 F, 0 Q TotalTime= 0h 8.94m RunTime= 0h 2.35m CPUload=1692% saphyr1b 2022-11-14 19:17:22,300:INFO: STOP 80: Pairwise 80 of , 48 Thr, 123 R, 210 T, 87 F, 0 Q TotalTime= 0h 9.01m RunTime= 0h 2.53m CPUload=1549% saphyr1b 2022-11-14 19:17:28,876:INFO: STOP 90: Pairwise 90 of , 48 Thr, 122 R, 210 T, 88 F, 0 Q TotalTime= 0h 9.11m RunTime= 0h 2.03m CPUload=1840% bionano1b 2022-11-14 19:17:40,829:INFO: STOP 89: Pairwise 89 of , 48 Thr, 121 R, 210 T, 89 F, 0 Q TotalTime= 0h 9.31m RunTime= 0h 2.33m CPUload=1690% bionano2d 2022-11-14 19:17:40,831:INFO: STOP 86: Pairwise 86 of , 48 Thr, 120 R, 210 T, 90 F, 0 Q TotalTime= 0h 9.32m RunTime= 0h 2.33m CPUload=1721% bionano2d 2022-11-14 19:17:43,403:INFO: STOP 97: Pairwise 97 of , 48 Thr, 119 R, 210 T, 91 F, 0 Q TotalTime= 0h 9.35m RunTime= 0h 1.64m CPUload=2102% saphyr1a 2022-11-14 19:17:57,726:INFO: STOP 92: Pairwise 92 of , 48 Thr, 118 R, 210 T, 92 F, 0 Q TotalTime= 0h 9.59m RunTime= 0h 2.09m CPUload=1822% bionano1d 2022-11-14 19:18:01,552:INFO: STOP 98: Pairwise 98 of , 48 Thr, 117 R, 210 T, 93 F, 0 Q TotalTime= 0h 9.65m RunTime= 0h 1.58m CPUload=2375% bionano2a 2022-11-14 19:18:06,603:INFO: STOP 93: Pairwise 93 of , 48 Thr, 116 R, 210 T, 94 F, 0 Q TotalTime= 0h 9.74m RunTime= 0h 2.25m CPUload=1840% saphyr1d 2022-11-14 19:18:29,066:INFO: STOP 94: Pairwise 94 of , 48 Thr, 115 R, 210 T, 95 F, 0 Q TotalTime= 0h 10.12m RunTime= 0h 2.37m CPUload=1878% saphyr1d 2022-11-14 19:18:31,498:INFO: STOP 105: Pairwise 105 of, 48 Thr, 114 R, 210 T, 96 F, 0 Q TotalTime= 0h 10.15m RunTime= 0h 1.60m CPUload=2106% saphyr1a 2022-11-14 19:18:36,481:INFO: STOP 106: Pairwise 106 of, 48 Thr, 113 R, 210 T, 97 F, 0 Q TotalTime= 0h 10.23m RunTime= 0h 1.24m CPUload=2208% bionano1b 2022-11-14 19:18:36,505:INFO: STOP 102: Pairwise 102 of, 48 Thr, 112 R, 210 T, 98 F, 0 Q TotalTime= 0h 10.24m RunTime= 0h 1.74m CPUload=2117% bionano2a 2022-11-14 19:18:41,435:INFO: STOP 95: Pairwise 95 of , 48 Thr, 111 R, 210 T, 99 F, 0 Q TotalTime= 0h 10.32m RunTime= 0h 2.66m CPUload=1486% bionano1c 2022-11-14 19:18:42,633:INFO: STOP 96: Pairwise 96 of , 48 Thr, 110 R, 210 T, 100 F, 0 Q TotalTime= 0h 10.34m RunTime= 0h 2.51m CPUload=1568% bionano1c 2022-11-14 19:19:07,360:INFO: STOP 100: Pairwise 100 of, 48 Thr, 109 R, 210 T, 101 F, 0 Q TotalTime= 0h 10.75m RunTime= 0h 2.20m CPUload=1762% saphyr1c 2022-11-14 19:19:17,941:INFO: STOP 107: Pairwise 107 of, 48 Thr, 108 R, 210 T, 102 F, 0 Q TotalTime= 0h 10.92m RunTime= 0h 1.88m CPUload=1994% bionano1d 2022-11-14 19:19:21,460:INFO: STOP 111: Pairwise 111 of, 48 Thr, 107 R, 210 T, 103 F, 0 Q TotalTime= 0h 10.98m RunTime= 0h 1.80m CPUload=2055% bionano1b 2022-11-14 19:19:22,583:INFO: STOP 116: Pairwise 116 of, 48 Thr, 106 R, 210 T, 104 F, 0 Q TotalTime= 0h 11.00m RunTime= 0h 1.25m CPUload=2678% bionano2a 2022-11-14 19:19:22,596:INFO: STOP 114: Pairwise 114 of, 48 Thr, 105 R, 210 T, 105 F, 0 Q TotalTime= 0h 11.00m RunTime= 0h 1.62m CPUload=2013% saphyr1a 2022-11-14 19:19:24,929:INFO: STOP 109: Pairwise 109 of, 48 Thr, 104 R, 210 T, 106 F, 0 Q TotalTime= 0h 11.04m RunTime= 0h 1.92m CPUload=1932% saphyr1b 2022-11-14 19:19:36,279:INFO: STOP 110: Pairwise 110 of, 48 Thr, 103 R, 210 T, 107 F, 0 Q TotalTime= 0h 11.23m RunTime= 0h 1.91m CPUload=2011% saphyr1b 2022-11-14 19:19:39,615:INFO: STOP 108: Pairwise 108 of, 48 Thr, 102 R, 210 T, 108 F, 0 Q TotalTime= 0h 11.28m RunTime= 0h 2.23m CPUload=1809% saphyr1c 2022-11-14 19:19:49,508:INFO: STOP 112: Pairwise 112 of, 48 Thr, 101 R, 210 T, 109 F, 0 Q TotalTime= 0h 11.45m RunTime= 0h 2.09m CPUload=1771% bionano2d 2022-11-14 19:19:49,520:INFO: STOP 103: Pairwise 103 of, 48 Thr, 100 R, 210 T, 110 F, 0 Q TotalTime= 0h 11.45m RunTime= 0h 2.88m CPUload=1610% bionano2b 2022-11-14 19:19:50,587:INFO: STOP 104: Pairwise 104 of, 48 Thr, 99 R, 210 T, 111 F, 0 Q TotalTime= 0h 11.47m RunTime= 0h 2.97m CPUload=1606% bionano2b 2022-11-14 19:19:51,641:INFO: STOP 113: Pairwise 113 of, 48 Thr, 98 R, 210 T, 112 F, 0 Q TotalTime= 0h 11.48m RunTime= 0h 2.09m CPUload=1760% bionano2d 2022-11-14 19:19:54,812:INFO: STOP 101: Pairwise 101 of, 48 Thr, 97 R, 210 T, 113 F, 0 Q TotalTime= 0h 11.54m RunTime= 0h 3.08m CPUload=1716% bionano2c 2022-11-14 19:19:54,814:INFO: STOP 99: Pairwise 99 of , 48 Thr, 96 R, 210 T, 114 F, 0 Q TotalTime= 0h 11.54m RunTime= 0h 3.15m CPUload=1704% bionano2c 2022-11-14 19:19:59,989:INFO: STOP 119: Pairwise 119 of, 48 Thr, 95 R, 210 T, 115 F, 0 Q TotalTime= 0h 11.62m RunTime= 0h 1.43m CPUload=2246% saphyr1a 2022-11-14 19:20:06,156:INFO: STOP 121: Pairwise 121 of, 48 Thr, 94 R, 210 T, 116 F, 0 Q TotalTime= 0h 11.72m RunTime= 0h 1.39m CPUload=2241% bionano2a 2022-11-14 19:20:06,160:INFO: STOP 120: Pairwise 120 of, 48 Thr, 93 R, 210 T, 117 F, 0 Q TotalTime= 0h 11.72m RunTime= 0h 1.38m CPUload=1894% bionano1b 2022-11-14 19:20:23,415:INFO: STOP 115: Pairwise 115 of, 48 Thr, 92 R, 210 T, 118 F, 0 Q TotalTime= 0h 12.01m RunTime= 0h 1.81m CPUload=1985% bionano1d 2022-11-14 19:20:50,237:INFO: STOP 127: Pairwise 127 of, 48 Thr, 91 R, 210 T, 119 F, 0 Q TotalTime= 0h 12.45m RunTime= 0h 1.40m CPUload=2455% bionano2a 2022-11-14 19:20:51,229:INFO: STOP 128: Pairwise 128 of, 48 Thr, 90 R, 210 T, 120 F, 0 Q TotalTime= 0h 12.47m RunTime= 0h 1.44m CPUload=2230% saphyr1a 2022-11-14 19:21:00,112:INFO: STOP 124: Pairwise 124 of, 48 Thr, 89 R, 210 T, 121 F, 0 Q TotalTime= 0h 12.62m RunTime= 0h 1.85m CPUload=1967% saphyr1c 2022-11-14 19:21:05,920:INFO: STOP 125: Pairwise 125 of, 48 Thr, 88 R, 210 T, 122 F, 0 Q TotalTime= 0h 12.72m RunTime= 0h 1.72m CPUload=2052% bionano1d 2022-11-14 19:21:09,679:INFO: STOP 133: Pairwise 133 of, 48 Thr, 87 R, 210 T, 123 F, 0 Q TotalTime= 0h 12.77m RunTime= 0h 1.30m CPUload=2134% bionano2d 2022-11-14 19:21:13,461:INFO: STOP 129: Pairwise 129 of, 48 Thr, 86 R, 210 T, 124 F, 0 Q TotalTime= 0h 12.84m RunTime= 0h 1.75m CPUload=2089% saphyr1b 2022-11-14 19:21:14,430:INFO: STOP 117: Pairwise 117 of, 48 Thr, 85 R, 210 T, 125 F, 0 Q TotalTime= 0h 12.86m RunTime= 0h 2.15m CPUload=1737% saphyr1d 2022-11-14 19:21:19,885:INFO: STOP 126: Pairwise 126 of, 48 Thr, 84 R, 210 T, 126 F, 0 Q TotalTime= 0h 12.95m RunTime= 0h 1.92m CPUload=1951% bionano1b 2022-11-14 19:21:19,886:INFO: STOP 123: Pairwise 123 of, 48 Thr, 83 R, 210 T, 127 F, 0 Q TotalTime= 0h 12.95m RunTime= 0h 2.15m CPUload=1759% bionano1c 2022-11-14 19:21:19,887:INFO: STOP 122: Pairwise 122 of, 48 Thr, 82 R, 210 T, 128 F, 0 Q TotalTime= 0h 12.95m RunTime= 0h 2.12m CPUload=1780% bionano1c 2022-11-14 19:21:19,889:INFO: STOP 118: Pairwise 118 of, 48 Thr, 81 R, 210 T, 129 F, 0 Q TotalTime= 0h 12.95m RunTime= 0h 2.13m CPUload=1773% saphyr1d 2022-11-14 19:21:29,493:INFO: STOP 78: Pairwise 78 of , 48 Thr, 80 R, 210 T, 130 F, 0 Q TotalTime= 0h 13.13m RunTime= 0h 2.14m CPUload=1403% bionano1a 2022-11-14 19:21:30,333:INFO: STOP 131: Pairwise 131 of, 48 Thr, 79 R, 210 T, 131 F, 0 Q TotalTime= 0h 13.12m RunTime= 0h 1.79m CPUload=2003% saphyr1c 2022-11-14 19:21:32,830:INFO: STOP 140: Pairwise 140 of, 48 Thr, 78 R, 210 T, 132 F, 0 Q TotalTime= 0h 13.16m RunTime= 0h 1.42m CPUload=2346% bionano2a 2022-11-14 19:21:34,624:INFO: STOP 130: Pairwise 130 of, 48 Thr, 77 R, 210 T, 133 F, 0 Q TotalTime= 0h 13.19m RunTime= 0h 1.91m CPUload=1920% saphyr1b 2022-11-14 19:21:39,636:INFO: STOP 138: Pairwise 138 of, 48 Thr, 76 R, 210 T, 134 F, 0 Q TotalTime= 0h 13.27m RunTime= 0h 1.63m CPUload=1972% saphyr1a 2022-11-14 19:21:47,383:INFO: STOP 135: Pairwise 135 of, 48 Thr, 75 R, 210 T, 135 F, 0 Q TotalTime= 0h 13.40m RunTime= 0h 1.90m CPUload=1981% bionano2d 2022-11-14 19:22:02,101:INFO: STOP 139: Pairwise 139 of, 48 Thr, 74 R, 210 T, 136 F, 0 Q TotalTime= 0h 13.65m RunTime= 0h 1.90m CPUload=2109% bionano1b 2022-11-14 19:22:15,741:INFO: STOP 142: Pairwise 142 of, 48 Thr, 73 R, 210 T, 137 F, 0 Q TotalTime= 0h 13.87m RunTime= 0h 1.37m CPUload=2389% bionano2a 2022-11-14 19:22:17,326:INFO: STOP 141: Pairwise 141 of, 48 Thr, 72 R, 210 T, 138 F, 0 Q TotalTime= 0h 13.90m RunTime= 0h 1.84m CPUload=1999% bionano1d 2022-11-14 19:22:17,360:INFO: STOP 132: Pairwise 132 of, 48 Thr, 71 R, 210 T, 139 F, 0 Q TotalTime= 0h 13.90m RunTime= 0h 2.37m CPUload=1970% bionano2b 2022-11-14 19:22:19,652:INFO: STOP 134: Pairwise 134 of, 48 Thr, 70 R, 210 T, 140 F, 0 Q TotalTime= 0h 13.94m RunTime= 0h 2.40m CPUload=2038% bionano2b 2022-11-14 19:22:23,497:INFO: STOP 143: Pairwise 143 of, 48 Thr, 69 R, 210 T, 141 F, 0 Q TotalTime= 0h 14.00m RunTime= 0h 1.48m CPUload=2229% saphyr1a 2022-11-14 19:22:28,056:INFO: STOP 136: Pairwise 136 of, 48 Thr, 68 R, 210 T, 142 F, 0 Q TotalTime= 0h 14.08m RunTime= 0h 2.49m CPUload=2017% bionano2c 2022-11-14 19:22:32,286:INFO: STOP 137: Pairwise 137 of, 48 Thr, 67 R, 210 T, 143 F, 0 Q TotalTime= 0h 14.15m RunTime= 0h 2.54m CPUload=2005% bionano2c 2022-11-14 19:22:33,000:INFO: STOP 145: Pairwise 145 of, 48 Thr, 66 R, 210 T, 144 F, 0 Q TotalTime= 0h 14.16m RunTime= 0h 1.37m CPUload=1976% bionano1d 2022-11-14 19:22:55,442:INFO: STOP 144: Pairwise 144 of, 48 Thr, 65 R, 210 T, 145 F, 0 Q TotalTime= 0h 14.53m RunTime= 0h 1.88m CPUload=1955% saphyr1c 2022-11-14 19:23:00,991:INFO: STOP 155: Pairwise 155 of, 48 Thr, 64 R, 210 T, 146 F, 0 Q TotalTime= 0h 14.62m RunTime= 0h 1.42m CPUload=2307% bionano2a 2022-11-14 19:23:05,925:INFO: STOP 147: Pairwise 147 of, 48 Thr, 63 R, 210 T, 147 F, 0 Q TotalTime= 0h 14.71m RunTime= 0h 1.77m CPUload=2215% saphyr1d 2022-11-14 19:23:07,200:INFO: STOP 156: Pairwise 156 of, 48 Thr, 62 R, 210 T, 148 F, 0 Q TotalTime= 0h 14.72m RunTime= 0h 1.47m CPUload=1924% saphyr1b 2022-11-14 19:23:08,618:INFO: STOP 146: Pairwise 146 of, 48 Thr, 61 R, 210 T, 149 F, 0 Q TotalTime= 0h 14.75m RunTime= 0h 1.92m CPUload=1883% bionano2d 2022-11-14 19:23:16,249:INFO: STOP 148: Pairwise 148 of, 48 Thr, 60 R, 210 T, 150 F, 0 Q TotalTime= 0h 14.88m RunTime= 0h 1.94m CPUload=1920% saphyr1b 2022-11-14 19:23:16,833:INFO: STOP 157: Pairwise 157 of, 48 Thr, 59 R, 210 T, 151 F, 0 Q TotalTime= 0h 14.88m RunTime= 0h 1.57m CPUload=2183% saphyr1a 2022-11-14 19:23:17,515:INFO: STOP 151: Pairwise 151 of, 48 Thr, 58 R, 210 T, 152 F, 0 Q TotalTime= 0h 14.90m RunTime= 0h 1.87m CPUload=2009% bionano1c 2022-11-14 19:23:29,737:INFO: STOP 153: Pairwise 153 of, 48 Thr, 57 R, 210 T, 153 F, 0 Q TotalTime= 0h 15.10m RunTime= 0h 1.90m CPUload=1907% saphyr1c 2022-11-14 19:23:29,761:INFO: STOP 149: Pairwise 149 of, 48 Thr, 56 R, 210 T, 154 F, 0 Q TotalTime= 0h 15.10m RunTime= 0h 2.06m CPUload=1801% bionano1c 2022-11-14 19:23:31,593:INFO: STOP 152: Pairwise 152 of, 48 Thr, 55 R, 210 T, 155 F, 0 Q TotalTime= 0h 15.13m RunTime= 0h 2.16m CPUload=1818% bionano1b 2022-11-14 19:23:35,825:INFO: STOP 150: Pairwise 150 of, 48 Thr, 54 R, 210 T, 156 F, 0 Q TotalTime= 0h 15.20m RunTime= 0h 2.20m CPUload=1799% saphyr1d 2022-11-14 19:23:45,813:INFO: STOP 160: Pairwise 160 of, 48 Thr, 53 R, 210 T, 157 F, 0 Q TotalTime= 0h 15.36m RunTime= 0h 1.43m CPUload=2470% bionano2a 2022-11-14 19:23:48,137:INFO: STOP 158: Pairwise 158 of, 48 Thr, 52 R, 210 T, 158 F, 0 Q TotalTime= 0h 15.40m RunTime= 0h 1.96m CPUload=1909% bionano2d 2022-11-14 19:23:50,962:INFO: STOP 154: Pairwise 154 of, 48 Thr, 51 R, 210 T, 159 F, 0 Q TotalTime= 0h 15.45m RunTime= 0h 1.60m CPUload=2307% bionano1a 2022-11-14 19:24:09,772:INFO: STOP 159: Pairwise 159 of, 48 Thr, 50 R, 210 T, 160 F, 0 Q TotalTime= 0h 15.76m RunTime= 0h 2.08m CPUload=2110% bionano1b 2022-11-14 19:24:10,276:INFO: STOP 164: Pairwise 164 of, 48 Thr, 49 R, 210 T, 161 F, 0 Q TotalTime= 0h 15.77m RunTime= 0h 1.76m CPUload=1976% saphyr1a 2022-11-14 19:24:17,802:INFO: STOP 161: Pairwise 161 of, 48 Thr, 48 R, 210 T, 162 F, 0 Q TotalTime= 0h 15.90m RunTime= 0h 1.96m CPUload=2062% bionano1d 2022-11-14 19:24:28,655:INFO: STOP 166: Pairwise 166 of, 48 Thr, 47 R, 210 T, 163 F, 0 Q TotalTime= 0h 16.08m RunTime= 0h 1.89m CPUload=2113% bionano2c 2022-11-14 19:24:29,643:INFO: STOP 169: Pairwise 169 of, 48 Thr, 46 R, 210 T, 164 F, 0 Q TotalTime= 0h 16.09m RunTime= 0h 1.43m CPUload=2271% bionano2a 2022-11-14 19:24:30,579:INFO: STOP 175: Pairwise 175 of, 48 Thr, 45 R, 210 T, 165 F, 0 Q TotalTime= 0h 16.10m RunTime= 0h 1.15m CPUload=2357% bionano1c 2022-11-14 19:24:38,405:INFO: STOP 174: Pairwise 174 of, 48 Thr, 44 R, 210 T, 166 F, 0 Q TotalTime= 0h 16.24m RunTime= 0h 1.33m CPUload=2487% saphyr1a 2022-11-14 19:24:39,446:INFO: STOP 167: Pairwise 167 of, 48 Thr, 43 R, 210 T, 167 F, 0 Q TotalTime= 0h 16.26m RunTime= 0h 2.04m CPUload=1820% bionano1d 2022-11-14 19:24:40,258:INFO: STOP 182: Pairwise 182 of, 48 Thr, 42 R, 210 T, 168 F, 0 Q TotalTime= 0h 16.26m RunTime= 0h 0.79m CPUload=3825% bionano1a 2022-11-14 19:24:47,784:INFO: STOP 168: Pairwise 168 of, 48 Thr, 41 R, 210 T, 169 F, 0 Q TotalTime= 0h 16.39m RunTime= 0h 1.81m CPUload=2010% saphyr1c 2022-11-14 19:24:51,396:INFO: STOP 162: Pairwise 162 of, 48 Thr, 40 R, 210 T, 170 F, 0 Q TotalTime= 0h 16.46m RunTime= 0h 2.52m CPUload=2076% bionano2b 2022-11-14 19:24:54,865:INFO: STOP 163: Pairwise 163 of, 48 Thr, 39 R, 210 T, 171 F, 0 Q TotalTime= 0h 16.51m RunTime= 0h 2.52m CPUload=2029% bionano2b 2022-11-14 19:24:59,092:INFO: STOP 165: Pairwise 165 of, 48 Thr, 38 R, 210 T, 172 F, 0 Q TotalTime= 0h 16.58m RunTime= 0h 2.46m CPUload=2147% bionano2c 2022-11-14 19:25:01,952:INFO: STOP 172: Pairwise 172 of, 48 Thr, 37 R, 210 T, 173 F, 0 Q TotalTime= 0h 16.63m RunTime= 0h 1.85m CPUload=2044% bionano2d 2022-11-14 19:25:09,529:INFO: STOP 180: Pairwise 180 of, 48 Thr, 36 R, 210 T, 174 F, 0 Q TotalTime= 0h 16.75m RunTime= 0h 1.35m CPUload=2343% bionano2a 2022-11-14 19:25:11,946:INFO: STOP 170: Pairwise 170 of, 48 Thr, 35 R, 210 T, 175 F, 0 Q TotalTime= 0h 16.80m RunTime= 0h 2.04m CPUload=1981% saphyr1d 2022-11-14 19:25:14,219:INFO: STOP 171: Pairwise 171 of, 48 Thr, 34 R, 210 T, 176 F, 0 Q TotalTime= 0h 16.83m RunTime= 0h 2.06m CPUload=1925% saphyr1b 2022-11-14 19:25:16,776:INFO: STOP 177: Pairwise 177 of, 48 Thr, 33 R, 210 T, 177 F, 0 Q TotalTime= 0h 16.87m RunTime= 0h 1.74m CPUload=2133% bionano1c 2022-11-14 19:25:19,299:INFO: STOP 173: Pairwise 173 of, 48 Thr, 32 R, 210 T, 178 F, 0 Q TotalTime= 0h 16.92m RunTime= 0h 2.00m CPUload=1969% saphyr1b 2022-11-14 19:25:21,740:INFO: STOP 176: Pairwise 176 of, 48 Thr, 31 R, 210 T, 179 F, 0 Q TotalTime= 0h 16.96m RunTime= 0h 1.82m CPUload=1928% saphyr1c 2022-11-14 19:25:29,455:INFO: STOP 178: Pairwise 178 of, 48 Thr, 30 R, 210 T, 180 F, 0 Q TotalTime= 0h 17.08m RunTime= 0h 1.91m CPUload=2122% bionano1b 2022-11-14 19:25:30,960:INFO: STOP 191: Pairwise 191 of, 48 Thr, 29 R, 210 T, 181 F, 0 Q TotalTime= 0h 17.10m RunTime= 0h 0.81m CPUload=3967% bionano1a 2022-11-14 19:25:43,271:INFO: STOP 183: Pairwise 183 of, 48 Thr, 28 R, 210 T, 182 F, 0 Q TotalTime= 0h 17.31m RunTime= 0h 1.52m CPUload=1986% bionano1b 2022-11-14 19:25:43,592:INFO: STOP 179: Pairwise 179 of, 48 Thr, 27 R, 210 T, 183 F, 0 Q TotalTime= 0h 17.32m RunTime= 0h 2.09m CPUload=2004% saphyr1d 2022-11-14 19:25:46,247:INFO: STOP 184: Pairwise 184 of, 48 Thr, 26 R, 210 T, 184 F, 0 Q TotalTime= 0h 17.36m RunTime= 0h 1.56m CPUload=2065% saphyr1a 2022-11-14 19:25:46,537:INFO: STOP 181: Pairwise 181 of, 48 Thr, 25 R, 210 T, 185 F, 0 Q TotalTime= 0h 17.37m RunTime= 0h 1.93m CPUload=1927% bionano2d 2022-11-14 19:25:57,830:INFO: STOP 187: Pairwise 187 of, 48 Thr, 24 R, 210 T, 186 F, 0 Q TotalTime= 0h 17.55m RunTime= 0h 1.43m CPUload=2301% bionano2a 2022-11-14 19:26:08,505:INFO: STOP 185: Pairwise 185 of, 48 Thr, 23 R, 210 T, 187 F, 0 Q TotalTime= 0h 17.73m RunTime= 0h 1.78m CPUload=2054% bionano1d 2022-11-14 19:26:10,201:INFO: STOP 190: Pairwise 190 of, 48 Thr, 22 R, 210 T, 188 F, 0 Q TotalTime= 0h 17.76m RunTime= 0h 1.47m CPUload=1892% bionano1d 2022-11-14 19:26:19,183:INFO: STOP 189: Pairwise 189 of, 48 Thr, 21 R, 210 T, 189 F, 0 Q TotalTime= 0h 17.91m RunTime= 0h 1.63m CPUload=1932% saphyr1a 2022-11-14 19:26:19,742:INFO: STOP 204: Pairwise 204 of, 48 Thr, 20 R, 210 T, 190 F, 0 Q TotalTime= 0h 17.91m RunTime= 0h 0.78m CPUload=3872% bionano1a 2022-11-14 19:26:24,230:INFO: STOP 196: Pairwise 196 of, 48 Thr, 19 R, 210 T, 191 F, 0 Q TotalTime= 0h 17.99m RunTime= 0h 1.34m CPUload=2044% bionano2d 2022-11-14 19:26:32,263:INFO: STOP 188: Pairwise 188 of, 48 Thr, 18 R, 210 T, 192 F, 0 Q TotalTime= 0h 18.13m RunTime= 0h 1.98m CPUload=1797% bionano1c 2022-11-14 19:26:40,963:INFO: STOP 186: Pairwise 186 of, 48 Thr, 17 R, 210 T, 193 F, 0 Q TotalTime= 0h 18.27m RunTime= 0h 2.16m CPUload=2079% bionano2c 2022-11-14 19:26:41,463:INFO: STOP 197: Pairwise 197 of, 48 Thr, 16 R, 210 T, 194 F, 0 Q TotalTime= 0h 18.28m RunTime= 0h 1.45m CPUload=2383% bionano2a 2022-11-14 19:26:42,231:INFO: STOP 208: Pairwise 208 of, 48 Thr, 15 R, 210 T, 195 F, 0 Q TotalTime= 0h 18.28m RunTime= 0h 0.90m CPUload=2718% saphyr1a 2022-11-14 19:26:43,520:INFO: STOP 192: Pairwise 192 of, 48 Thr, 14 R, 210 T, 196 F, 0 Q TotalTime= 0h 18.31m RunTime= 0h 1.87m CPUload=2046% saphyr1c 2022-11-14 19:26:52,484:INFO: STOP 210: Pairwise 210 of, 48 Thr, 13 R, 210 T, 197 F, 0 Q TotalTime= 0h 18.45m RunTime= 0h 0.71m CPUload=3893% bionano1d 2022-11-14 19:27:01,320:INFO: STOP 201: Pairwise 201 of, 48 Thr, 12 R, 210 T, 198 F, 0 Q TotalTime= 0h 18.60m RunTime= 0h 1.65m CPUload=1847% saphyr1b 2022-11-14 19:27:01,322:INFO: STOP 200: Pairwise 200 of, 48 Thr, 11 R, 210 T, 199 F, 0 Q TotalTime= 0h 18.60m RunTime= 0h 1.71m CPUload=2209% bionano1c 2022-11-14 19:27:06,971:INFO: STOP 207: Pairwise 207 of, 48 Thr, 10 R, 210 T, 200 F, 0 Q TotalTime= 0h 18.70m RunTime= 0h 1.31m CPUload=2826% bionano2d 2022-11-14 19:27:08,906:INFO: STOP 195: Pairwise 195 of, 48 Thr, 9 R, 210 T, 201 F, 0 Q TotalTime= 0h 18.73m RunTime= 0h 2.10m CPUload=2261% bionano2c 2022-11-14 19:27:10,372:INFO: STOP 199: Pairwise 199 of, 48 Thr, 8 R, 210 T, 202 F, 0 Q TotalTime= 0h 18.76m RunTime= 0h 1.89m CPUload=2133% saphyr1b 2022-11-14 19:27:10,715:INFO: STOP 202: Pairwise 202 of, 48 Thr, 7 R, 210 T, 203 F, 0 Q TotalTime= 0h 18.76m RunTime= 0h 1.78m CPUload=2053% saphyr1c 2022-11-14 19:27:12,445:INFO: STOP 209: Pairwise 209 of, 48 Thr, 6 R, 210 T, 204 F, 0 Q TotalTime= 0h 18.79m RunTime= 0h 1.21m CPUload=2629% bionano2a 2022-11-14 19:27:22,491:INFO: STOP 205: Pairwise 205 of, 48 Thr, 5 R, 210 T, 205 F, 0 Q TotalTime= 0h 18.96m RunTime= 0h 1.60m CPUload=1806% saphyr1d 2022-11-14 19:27:22,504:INFO: STOP 198: Pairwise 198 of, 48 Thr, 4 R, 210 T, 206 F, 0 Q TotalTime= 0h 18.96m RunTime= 0h 2.14m CPUload=1951% saphyr1d 2022-11-14 19:27:25,165:INFO: STOP 193: Pairwise 193 of, 48 Thr, 3 R, 210 T, 207 F, 0 Q TotalTime= 0h 19.01m RunTime= 0h 2.51m CPUload=2041% bionano2b 2022-11-14 19:27:28,201:INFO: STOP 194: Pairwise 194 of, 48 Thr, 2 R, 210 T, 208 F, 0 Q TotalTime= 0h 19.06m RunTime= 0h 2.50m CPUload=2103% bionano2b 2022-11-14 19:27:35,330:INFO: STOP 203: Pairwise 203 of, 48 Thr, 1 R, 210 T, 209 F, 0 Q TotalTime= 0h 19.17m RunTime= 0h 2.06m CPUload=1907% bionano1b 2022-11-14 19:27:43,363:INFO: STOP 206: Pairwise 206 of, 48 Thr, 0 R, 210 T, 210 F, 0 Q TotalTime= 0h 19.30m RunTime= 0h 1.96m CPUload=1929% bionano1b 2022-11-14 19:27:43,364:INFO: Finished Multi-Threaded Process: Pairwise 2022-11-14 19:27:43,391:INFO: Pairwise 1 of 210 completed in: 87.5s Result Found Pairwise 2 of 210 completed in: 147.3s Result Found Pairwise 3 of 210 completed in: 152.6s Result Found Pairwise 4 of 210 completed in: 145.2s Result Found Pairwise 5 of 210 completed in: 160.6s Result Found Pairwise 6 of 210 completed in: 130.0s Result Found Pairwise 7 of 210 completed in: 145.1s Result Found Pairwise 8 of 210 completed in: 156.5s Result Found Pairwise 9 of 210 completed in: 134.2s Result Found Pairwise 10 of 210 completed in: 132.0s Result Found Pairwise 11 of 210 completed in: 160.4s Result Found Pairwise 12 of 210 completed in: 147.0s Result Found Pairwise 13 of 210 completed in: 152.3s Result Found Pairwise 14 of 210 completed in: 140.6s Result Found Pairwise 15 of 210 completed in: 146.9s Result Found Pairwise 16 of 210 completed in: 146.9s Result Found Pairwise 17 of 210 completed in: 160.3s Result Found Pairwise 18 of 210 completed in: 133.9s Result Found Pairwise 19 of 210 completed in: 103.6s Result Found Pairwise 20 of 210 completed in: 117.3s Result Found Pairwise 21 of 210 completed in: 75.8s Result Found Pairwise 22 of 210 completed in: 112.8s Result Found Pairwise 23 of 210 completed in: 101.2s Result Found Pairwise 24 of 210 completed in: 115.0s Result Found Pairwise 25 of 210 completed in: 156.0s Result Found Pairwise 26 of 210 completed in: 217.1s Result Found Pairwise 27 of 210 completed in: 180.2s Result Found Pairwise 28 of 210 completed in: 197.2s Result Found Pairwise 29 of 210 completed in: 211.0s Result Found Pairwise 30 of 210 completed in: 224.9s Result Found Pairwise 31 of 210 completed in: 216.9s Result Found Pairwise 32 of 210 completed in: 271.8s Result Found Pairwise 33 of 210 completed in: 273.6s Result Found Pairwise 34 of 210 completed in: 283.0s Result Found Pairwise 35 of 210 completed in: 282.9s Result Found Pairwise 36 of 210 completed in: 286.0s Result Found Pairwise 37 of 210 completed in: 286.0s Result Found Pairwise 38 of 210 completed in: 271.5s Result Found Pairwise 39 of 210 completed in: 270.5s Result Found Pairwise 40 of 210 completed in: 285.9s Result Found Pairwise 41 of 210 completed in: 285.9s Result Found Pairwise 42 of 210 completed in: 287.7s Result Found Pairwise 43 of 210 completed in: 298.3s Result Found Pairwise 44 of 210 completed in: 300.0s Result Found Pairwise 45 of 210 completed in: 316.6s Result Found Pairwise 46 of 210 completed in: 245.0s Result Found Pairwise 47 of 210 completed in: 324.0s Result Found Pairwise 48 of 210 completed in: 309.6s Result Found Pairwise 49 of 210 completed in: 307.8s Result Found Pairwise 50 of 210 completed in: 262.4s Result Found Pairwise 51 of 210 completed in: 280.5s Result Found Pairwise 52 of 210 completed in: 292.7s Result Found Pairwise 53 of 210 completed in: 378.9s Result Found Pairwise 54 of 210 completed in: 318.6s Result Found Pairwise 55 of 210 completed in: 318.6s Result Found Pairwise 56 of 210 completed in: 352.6s Result Found Pairwise 57 of 210 completed in: 352.6s Result Found Pairwise 58 of 210 completed in: 385.4s Result Found Pairwise 59 of 210 completed in: 387.0s Result Found Pairwise 60 of 210 completed in: 406.2s Result Found Pairwise 61 of 210 completed in: 415.2s Result Found Pairwise 62 of 210 completed in: 437.0s Result Found Pairwise 63 of 210 completed in: 421.4s Result Found Pairwise 64 of 210 completed in: 436.9s Result Found Pairwise 65 of 210 completed in: 413.4s Result Found Pairwise 66 of 210 completed in: 399.6s Result Found Pairwise 67 of 210 completed in: 432.1s Result Found Pairwise 68 of 210 completed in: 432.1s Result Found Pairwise 69 of 210 completed in: 381.7s Result Found Pairwise 70 of 210 completed in: 447.2s Result Found Pairwise 71 of 210 completed in: 447.2s Result Found Pairwise 72 of 210 completed in: 481.4s Result Found Pairwise 73 of 210 completed in: 488.2s Result Found Pairwise 74 of 210 completed in: 505.6s Result Found Pairwise 75 of 210 completed in: 391.3s Result Found Pairwise 76 of 210 completed in: 413.1s Result Found Pairwise 77 of 210 completed in: 505.6s Result Found Pairwise 78 of 210 completed in: 787.8s Result Found Pairwise 79 of 210 completed in: 460.4s Result Found Pairwise 80 of 210 completed in: 540.5s Result Found Pairwise 81 of 210 completed in: 478.1s Result Found Pairwise 82 of 210 completed in: 536.4s Result Found Pairwise 83 of 210 completed in: 489.3s Result Found Pairwise 84 of 210 completed in: 505.3s Result Found Pairwise 85 of 210 completed in: 536.3s Result Found Pairwise 86 of 210 completed in: 558.9s Result Found Pairwise 87 of 210 completed in: 510.8s Result Found Pairwise 88 of 210 completed in: 534.4s Result Found Pairwise 89 of 210 completed in: 558.8s Result Found Pairwise 90 of 210 completed in: 546.8s Result Found Pairwise 91 of 210 completed in: 536.1s Result Found Pairwise 92 of 210 completed in: 575.6s Result Found Pairwise 93 of 210 completed in: 584.5s Result Found Pairwise 94 of 210 completed in: 606.9s Result Found Pairwise 95 of 210 completed in: 619.2s Result Found Pairwise 96 of 210 completed in: 620.4s Result Found Pairwise 97 of 210 completed in: 561.2s Result Found Pairwise 98 of 210 completed in: 579.3s Result Found Pairwise 99 of 210 completed in: 692.5s Result Found Pairwise 100 of 210 completed in: 645.0s Result Found Pairwise 101 of 210 completed in: 692.4s Result Found Pairwise 102 of 210 completed in: 614.1s Result Found Pairwise 103 of 210 completed in: 687.1s Result Found Pairwise 104 of 210 completed in: 688.1s Result Found Pairwise 105 of 210 completed in: 609.0s Result Found Pairwise 106 of 210 completed in: 614.0s Result Found Pairwise 107 of 210 completed in: 655.4s Result Found Pairwise 108 of 210 completed in: 677.1s Result Found Pairwise 109 of 210 completed in: 662.4s Result Found Pairwise 110 of 210 completed in: 673.7s Result Found Pairwise 111 of 210 completed in: 658.8s Result Found Pairwise 112 of 210 completed in: 686.9s Result Found Pairwise 113 of 210 completed in: 689.0s Result Found Pairwise 114 of 210 completed in: 659.9s Result Found Pairwise 115 of 210 completed in: 720.7s Result Found Pairwise 116 of 210 completed in: 659.8s Result Found Pairwise 117 of 210 completed in: 771.6s Result Found Pairwise 118 of 210 completed in: 777.1s Result Found Pairwise 119 of 210 completed in: 697.1s Result Found Pairwise 120 of 210 completed in: 703.3s Result Found Pairwise 121 of 210 completed in: 703.3s Result Found Pairwise 122 of 210 completed in: 777.0s Result Found Pairwise 123 of 210 completed in: 776.9s Result Found Pairwise 124 of 210 completed in: 757.1s Result Found Pairwise 125 of 210 completed in: 762.9s Result Found Pairwise 126 of 210 completed in: 776.8s Result Found Pairwise 127 of 210 completed in: 747.2s Result Found Pairwise 128 of 210 completed in: 748.1s Result Found Pairwise 129 of 210 completed in: 770.3s Result Found Pairwise 130 of 210 completed in: 791.5s Result Found Pairwise 131 of 210 completed in: 787.2s Result Found Pairwise 132 of 210 completed in: 834.2s Result Found Pairwise 133 of 210 completed in: 766.5s Result Found Pairwise 134 of 210 completed in: 836.4s Result Found Pairwise 135 of 210 completed in: 804.1s Result Found Pairwise 136 of 210 completed in: 844.8s Result Found Pairwise 137 of 210 completed in: 849.0s Result Found Pairwise 138 of 210 completed in: 796.3s Result Found Pairwise 139 of 210 completed in: 818.7s Result Found Pairwise 140 of 210 completed in: 789.4s Result Found Pairwise 141 of 210 completed in: 833.9s Result Found Pairwise 142 of 210 completed in: 832.3s Result Found Pairwise 143 of 210 completed in: 840.0s Result Found Pairwise 144 of 210 completed in: 872.0s Result Found Pairwise 145 of 210 completed in: 849.5s Result Found Pairwise 146 of 210 completed in: 885.1s Result Found Pairwise 147 of 210 completed in: 882.4s Result Found Pairwise 148 of 210 completed in: 892.7s Result Found Pairwise 149 of 210 completed in: 906.1s Result Found Pairwise 150 of 210 completed in: 912.2s Result Found Pairwise 151 of 210 completed in: 893.8s Result Found Pairwise 152 of 210 completed in: 907.9s Result Found Pairwise 153 of 210 completed in: 906.0s Result Found Pairwise 154 of 210 completed in: 927.2s Result Found Pairwise 155 of 210 completed in: 877.2s Result Found Pairwise 156 of 210 completed in: 883.4s Result Found Pairwise 157 of 210 completed in: 893.0s Result Found Pairwise 158 of 210 completed in: 924.3s Result Found Pairwise 159 of 210 completed in: 945.9s Result Found Pairwise 160 of 210 completed in: 921.9s Result Found Pairwise 161 of 210 completed in: 953.8s Result Found Pairwise 162 of 210 completed in: 987.4s Result Found Pairwise 163 of 210 completed in: 990.8s Result Found Pairwise 164 of 210 completed in: 946.2s Result Found Pairwise 165 of 210 completed in: 995.0s Result Found Pairwise 166 of 210 completed in: 964.6s Result Found Pairwise 167 of 210 completed in: 975.3s Result Found Pairwise 168 of 210 completed in: 983.6s Result Found Pairwise 169 of 210 completed in: 965.5s Result Found Pairwise 170 of 210 completed in: 1007.7s Result Found Pairwise 171 of 210 completed in: 1010.0s Result Found Pairwise 172 of 210 completed in: 997.7s Result Found Pairwise 173 of 210 completed in: 1015.0s Result Found Pairwise 174 of 210 completed in: 974.1s Result Found Pairwise 175 of 210 completed in: 966.2s Result Found Pairwise 176 of 210 completed in: 1017.3s Result Found Pairwise 177 of 210 completed in: 1012.3s Result Found Pairwise 178 of 210 completed in: 1025.0s Result Found Pairwise 179 of 210 completed in: 1039.1s Result Found Pairwise 180 of 210 completed in: 1005.0s Result Found Pairwise 181 of 210 completed in: 1042.0s Result Found Pairwise 182 of 210 completed in: 975.7s Result Found Pairwise 183 of 210 completed in: 1038.7s Result Found Pairwise 184 of 210 completed in: 1041.6s Result Found Pairwise 185 of 210 completed in: 1063.9s Result Found Pairwise 186 of 210 completed in: 1096.3s Result Found Pairwise 187 of 210 completed in: 1053.1s Result Found Pairwise 188 of 210 completed in: 1087.5s Result Found Pairwise 189 of 210 completed in: 1074.4s Result Found Pairwise 190 of 210 completed in: 1065.4s Result Found Pairwise 191 of 210 completed in: 1026.2s Result Found Pairwise 192 of 210 completed in: 1098.7s Result Found Pairwise 193 of 210 completed in: 1140.3s Result Found Pairwise 194 of 210 completed in: 1143.3s Result Found Pairwise 195 of 210 completed in: 1124.0s Result Found Pairwise 196 of 210 completed in: 1079.3s Result Found Pairwise 197 of 210 completed in: 1096.5s Result Found Pairwise 198 of 210 completed in: 1137.5s Result Found Pairwise 199 of 210 completed in: 1125.4s Result Found Pairwise 200 of 210 completed in: 1116.3s Result Found Pairwise 201 of 210 completed in: 1116.3s Result Found Pairwise 202 of 210 completed in: 1125.6s Result Found Pairwise 203 of 210 completed in: 1150.2s Result Found Pairwise 204 of 210 completed in: 1074.6s Result Found Pairwise 205 of 210 completed in: 1137.3s Result Found Pairwise 206 of 210 completed in: 1158.2s Result Found Pairwise 207 of 210 completed in: 1121.8s Result Found Pairwise 208 of 210 completed in: 1097.0s Result Found Pairwise 209 of 210 completed in: 1127.2s Result Found Pairwise 210 of 210 completed in: 1107.2s Result Found Completed 210 jobs on 56 threads Clock time: 0h 19.40m CPU time : 37h 10.64m Begin machine parsable segment for: Pairwise time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_pairwise1of210 87.53610 1626.90 40.90 1:17.25 2158% 1529332 Mon Nov 14 13:03:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise2of210 147.31775 2215.50 59.72 2:22.15 1600% 1788324 Mon Nov 14 13:33:23 CST 2022 time_line jobs+10230251+startPipeline_pairwise3of210 152.57126 2263.25 61.34 2:19.44 1666% 1790868 Mon Nov 14 13:23:51 CST 2022 time_line jobs+10230251+startPipeline_pairwise4of210 145.17316 2197.33 59.58 2:17.33 1643% 1778560 Mon Nov 14 13:27:05 CST 2022 time_line jobs+10230251+startPipeline_pairwise5of210 160.59108 2559.34 59.62 2:30.01 1745% 1788012 Mon Nov 14 13:24:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise6of210 129.95568 2256.53 60.78 2:05.08 1852% 1791720 Mon Nov 14 13:23:29 CST 2022 time_line jobs+10230251+startPipeline_pairwise7of210 145.08654 2176.12 61.70 2:15.86 1647% 1789692 Mon Nov 14 13:23:41 CST 2022 time_line jobs+10230251+startPipeline_pairwise8of210 156.49415 2674.40 62.80 2:29.60 1829% 1784312 Mon Nov 14 13:23:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise9of210 134.23750 2215.85 58.62 2:10.85 1738% 1792936 Mon Nov 14 13:23:34 CST 2022 time_line jobs+10230251+startPipeline_pairwise10of210 132.02122 2230.11 63.68 2:10.17 1762% 1791688 Mon Nov 14 13:23:34 CST 2022 time_line jobs+10230251+startPipeline_pairwise11of210 160.44156 2525.30 61.09 2:29.91 1725% 1793224 Mon Nov 14 13:24:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise12of210 147.02676 2232.21 61.21 2:23.03 1603% 1792444 Mon Nov 14 13:27:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise13of210 152.29041 2221.41 62.44 2:19.45 1637% 1778852 Mon Nov 14 13:23:51 CST 2022 time_line jobs+10230251+startPipeline_pairwise14of210 140.55887 2167.44 57.70 2:14.44 1655% 1779204 Mon Nov 14 13:33:15 CST 2022 time_line jobs+10230251+startPipeline_pairwise15of210 146.93468 2236.91 60.77 2:09.05 1780% 1792048 Mon Nov 14 13:04:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise16of210 146.90855 2195.89 57.82 2:06.70 1778% 1777988 Mon Nov 14 13:23:47 CST 2022 time_line jobs+10230251+startPipeline_pairwise17of210 160.28588 2723.72 62.64 2:20.41 1984% 1790312 Mon Nov 14 13:24:00 CST 2022 time_line jobs+10230251+startPipeline_pairwise18of210 133.92820 2200.60 60.48 2:08.37 1761% 1789640 Mon Nov 14 13:23:34 CST 2022 time_line jobs+10230251+startPipeline_pairwise19of210 103.63250 1896.27 45.09 1:37.57 1989% 1785380 Mon Nov 14 13:23:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise20of210 117.34870 1889.71 52.51 1:52.03 1733% 1792112 Mon Nov 14 13:23:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise21of210 75.79585 1448.30 34.07 1:13.10 2027% 1523200 Mon Nov 14 13:22:38 CST 2022 time_line jobs+10230251+startPipeline_pairwise22of210 112.79284 1990.37 52.71 1:49.65 1863% 1791916 Mon Nov 14 13:23:14 CST 2022 time_line jobs+10230251+startPipeline_pairwise23of210 101.22040 1953.32 56.99 1:36.43 2084% 1780032 Mon Nov 14 13:09:57 CST 2022 time_line jobs+10230251+startPipeline_pairwise24of210 114.99254 1997.22 60.77 1:51.70 1842% 1790636 Mon Nov 14 13:10:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise25of210 156.02825 1936.99 47.13 1:16.72 2586% 1787672 Mon Nov 14 13:23:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise26of210 217.09198 2157.51 58.64 2:01.08 1830% 1789316 Mon Nov 14 13:05:25 CST 2022 time_line jobs+10230251+startPipeline_pairwise27of210 180.17989 1931.65 56.68 1:17.16 2576% 1783736 Mon Nov 14 13:11:17 CST 2022 time_line jobs+10230251+startPipeline_pairwise28of210 197.19882 1958.21 47.32 1:27.15 2301% 1792732 Mon Nov 14 13:24:38 CST 2022 time_line jobs+10230251+startPipeline_pairwise29of210 211.00645 1967.12 53.44 1:35.41 2117% 1789444 Mon Nov 14 13:24:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise30of210 224.90525 1989.33 60.52 1:48.49 1889% 1793448 Mon Nov 14 13:12:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise31of210 216.92053 1958.06 49.96 1:38.26 2043% 1789228 Mon Nov 14 13:24:58 CST 2022 time_line jobs+10230251+startPipeline_pairwise32of210 271.76323 2517.90 58.75 2:13.49 1930% 1777088 Mon Nov 14 13:25:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise33of210 273.62593 2513.98 61.21 2:17.78 1869% 1776884 Mon Nov 14 13:25:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise34of210 282.96352 2299.04 66.09 2:25.33 1627% 1792492 Mon Nov 14 13:26:04 CST 2022 time_line jobs+10230251+startPipeline_pairwise35of210 282.93624 2261.70 62.82 2:25.35 1599% 1779820 Mon Nov 14 13:26:04 CST 2022 time_line jobs+10230251+startPipeline_pairwise36of210 286.00087 2267.13 61.16 2:14.25 1734% 1790488 Mon Nov 14 13:35:38 CST 2022 time_line jobs+10230251+startPipeline_pairwise37of210 285.97446 2295.04 60.61 2:17.99 1707% 1789892 Mon Nov 14 13:26:06 CST 2022 time_line jobs+10230251+startPipeline_pairwise38of210 271.53894 2243.12 57.53 1:59.10 1931% 1781512 Mon Nov 14 13:29:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise39of210 270.51263 2197.25 55.15 1:51.66 2017% 1789124 Mon Nov 14 13:06:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise40of210 285.89923 1636.99 43.12 2:06.71 1325% 1525668 Mon Nov 14 13:26:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise41of210 285.87303 2202.12 57.14 2:14.33 1681% 1779528 Mon Nov 14 13:35:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise42of210 287.67166 2242.93 57.03 2:13.62 1721% 1785488 Mon Nov 14 13:29:31 CST 2022 time_line jobs+10230251+startPipeline_pairwise43of210 298.28064 2264.69 63.11 2:21.69 1642% 1790208 Mon Nov 14 13:26:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise44of210 300.00697 2224.10 65.68 2:22.86 1602% 1792604 Mon Nov 14 13:26:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise45of210 316.63531 2920.16 65.25 2:34.36 1934% 1786892 Mon Nov 14 13:26:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise46of210 245.00406 1853.34 44.05 1:23.26 2278% 1791316 Mon Nov 14 13:25:24 CST 2022 time_line jobs+10230251+startPipeline_pairwise47of210 324.00285 2989.99 68.81 2:40.37 1907% 1791676 Mon Nov 14 13:26:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise48of210 309.56269 2476.97 59.57 2:26.35 1733% 1795664 Mon Nov 14 13:26:31 CST 2022 time_line jobs+10230251+startPipeline_pairwise49of210 307.82248 2389.23 63.31 2:23.93 1703% 1791876 Mon Nov 14 13:26:29 CST 2022 time_line jobs+10230251+startPipeline_pairwise50of210 262.38141 1829.32 57.02 1:19.33 2377% 1778492 Mon Nov 14 13:12:39 CST 2022 time_line jobs+10230251+startPipeline_pairwise51of210 280.53010 1810.62 44.76 1:19.38 2337% 1774840 Mon Nov 14 13:26:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise52of210 292.67320 1917.76 48.26 1:16.89 2556% 1792624 Mon Nov 14 13:26:15 CST 2022 time_line jobs+10230251+startPipeline_pairwise53of210 378.90287 2190.42 56.54 2:07.88 1756% 1780464 Mon Nov 14 13:08:13 CST 2022 time_line jobs+10230251+startPipeline_pairwise54of210 318.62672 1888.58 50.14 1:33.97 2063% 1792728 Mon Nov 14 13:26:39 CST 2022 time_line jobs+10230251+startPipeline_pairwise55of210 318.59907 1831.44 64.25 1:29.66 2114% 1792212 Mon Nov 14 13:13:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise56of210 352.58553 1809.78 48.16 1:14.86 2481% 1783492 Mon Nov 14 13:26:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise57of210 352.55847 1873.16 60.05 1:29.43 2161% 1789100 Mon Nov 14 13:14:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise58of210 385.40533 1545.67 37.64 1:41.63 1557% 1514448 Mon Nov 14 13:08:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise59of210 387.00751 2124.47 62.12 1:42.17 2139% 1787688 Mon Nov 14 13:31:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise60of210 406.21266 2421.25 61.26 2:11.13 1893% 1791060 Mon Nov 14 13:28:08 CST 2022 time_line jobs+10230251+startPipeline_pairwise61of210 415.15133 2443.10 64.21 2:12.87 1887% 1790444 Mon Nov 14 13:28:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise62of210 436.96231 2244.01 60.05 2:25.24 1586% 1786716 Mon Nov 14 13:38:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise63of210 421.37212 2179.36 63.60 2:11.94 1699% 1792768 Mon Nov 14 13:28:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise64of210 436.90983 2255.05 59.82 2:25.19 1594% 1790776 Mon Nov 14 13:38:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise65of210 413.41274 2157.91 62.91 2:07.40 1743% 1793520 Mon Nov 14 13:28:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise66of210 399.62342 2198.89 59.38 1:52.31 2010% 1790484 Mon Nov 14 13:28:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise67of210 432.09634 2159.89 59.38 2:12.57 1674% 1775012 Mon Nov 14 13:28:27 CST 2022 time_line jobs+10230251+startPipeline_pairwise68of210 432.07054 2101.53 55.30 2:14.86 1599% 1775084 Mon Nov 14 13:31:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise69of210 381.68940 1912.24 48.91 1:24.59 2318% 1790452 Mon Nov 14 13:27:43 CST 2022 time_line jobs+10230251+startPipeline_pairwise70of210 447.23014 2180.34 62.95 2:26.92 1526% 1780036 Mon Nov 14 13:28:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise71of210 447.20525 2177.20 60.26 2:24.98 1543% 1787944 Mon Nov 14 13:28:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise72of210 481.43786 2896.64 63.25 2:44.40 1800% 1792788 Mon Nov 14 13:29:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise73of210 488.18208 3021.95 65.33 2:53.32 1781% 1785764 Mon Nov 14 13:29:27 CST 2022 time_line jobs+10230251+startPipeline_pairwise74of210 505.62505 2886.05 64.56 3:01.05 1629% 1786720 Mon Nov 14 13:29:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise75of210 391.29386 1452.71 33.27 1:09.28 2144% 1522168 Mon Nov 14 13:27:53 CST 2022 time_line jobs+10230251+startPipeline_pairwise76of210 413.06926 1997.66 61.07 1:31.86 2241% 1791840 Mon Nov 14 13:15:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise77of210 505.55040 3158.73 65.94 2:48.29 1916% 1790660 Mon Nov 14 13:29:39 CST 2022 time_line jobs+10230251+startPipeline_pairwise78of210 787.81354 1755.61 43.61 2:08.16 1403% 1786792 Mon Nov 14 13:34:15 CST 2022 time_line jobs+10230251+startPipeline_pairwise79of210 460.36527 1978.56 71.53 1:45.33 1946% 1790976 Mon Nov 14 13:15:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise80of210 540.54872 2290.74 63.55 2:31.90 1549% 1789168 Mon Nov 14 13:10:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise81of210 478.10332 2230.41 51.28 1:32.60 2463% 1794972 Mon Nov 14 13:29:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise82of210 536.38857 2324.56 63.44 2:21.07 1692% 1791580 Mon Nov 14 13:10:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise83of210 489.29005 2342.66 57.05 1:37.40 2463% 1779848 Mon Nov 14 13:32:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise84of210 505.32303 2205.07 49.11 1:50.15 2046% 1776516 Mon Nov 14 13:29:46 CST 2022 time_line jobs+10230251+startPipeline_pairwise85of210 536.28878 2246.76 58.15 1:58.80 1940% 1790928 Mon Nov 14 13:30:09 CST 2022 time_line jobs+10230251+startPipeline_pairwise86of210 558.90877 2346.71 60.74 2:19.84 1721% 1778548 Mon Nov 14 13:30:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise87of210 510.83500 1984.57 62.75 1:37.69 2095% 1790828 Mon Nov 14 13:16:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise88of210 534.44996 2219.66 59.41 1:56.68 1953% 1789544 Mon Nov 14 13:30:17 CST 2022 time_line jobs+10230251+startPipeline_pairwise89of210 558.81909 2294.09 63.55 2:19.50 1690% 1782352 Mon Nov 14 13:30:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise90of210 546.82420 2180.90 59.63 2:01.71 1840% 1791060 Mon Nov 14 13:30:31 CST 2022 time_line jobs+10230251+startPipeline_pairwise91of210 536.06251 1657.19 36.55 1:18.83 2148% 1525040 Mon Nov 14 13:33:34 CST 2022 time_line jobs+10230251+startPipeline_pairwise92of210 575.61086 2223.67 56.47 2:05.13 1822% 1790324 Mon Nov 14 13:30:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise93of210 584.46307 2423.88 61.13 2:15.01 1840% 1784808 Mon Nov 14 13:40:43 CST 2022 time_line jobs+10230251+startPipeline_pairwise94of210 606.90104 2616.09 55.92 2:22.22 1878% 1791456 Mon Nov 14 13:40:51 CST 2022 time_line jobs+10230251+startPipeline_pairwise95of210 619.24616 2307.91 66.86 2:39.73 1486% 1794044 Mon Nov 14 13:31:33 CST 2022 time_line jobs+10230251+startPipeline_pairwise96of210 620.41913 2299.58 64.82 2:30.72 1568% 1793840 Mon Nov 14 13:31:27 CST 2022 time_line jobs+10230251+startPipeline_pairwise97of210 561.15374 1999.75 63.74 1:38.12 2102% 1789740 Mon Nov 14 13:17:40 CST 2022 time_line jobs+10230251+startPipeline_pairwise98of210 579.27775 2197.25 50.07 1:34.58 2375% 1774832 Mon Nov 14 13:31:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise99of210 692.48910 3154.99 66.81 3:08.98 1704% 1776812 Mon Nov 14 13:32:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise100of210 645.01096 2273.42 54.61 2:12.06 1762% 1791620 Mon Nov 14 13:35:25 CST 2022 time_line jobs+10230251+startPipeline_pairwise101of210 692.43748 3099.25 69.38 3:04.55 1716% 1781536 Mon Nov 14 13:32:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise102of210 614.10556 2162.95 51.46 1:44.58 2117% 1790248 Mon Nov 14 13:31:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise103of210 687.09635 2724.30 61.85 2:53.01 1610% 1789552 Mon Nov 14 13:32:47 CST 2022 time_line jobs+10230251+startPipeline_pairwise104of210 688.13825 2793.27 63.97 2:57.89 1606% 1784548 Mon Nov 14 13:32:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise105of210 609.02488 1948.67 74.70 1:36.04 2106% 1792544 Mon Nov 14 13:18:29 CST 2022 time_line jobs+10230251+startPipeline_pairwise106of210 613.98370 1594.55 44.31 1:14.21 2208% 1524048 Mon Nov 14 13:31:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise107of210 655.41944 2190.34 57.79 1:52.68 1994% 1786304 Mon Nov 14 13:32:19 CST 2022 time_line jobs+10230251+startPipeline_pairwise108of210 677.06841 2365.95 54.51 2:13.77 1809% 1791668 Mon Nov 14 13:36:04 CST 2022 time_line jobs+10230251+startPipeline_pairwise109of210 662.35863 2172.07 52.38 1:55.09 1932% 1792948 Mon Nov 14 13:12:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise110of210 673.67763 2247.75 56.50 1:54.53 2011% 1791888 Mon Nov 14 13:13:10 CST 2022 time_line jobs+10230251+startPipeline_pairwise111of210 658.83354 2159.63 56.60 1:47.81 2055% 1791132 Mon Nov 14 13:32:22 CST 2022 time_line jobs+10230251+startPipeline_pairwise112of210 686.85659 2159.61 63.50 2:05.46 1771% 1778168 Mon Nov 14 13:32:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise113of210 688.96527 2145.94 63.30 2:05.51 1760% 1777116 Mon Nov 14 13:32:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise114of210 659.89519 1893.83 67.26 1:37.40 2013% 1789220 Mon Nov 14 13:19:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise115of210 720.68828 2093.60 57.40 1:48.31 1985% 1781808 Mon Nov 14 13:33:24 CST 2022 time_line jobs+10230251+startPipeline_pairwise116of210 659.80950 1968.54 46.87 1:15.25 2678% 1790936 Mon Nov 14 13:32:23 CST 2022 time_line jobs+10230251+startPipeline_pairwise117of210 771.63168 2183.44 59.26 2:09.11 1737% 1790580 Mon Nov 14 13:43:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise118of210 777.06563 2199.74 64.31 2:07.67 1773% 1783888 Mon Nov 14 13:43:55 CST 2022 time_line jobs+10230251+startPipeline_pairwise119of210 697.14057 1856.26 64.23 1:25.49 2246% 1790924 Mon Nov 14 13:19:57 CST 2022 time_line jobs+10230251+startPipeline_pairwise120of210 703.28842 1523.12 41.46 1:22.59 1894% 1520068 Mon Nov 14 13:33:08 CST 2022 time_line jobs+10230251+startPipeline_pairwise121of210 703.26114 1827.49 42.86 1:23.43 2241% 1792084 Mon Nov 14 13:33:07 CST 2022 time_line jobs+10230251+startPipeline_pairwise122of210 776.96792 2204.66 62.78 2:07.38 1780% 1791764 Mon Nov 14 13:34:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise123of210 776.94148 2201.17 67.47 2:08.95 1759% 1793072 Mon Nov 14 13:34:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise124of210 757.14184 2118.35 59.12 1:50.64 1967% 1790304 Mon Nov 14 13:37:26 CST 2022 time_line jobs+10230251+startPipeline_pairwise125of210 762.90330 2065.87 57.25 1:43.45 2052% 1776984 Mon Nov 14 13:34:07 CST 2022 time_line jobs+10230251+startPipeline_pairwise126of210 776.84425 2190.32 60.00 1:55.29 1951% 1774604 Mon Nov 14 13:34:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise127of210 747.17320 2012.01 47.22 1:23.84 2455% 1789572 Mon Nov 14 13:33:51 CST 2022 time_line jobs+10230251+startPipeline_pairwise128of210 748.14061 1869.15 64.17 1:26.68 2230% 1776520 Mon Nov 14 13:20:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise129of210 770.34842 2136.10 63.55 1:45.29 2089% 1789724 Mon Nov 14 13:14:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise130of210 791.48592 2134.87 62.78 1:54.43 1920% 1789620 Mon Nov 14 13:15:08 CST 2022 time_line jobs+10230251+startPipeline_pairwise131of210 787.17085 2095.45 57.99 1:47.47 2003% 1788244 Mon Nov 14 13:37:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise132of210 834.17335 2740.40 65.26 2:22.40 1970% 1788480 Mon Nov 14 13:35:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise133of210 766.46791 1627.18 42.39 1:18.22 2134% 1526176 Mon Nov 14 13:34:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise134of210 836.41641 2863.95 67.30 2:23.81 2038% 1793468 Mon Nov 14 13:35:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise135of210 804.12171 2198.94 59.70 1:53.99 1981% 1794188 Mon Nov 14 13:34:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise136of210 844.77079 2949.67 68.58 2:29.62 2017% 1791472 Mon Nov 14 13:35:29 CST 2022 time_line jobs+10230251+startPipeline_pairwise137of210 848.97545 2990.91 61.79 2:32.22 2005% 1780256 Mon Nov 14 13:35:32 CST 2022 time_line jobs+10230251+startPipeline_pairwise138of210 796.30097 1865.98 61.65 1:37.73 1972% 1776828 Mon Nov 14 13:21:37 CST 2022 time_line jobs+10230251+startPipeline_pairwise139of210 818.74037 2331.55 67.24 1:53.71 2109% 1792356 Mon Nov 14 13:35:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise140of210 789.44459 1946.47 49.43 1:25.05 2346% 1781108 Mon Nov 14 13:34:35 CST 2022 time_line jobs+10230251+startPipeline_pairwise141of210 833.91584 2148.12 61.96 1:50.51 1999% 1789960 Mon Nov 14 13:35:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise142of210 832.30655 1921.92 48.10 1:22.43 2389% 1788024 Mon Nov 14 13:35:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise143of210 840.03754 1911.88 67.32 1:28.75 2229% 1784524 Mon Nov 14 13:22:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise144of210 871.95770 2137.07 64.44 1:52.55 1955% 1786532 Mon Nov 14 13:39:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise145of210 849.49140 1589.25 37.74 1:22.32 1976% 1525684 Mon Nov 14 13:35:34 CST 2022 time_line jobs+10230251+startPipeline_pairwise146of210 885.08557 2103.57 62.75 1:55.03 1883% 1794280 Mon Nov 14 13:36:09 CST 2022 time_line jobs+10230251+startPipeline_pairwise147of210 882.36816 2284.50 61.83 1:45.92 2215% 1791624 Mon Nov 14 13:45:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise148of210 892.66775 2172.50 58.08 1:56.14 1920% 1777684 Mon Nov 14 13:16:51 CST 2022 time_line jobs+10230251+startPipeline_pairwise149of210 906.14758 2160.58 61.63 2:03.36 1801% 1775252 Mon Nov 14 13:36:31 CST 2022 time_line jobs+10230251+startPipeline_pairwise150of210 912.15363 2314.33 63.55 2:12.12 1799% 1791888 Mon Nov 14 13:46:13 CST 2022 time_line jobs+10230251+startPipeline_pairwise151of210 893.81046 2189.88 59.75 1:51.97 2009% 1780500 Mon Nov 14 13:36:19 CST 2022 time_line jobs+10230251+startPipeline_pairwise152of210 907.86466 2288.56 63.82 2:09.33 1818% 1789324 Mon Nov 14 13:36:33 CST 2022 time_line jobs+10230251+startPipeline_pairwise153of210 905.98327 2109.71 63.80 1:53.94 1907% 1792640 Mon Nov 14 13:39:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise154of210 927.18422 2161.26 46.54 1:35.68 2307% 1783096 Mon Nov 14 13:36:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise155of210 877.18845 1915.33 48.04 1:25.09 2307% 1786924 Mon Nov 14 13:36:02 CST 2022 time_line jobs+10230251+startPipeline_pairwise156of210 883.37241 1654.93 41.62 1:28.15 1924% 1528136 Mon Nov 14 13:16:41 CST 2022 time_line jobs+10230251+startPipeline_pairwise157of210 892.98006 1983.10 68.85 1:33.97 2183% 1790288 Mon Nov 14 13:23:14 CST 2022 time_line jobs+10230251+startPipeline_pairwise158of210 924.26009 2181.42 67.38 1:57.79 1909% 1776748 Mon Nov 14 13:36:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise159of210 945.87030 2572.44 60.22 2:04.71 2110% 1776136 Mon Nov 14 13:37:10 CST 2022 time_line jobs+10230251+startPipeline_pairwise160of210 921.88663 2070.18 50.44 1:25.82 2470% 1790420 Mon Nov 14 13:36:46 CST 2022 time_line jobs+10230251+startPipeline_pairwise161of210 953.82280 2358.09 60.91 1:57.31 2062% 1778680 Mon Nov 14 13:37:19 CST 2022 time_line jobs+10230251+startPipeline_pairwise162of210 987.39300 3077.12 65.13 2:31.28 2076% 1790752 Mon Nov 14 13:37:53 CST 2022 time_line jobs+10230251+startPipeline_pairwise163of210 990.83712 3006.06 65.12 2:31.33 2029% 1791020 Mon Nov 14 13:37:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise164of210 946.22323 2019.66 64.83 1:45.46 1976% 1784220 Mon Nov 14 13:24:08 CST 2022 time_line jobs+10230251+startPipeline_pairwise165of210 995.01492 3102.71 65.71 2:27.56 2147% 1792448 Mon Nov 14 13:38:00 CST 2022 time_line jobs+10230251+startPipeline_pairwise166of210 964.55278 2356.74 44.97 1:53.62 2113% 1526516 Mon Nov 14 13:37:30 CST 2022 time_line jobs+10230251+startPipeline_pairwise167of210 975.31893 2168.18 58.65 2:02.29 1820% 1778368 Mon Nov 14 13:37:40 CST 2022 time_line jobs+10230251+startPipeline_pairwise168of210 983.63112 2126.40 59.63 1:48.72 2010% 1773416 Mon Nov 14 13:41:13 CST 2022 time_line jobs+10230251+startPipeline_pairwise169of210 965.46609 1902.17 48.84 1:25.87 2271% 1790308 Mon Nov 14 13:37:30 CST 2022 time_line jobs+10230251+startPipeline_pairwise170of210 1007.74399 2366.28 60.93 2:02.46 1981% 1781548 Mon Nov 14 13:47:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise171of210 1009.99341 2318.58 62.59 2:03.69 1925% 1792260 Mon Nov 14 13:18:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise172of210 997.70118 2200.57 62.95 1:50.70 2044% 1791456 Mon Nov 14 13:38:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise173of210 1015.02412 2304.68 58.51 2:00.01 1969% 1782568 Mon Nov 14 13:18:53 CST 2022 time_line jobs+10230251+startPipeline_pairwise174of210 974.10558 1924.78 56.05 1:19.63 2487% 1787604 Mon Nov 14 13:24:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise175of210 966.17772 1575.49 43.88 1:08.68 2357% 1513892 Mon Nov 14 13:37:32 CST 2022 time_line jobs+10230251+startPipeline_pairwise176of210 1017.31453 2040.35 64.86 1:49.16 1928% 1775904 Mon Nov 14 13:41:47 CST 2022 time_line jobs+10230251+startPipeline_pairwise177of210 1012.32632 2168.67 58.62 1:44.38 2133% 1788020 Mon Nov 14 13:38:19 CST 2022 time_line jobs+10230251+startPipeline_pairwise178of210 1024.98116 2369.51 59.25 1:54.45 2122% 1779432 Mon Nov 14 13:38:31 CST 2022 time_line jobs+10230251+startPipeline_pairwise179of210 1039.09417 2453.67 60.59 2:05.41 2004% 1787108 Mon Nov 14 13:48:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise180of210 1005.00662 1846.74 48.35 1:20.87 2343% 1789652 Mon Nov 14 13:38:10 CST 2022 time_line jobs+10230251+startPipeline_pairwise181of210 1041.99009 2166.26 64.95 1:55.75 1927% 1781380 Mon Nov 14 13:38:48 CST 2022 time_line jobs+10230251+startPipeline_pairwise182of210 975.68646 1758.05 44.17 0:47.11 3825% 1789020 Mon Nov 14 13:37:41 CST 2022 time_line jobs+10230251+startPipeline_pairwise183of210 1038.67506 1772.87 42.04 1:31.37 1986% 1509428 Mon Nov 14 13:38:45 CST 2022 time_line jobs+10230251+startPipeline_pairwise184of210 1041.62660 1864.56 65.05 1:33.41 2065% 1790020 Mon Nov 14 13:25:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise185of210 1063.85988 2139.66 59.90 1:47.06 2054% 1778068 Mon Nov 14 13:39:10 CST 2022 time_line jobs+10230251+startPipeline_pairwise186of210 1096.29393 2625.00 63.80 2:09.33 2079% 1789560 Mon Nov 14 13:39:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise187of210 1053.13613 1928.08 44.04 1:25.67 2301% 1789808 Mon Nov 14 13:38:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise188of210 1087.54426 2073.09 60.90 1:58.72 1797% 1779736 Mon Nov 14 13:39:34 CST 2022 time_line jobs+10230251+startPipeline_pairwise189of210 1074.43977 1837.06 57.30 1:38.04 1932% 1787900 Mon Nov 14 13:26:17 CST 2022 time_line jobs+10230251+startPipeline_pairwise190of210 1065.43389 1628.12 43.32 1:28.30 1892% 1527372 Mon Nov 14 13:39:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise191of210 1026.16881 1882.59 45.36 0:48.59 3967% 1779728 Mon Nov 14 13:38:33 CST 2022 time_line jobs+10230251+startPipeline_pairwise192of210 1098.70465 2233.79 58.48 1:51.99 2046% 1789376 Mon Nov 14 13:43:09 CST 2022 time_line jobs+10230251+startPipeline_pairwise193of210 1140.32460 3005.78 65.65 2:30.47 2041% 1790204 Mon Nov 14 13:40:27 CST 2022 time_line jobs+10230251+startPipeline_pairwise194of210 1143.33704 3095.33 64.76 2:30.20 2103% 1783144 Mon Nov 14 13:40:30 CST 2022 time_line jobs+10230251+startPipeline_pairwise195of210 1124.00508 2784.23 58.99 2:05.71 2261% 1788756 Mon Nov 14 13:40:09 CST 2022 time_line jobs+10230251+startPipeline_pairwise196of210 1079.30463 1592.13 45.17 1:20.07 2044% 1517820 Mon Nov 14 13:39:26 CST 2022 time_line jobs+10230251+startPipeline_pairwise197of210 1096.51298 2030.77 49.58 1:27.26 2383% 1790588 Mon Nov 14 13:39:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise198of210 1137.52644 2442.02 65.90 2:08.52 1951% 1792284 Mon Nov 14 13:50:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise199of210 1125.37011 2366.31 58.16 1:53.65 2133% 1784060 Mon Nov 14 13:20:45 CST 2022 time_line jobs+10230251+startPipeline_pairwise200of210 1116.29573 2207.96 57.61 1:42.54 2209% 1788488 Mon Nov 14 13:40:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise201of210 1116.26890 1782.03 42.04 1:38.72 1847% 1526340 Mon Nov 14 13:20:35 CST 2022 time_line jobs+10230251+startPipeline_pairwise202of210 1125.64013 2136.15 57.54 1:46.80 2053% 1790556 Mon Nov 14 13:43:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise203of210 1150.23165 2299.15 59.58 2:03.64 1907% 1784128 Mon Nov 14 13:40:37 CST 2022 time_line jobs+10230251+startPipeline_pairwise204of210 1074.61420 1769.83 43.83 0:46.83 3872% 1791316 Mon Nov 14 13:39:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise205of210 1137.33064 1692.39 43.93 1:36.12 1806% 1525016 Mon Nov 14 13:50:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise206of210 1158.17929 2209.47 56.91 1:57.43 1929% 1783120 Mon Nov 14 13:40:45 CST 2022 time_line jobs+10230251+startPipeline_pairwise207of210 1121.76329 2166.76 51.66 1:18.48 2826% 1789136 Mon Nov 14 13:40:09 CST 2022 time_line jobs+10230251+startPipeline_pairwise208of210 1096.99874 1426.36 35.76 0:53.78 2718% 1518108 Mon Nov 14 13:26:40 CST 2022 time_line jobs+10230251+startPipeline_pairwise209of210 1127.18784 1863.03 44.30 1:12.53 2629% 1788660 Mon Nov 14 13:40:14 CST 2022 time_line jobs+10230251+startPipeline_pairwise210of210 1107.20258 1627.79 34.92 0:42.70 3893% 1522932 Mon Nov 14 13:39:55 CST 2022 2022-11-14 19:27:43,394:INFO:************************* Executing stage 3: Assembly ************************* 2022-11-14 19:27:43,395:INFO:Generating jobs for Assembly 2022-11-14 19:27:43,395:INFO:Assembly ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/Assembler${BINARY_SUFFIX:=} -if /home/bionano/access/local/jobs/10230251/output/all.list -af /home/bionano/access/local/jobs/10230251/output/align/alignOut -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt -usecolor 1 -FP 2.0 -FN 0.10 -sf 0.12 -sd 0.0 -sr 0.03 -res 3.1 -resSD 0.75 -usecolor 1 -S 0. -contigs_format 1 -MaxRelCoverage 100 200 30 -BulgeCoverage 20 -MaxCoverage 10 -MinCov 10 -MinAvCov 5 -MinMaps 5 -MinContigLen 0.0 -EndTrim 0.9 -refine 0 -mres 0.9 -outlier 0.001 -outlierMax 40. -endoutlier 0 -PVchim 0.001 3 -FastBulge 1000 -FastPaths 1 -draftsize 1 -alignscore -FragilePreserve 0 -SideBranch 1 -SideChain -MinCov 8 -MaxCoverage 8 -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -AlignmentFilter 100 5.0 1.0 0.6 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -T 1e-11 -minlen 180.0 -maxContigSiteDensity 0 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/exp_unrefined -maxthreads 112 -stdout -stderr 2022-11-14 19:27:43,396:INFO: Starting Multi-Threaded Process: Assembly 2022-11-14 19:27:43,396:INFO:conda_env=None,conda_source=None 2022-11-14 19:27:43,396:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:27:43,459:INFO: START 1: Assembly, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 19:43:50,005:INFO: STOP 1: Assembly, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 16.11m RunTime= 0h 16.10m CPUload=1477% saphyr1a 2022-11-14 19:43:50,007:INFO: Finished Multi-Threaded Process: Assembly 2022-11-14 19:43:50,137:INFO: Assembly completed in: 966.5s Result Found Completed 1 jobs on 56 threads Clock time: 0h 16.11m CPU time : 0h 16.11m Begin machine parsable segment for: Assembly time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Assembly 966.54623 12246.85 2018.37 16:05.65 1477% 21151912 Mon Nov 14 13:43:49 CST 2022 2022-11-14 19:43:50,138:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 19:43:50,139:INFO:Loaded 1828 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 19:43:50,155:INFO:Found 1825 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 19:43:50,155:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 19:43:50,156:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 19:43:50,157:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_unrefined 2022-11-14 19:43:50,157:INFO:conda_env=None,conda_source=None 2022-11-14 19:43:50,157:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 19:43:50,183:INFO: START 1: mrg_exp_unrefin, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 19:43:58,131:INFO: STOP 1: mrg_exp_unrefin, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.13m RunTime= 0h 0.08m CPUload=131% bionano1d 2022-11-14 19:43:58,131:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_unrefined 2022-11-14 19:43:58,132:INFO: mrg_exp_unrefined_0 completed in: 7.9s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.13m CPU time : 0h 0.13m Begin machine parsable segment for: Cmap_Merge_exp_unrefined time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_unrefined_0 7.94724 1.70 4.44 0:04.66 131% 154276 Mon Nov 14 13:56:59 CST 2022 2022-11-14 19:43:59,625:INFO:Generating jobs for CharacterizeD_Assembly 2022-11-14 19:43:59,625:INFO:CharacterizeD_Assembly ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/EXP_UNREFINED.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/alignref/EXP_UNREFINED -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 19:43:59,627:INFO:Running jobs for CharacterizeD_Assembly 2022-11-14 19:43:59,629:INFO: Starting Multi-Threaded Process: CharacterizeD_Assembly 2022-11-14 19:43:59,630:INFO:conda_env=None,conda_source=None 2022-11-14 19:43:59,630:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:43:59,634:INFO:Deleting binary pairwise alignment files due to clean-up level 1 2022-11-14 19:43:59,725:INFO: START 1: CharD_Assembly, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 19:44:04,766:INFO:************************* Executing stage 4: refineA ************************* 2022-11-14 19:44:04,766:INFO:Starting stage refineA 2022-11-14 19:44:04,767:INFO:refineA maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 19:44:04,767:INFO:Generating Jobs for refineA, conf.extensionCount= 0 2022-11-14 19:44:04,768:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 19:44:04,769:INFO:Loaded 1832 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 19:44:04,782:INFO:Found 1825 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 19:44:04,783:INFO:Calling contigComputeWeights with ExtensionNoES= False 2022-11-14 19:44:04,872:INFO:MaxWeight = 960.00, witr= 0, threads= 56 (totThreads=56, minthreads=14, maxthreads=56), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA/exp_refineA_group_weights 2022-11-14 19:44:05,083:INFO:NumHostJobs= 3, TotalJobs= 52, HostWeight= 1212.6208000000001, TargetWeight= 1104.2670794799653, TotalWeight= 13803.338493499567 2022-11-14 19:44:05,084:INFO:Found 52 groups for refineA 2022-11-14 19:44:05,086:INFO:refineA ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/Assembler${BINARY_SUFFIX:=} -if /home/bionano/access/local/jobs/10230251/output/all.list -contigs /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/exp_unrefined.contigs 1 2 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA/exp_refineA -maxthreads 14 -f -stdout -stderr -T 1e-11 -minlen 180.0 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -usecolor 1 -extend 1 -refine 2 -EndTrim 1.9 -LRbias 1e2 -deltaX 4 -deltaY 6 -MaxSE 0.5 -outlier 1e-2 -outlierMax 40. -endoutlier 0.001 -RTHETA_FIX 0 -maptype 0 -contigs_format 1 -PVres 2 -rres 0.9 -mres 0.9 -MinSplitLen 50.0 -alignscore -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -RefineRange 6 6 -RefineErr 1e-6 0 0 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -usecolor 1 -FP 2.0 -FN 0.10 -sf 0.12 -sd 0.0 -sr 0.03 -res 3.1 -resSD 0.75 -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 19:44:05,086:INFO: Starting Multi-Threaded Process: refineA 2022-11-14 19:44:05,087:INFO:conda_env=None,conda_source=None 2022-11-14 19:44:05,087:INFO: Running 52 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:44:05,090:INFO: START 1: refineA 1, 56 Thr, 1 R, 52 T, 0 F, 51 Q 2022-11-14 19:44:05,113:INFO: START 2: refineA 2, 56 Thr, 2 R, 52 T, 0 F, 50 Q 2022-11-14 19:44:05,136:INFO: START 3: refineA 3, 56 Thr, 3 R, 52 T, 0 F, 49 Q 2022-11-14 19:44:05,159:INFO: START 4: refineA 4, 14 Thr, 4 R, 52 T, 0 F, 48 Q 2022-11-14 19:44:05,183:INFO: START 5: refineA 5, 14 Thr, 5 R, 52 T, 0 F, 47 Q 2022-11-14 19:44:05,207:INFO: START 6: refineA 6, 14 Thr, 6 R, 52 T, 0 F, 46 Q 2022-11-14 19:44:05,230:INFO: START 7: refineA 7, 14 Thr, 7 R, 52 T, 0 F, 45 Q 2022-11-14 19:44:05,254:INFO: START 8: refineA 8, 14 Thr, 8 R, 52 T, 0 F, 44 Q 2022-11-14 19:44:05,277:INFO: START 9: refineA 9, 14 Thr, 9 R, 52 T, 0 F, 43 Q 2022-11-14 19:44:05,301:INFO: START 10: refineA 10, 14 Thr, 10 R, 52 T, 0 F, 42 Q 2022-11-14 19:44:05,325:INFO: START 11: refineA 11, 14 Thr, 11 R, 52 T, 0 F, 41 Q 2022-11-14 19:44:05,348:INFO: START 12: refineA 12, 14 Thr, 12 R, 52 T, 0 F, 40 Q 2022-11-14 19:44:05,371:INFO: START 13: refineA 13, 14 Thr, 13 R, 52 T, 0 F, 39 Q 2022-11-14 19:44:05,395:INFO: START 14: refineA 14, 14 Thr, 14 R, 52 T, 0 F, 38 Q 2022-11-14 19:44:05,418:INFO: START 15: refineA 15, 14 Thr, 15 R, 52 T, 0 F, 37 Q 2022-11-14 19:44:05,442:INFO: START 16: refineA 16, 14 Thr, 16 R, 52 T, 0 F, 36 Q 2022-11-14 19:44:05,466:INFO: START 17: refineA 17, 14 Thr, 17 R, 52 T, 0 F, 35 Q 2022-11-14 19:44:05,489:INFO: START 18: refineA 18, 14 Thr, 18 R, 52 T, 0 F, 34 Q 2022-11-14 19:44:05,513:INFO: START 19: refineA 19, 14 Thr, 19 R, 52 T, 0 F, 33 Q 2022-11-14 19:44:05,537:INFO: START 20: refineA 20, 14 Thr, 20 R, 52 T, 0 F, 32 Q 2022-11-14 19:44:05,562:INFO: START 21: refineA 21, 14 Thr, 21 R, 52 T, 0 F, 31 Q 2022-11-14 19:44:05,586:INFO: START 22: refineA 22, 14 Thr, 22 R, 52 T, 0 F, 30 Q 2022-11-14 19:44:05,610:INFO: START 23: refineA 23, 14 Thr, 23 R, 52 T, 0 F, 29 Q 2022-11-14 19:44:05,633:INFO: START 24: refineA 24, 14 Thr, 24 R, 52 T, 0 F, 28 Q 2022-11-14 19:44:05,726:INFO: START 25: refineA 25, 14 Thr, 25 R, 52 T, 0 F, 27 Q 2022-11-14 19:44:05,750:INFO: START 26: refineA 26, 14 Thr, 26 R, 52 T, 0 F, 26 Q 2022-11-14 19:44:05,774:INFO: START 27: refineA 27, 14 Thr, 27 R, 52 T, 0 F, 25 Q 2022-11-14 19:44:05,798:INFO: START 28: refineA 28, 14 Thr, 28 R, 52 T, 0 F, 24 Q 2022-11-14 19:44:05,821:INFO: START 29: refineA 29, 14 Thr, 29 R, 52 T, 0 F, 23 Q 2022-11-14 19:44:05,845:INFO: START 30: refineA 30, 14 Thr, 30 R, 52 T, 0 F, 22 Q 2022-11-14 19:44:05,869:INFO: START 31: refineA 31, 14 Thr, 31 R, 52 T, 0 F, 21 Q 2022-11-14 19:44:05,893:INFO: START 32: refineA 32, 14 Thr, 32 R, 52 T, 0 F, 20 Q 2022-11-14 19:44:05,917:INFO: START 33: refineA 33, 14 Thr, 33 R, 52 T, 0 F, 19 Q 2022-11-14 19:44:05,940:INFO: START 34: refineA 34, 14 Thr, 34 R, 52 T, 0 F, 18 Q 2022-11-14 19:44:05,963:INFO: START 35: refineA 35, 14 Thr, 35 R, 52 T, 0 F, 17 Q 2022-11-14 19:44:05,985:INFO: START 36: refineA 36, 14 Thr, 36 R, 52 T, 0 F, 16 Q 2022-11-14 19:44:06,032:INFO: START 37: refineA 37, 14 Thr, 37 R, 52 T, 0 F, 15 Q 2022-11-14 19:44:06,056:INFO: START 38: refineA 38, 14 Thr, 38 R, 52 T, 0 F, 14 Q 2022-11-14 19:44:06,079:INFO: START 39: refineA 39, 14 Thr, 39 R, 52 T, 0 F, 13 Q 2022-11-14 19:44:06,104:INFO: START 40: refineA 40, 14 Thr, 40 R, 52 T, 0 F, 12 Q 2022-11-14 19:44:06,128:INFO: START 41: refineA 41, 14 Thr, 41 R, 52 T, 0 F, 11 Q 2022-11-14 19:44:06,152:INFO: START 42: refineA 42, 14 Thr, 42 R, 52 T, 0 F, 10 Q 2022-11-14 19:44:06,176:INFO: START 43: refineA 43, 14 Thr, 43 R, 52 T, 0 F, 9 Q 2022-11-14 19:44:06,200:INFO: START 44: refineA 44, 14 Thr, 44 R, 52 T, 0 F, 8 Q 2022-11-14 19:44:06,223:INFO: START 45: refineA 45, 14 Thr, 45 R, 52 T, 0 F, 7 Q 2022-11-14 19:44:06,247:INFO: START 46: refineA 46, 14 Thr, 46 R, 52 T, 0 F, 6 Q 2022-11-14 19:44:06,271:INFO: START 47: refineA 47, 14 Thr, 47 R, 52 T, 0 F, 5 Q 2022-11-14 19:44:06,294:INFO: START 48: refineA 48, 14 Thr, 48 R, 52 T, 0 F, 4 Q 2022-11-14 19:44:06,318:INFO: START 49: refineA 49, 14 Thr, 49 R, 52 T, 0 F, 3 Q 2022-11-14 19:44:06,343:INFO: START 50: refineA 50, 14 Thr, 50 R, 52 T, 0 F, 2 Q 2022-11-14 19:44:06,367:INFO: START 51: refineA 51, 14 Thr, 51 R, 52 T, 0 F, 1 Q 2022-11-14 19:44:06,391:INFO: START 52: refineA 52, 14 Thr, 52 R, 52 T, 0 F, 0 Q 2022-11-14 19:44:07,052:INFO: STOP 1: CharD_Assembly, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.12m RunTime= 0h 0.11m CPUload=1632% saphyr1a 2022-11-14 19:44:07,052:INFO: Finished Multi-Threaded Process: CharacterizeD_Assembly 2022-11-14 19:44:07,052:INFO:Characterize Assembly completed : will check Results 2022-11-14 19:44:07,053:INFO: CharD_Assembly completed in: 7.3s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.12m CPU time : 0h 0.12m Begin machine parsable segment for: CharacterizeD_Assembly time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Assembly 7.32608 99.51 9.26 0:06.66 1632% 1243792 Mon Nov 14 13:44:06 CST 2022 2022-11-14 19:44:08,736:INFO:Stage Summary: CharacterizeD_Assembly Number Genome Maps: 1825 Total Genome Map Length (Mbp): 2106.349 Mean Genome Map Length (Mbp): 1.154 Median Genome Map Length (Mbp): 0.426 Genome Map N50 (Mbp): 18.174 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 3.117 Total number of aligned Genome Maps : 2 (0.00) Total Aligned Length (Mbp) : 0.199 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.199 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 19:44:08,736:INFO:Characterize Assembly results check completed 2022-11-14 19:44:33,993:INFO: STOP 52: refineA 52, 14 Thr, 51 R, 52 T, 1 F, 0 Q TotalTime= 0h 0.46m RunTime= 0h 0.33m CPUload=135% bionano2d 2022-11-14 19:44:44,689:INFO: STOP 43: refineA 43, 14 Thr, 50 R, 52 T, 2 F, 0 Q TotalTime= 0h 0.64m RunTime= 0h 0.52m CPUload=217% bionano2d 2022-11-14 19:44:48,063:INFO: STOP 34: refineA 34, 14 Thr, 49 R, 52 T, 3 F, 0 Q TotalTime= 0h 0.70m RunTime= 0h 0.66m CPUload=213% bionano2d 2022-11-14 19:44:48,473:INFO: STOP 47: refineA 47, 14 Thr, 48 R, 52 T, 4 F, 0 Q TotalTime= 0h 0.70m RunTime= 0h 0.59m CPUload=164% bionano1b 2022-11-14 19:44:52,875:INFO: STOP 25: refineA 25, 14 Thr, 47 R, 52 T, 5 F, 0 Q TotalTime= 0h 0.79m RunTime= 0h 0.74m CPUload=245% bionano2d 2022-11-14 19:44:53,260:INFO: STOP 38: refineA 38, 14 Thr, 46 R, 52 T, 6 F, 0 Q TotalTime= 0h 0.79m RunTime= 0h 0.67m CPUload=186% bionano1b 2022-11-14 19:44:54,347:INFO: STOP 29: refineA 29, 14 Thr, 45 R, 52 T, 7 F, 0 Q TotalTime= 0h 0.81m RunTime= 0h 0.78m CPUload=187% bionano1b 2022-11-14 19:45:05,949:INFO: STOP 51: refineA 51, 14 Thr, 44 R, 52 T, 8 F, 0 Q TotalTime= 0h 0.99m RunTime= 0h 0.69m CPUload=87% saphyr1c 2022-11-14 19:45:08,137:INFO: STOP 20: refineA 20, 14 Thr, 43 R, 52 T, 9 F, 0 Q TotalTime= 0h 1.04m RunTime= 0h 1.01m CPUload=489% bionano1b 2022-11-14 19:45:11,627:INFO: STOP 50: refineA 50, 14 Thr, 42 R, 52 T, 10 F, 0 Q TotalTime= 0h 1.09m RunTime= 0h 0.78m CPUload=103% bionano1d 2022-11-14 19:45:14,404:INFO: STOP 48: refineA 48, 14 Thr, 41 R, 52 T, 11 F, 0 Q TotalTime= 0h 1.14m RunTime= 0h 0.81m CPUload=123% bionano2b 2022-11-14 19:45:15,339:INFO: STOP 42: refineA 42, 14 Thr, 40 R, 52 T, 12 F, 0 Q TotalTime= 0h 1.15m RunTime= 0h 0.85m CPUload=146% saphyr1c 2022-11-14 19:45:15,750:INFO: STOP 46: refineA 46, 14 Thr, 39 R, 52 T, 13 F, 0 Q TotalTime= 0h 1.16m RunTime= 0h 0.85m CPUload=130% saphyr1d 2022-11-14 19:45:15,764:INFO: STOP 44: refineA 44, 14 Thr, 38 R, 52 T, 14 F, 0 Q TotalTime= 0h 1.16m RunTime= 0h 0.80m CPUload=139% saphyr1b 2022-11-14 19:45:15,768:INFO: STOP 41: refineA 41, 14 Thr, 37 R, 52 T, 15 F, 0 Q TotalTime= 0h 1.16m RunTime= 0h 0.85m CPUload=141% bionano1d 2022-11-14 19:45:15,838:INFO: STOP 32: refineA 32, 14 Thr, 36 R, 52 T, 16 F, 0 Q TotalTime= 0h 1.17m RunTime= 0h 1.00m CPUload=141% bionano1d 2022-11-14 19:45:16,950:INFO: STOP 45: refineA 45, 14 Thr, 35 R, 52 T, 17 F, 0 Q TotalTime= 0h 1.18m RunTime= 0h 0.82m CPUload=136% bionano2c 2022-11-14 19:45:17,024:INFO: STOP 33: refineA 33, 14 Thr, 34 R, 52 T, 18 F, 0 Q TotalTime= 0h 1.19m RunTime= 0h 1.11m CPUload=135% saphyr1c 2022-11-14 19:45:17,358:INFO: STOP 39: refineA 39, 14 Thr, 33 R, 52 T, 19 F, 0 Q TotalTime= 0h 1.19m RunTime= 0h 0.87m CPUload=150% bionano2b 2022-11-14 19:45:17,703:INFO: STOP 49: refineA 49, 14 Thr, 32 R, 52 T, 20 F, 0 Q TotalTime= 0h 1.19m RunTime= 0h 0.78m CPUload=116% bionano1c 2022-11-14 19:45:17,718:INFO: STOP 37: refineA 37, 14 Thr, 31 R, 52 T, 21 F, 0 Q TotalTime= 0h 1.19m RunTime= 0h 0.91m CPUload=154% saphyr1d 2022-11-14 19:45:19,458:INFO: STOP 30: refineA 30, 14 Thr, 30 R, 52 T, 22 F, 0 Q TotalTime= 0h 1.23m RunTime= 0h 1.19m CPUload=126% bionano2b 2022-11-14 19:45:20,089:INFO: STOP 36: refineA 36, 14 Thr, 29 R, 52 T, 23 F, 0 Q TotalTime= 0h 1.24m RunTime= 0h 1.05m CPUload=132% bionano2c 2022-11-14 19:45:20,730:INFO: STOP 35: refineA 35, 14 Thr, 28 R, 52 T, 24 F, 0 Q TotalTime= 0h 1.25m RunTime= 0h 0.98m CPUload=148% saphyr1b 2022-11-14 19:45:22,568:INFO: STOP 40: refineA 40, 14 Thr, 27 R, 52 T, 25 F, 0 Q TotalTime= 0h 1.27m RunTime= 0h 0.90m CPUload=144% bionano1c 2022-11-14 19:45:22,880:INFO: STOP 28: refineA 28, 14 Thr, 26 R, 52 T, 26 F, 0 Q TotalTime= 0h 1.28m RunTime= 0h 1.24m CPUload=140% saphyr1d 2022-11-14 19:45:23,191:INFO: STOP 24: refineA 24, 14 Thr, 25 R, 52 T, 27 F, 0 Q TotalTime= 0h 1.29m RunTime= 0h 1.24m CPUload=154% saphyr1c 2022-11-14 19:45:23,997:INFO: STOP 27: refineA 27, 14 Thr, 24 R, 52 T, 28 F, 0 Q TotalTime= 0h 1.30m RunTime= 0h 1.12m CPUload=148% bionano2c 2022-11-14 19:45:24,781:INFO: STOP 31: refineA 31, 14 Thr, 23 R, 52 T, 29 F, 0 Q TotalTime= 0h 1.32m RunTime= 0h 1.12m CPUload=136% bionano1c 2022-11-14 19:45:24,785:INFO: STOP 26: refineA 26, 14 Thr, 22 R, 52 T, 30 F, 0 Q TotalTime= 0h 1.32m RunTime= 0h 1.14m CPUload=152% saphyr1b 2022-11-14 19:45:28,873:INFO: STOP 23: refineA 23, 14 Thr, 21 R, 52 T, 31 F, 0 Q TotalTime= 0h 1.39m RunTime= 0h 1.30m CPUload=167% bionano1d 2022-11-14 19:45:38,638:INFO: STOP 22: refineA 22, 14 Thr, 20 R, 52 T, 32 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.38m CPUload=178% bionano1c 2022-11-14 19:45:42,407:INFO: STOP 21: refineA 21, 14 Thr, 19 R, 52 T, 33 F, 0 Q TotalTime= 0h 1.61m RunTime= 0h 1.58m CPUload=210% bionano2b 2022-11-14 19:46:32,014:INFO: STOP 16: refineA 16, 14 Thr, 18 R, 52 T, 34 F, 0 Q TotalTime= 0h 2.44m RunTime= 0h 2.40m CPUload=1136% bionano2d 2022-11-14 19:46:41,331:INFO: STOP 19: refineA 19, 14 Thr, 17 R, 52 T, 35 F, 0 Q TotalTime= 0h 2.60m RunTime= 0h 2.54m CPUload=503% saphyr1d 2022-11-14 19:47:09,389:INFO: STOP 18: refineA 18, 14 Thr, 16 R, 52 T, 36 F, 0 Q TotalTime= 0h 3.06m RunTime= 0h 2.87m CPUload=545% bionano2c 2022-11-14 19:47:21,048:INFO: STOP 17: refineA 17, 14 Thr, 15 R, 52 T, 37 F, 0 Q TotalTime= 0h 3.26m RunTime= 0h 3.08m CPUload=680% saphyr1b 2022-11-14 19:48:43,290:INFO: STOP 15: refineA 15, 14 Thr, 14 R, 52 T, 38 F, 0 Q TotalTime= 0h 4.63m RunTime= 0h 4.58m CPUload=964% saphyr1c 2022-11-14 19:49:16,707:INFO: STOP 2: refineA 2, 56 Thr, 13 R, 52 T, 39 F, 0 Q TotalTime= 0h 5.19m RunTime= 0h 5.17m CPUload=4704% bionano1a 2022-11-14 19:49:52,489:INFO: STOP 10: refineA 10, 14 Thr, 12 R, 52 T, 40 F, 0 Q TotalTime= 0h 5.79m RunTime= 0h 5.72m CPUload=1195% saphyr1d 2022-11-14 19:49:54,432:INFO: STOP 14: refineA 14, 14 Thr, 11 R, 52 T, 41 F, 0 Q TotalTime= 0h 5.82m RunTime= 0h 5.75m CPUload=1098% bionano1d 2022-11-14 19:50:26,523:INFO: STOP 11: refineA 11, 14 Thr, 10 R, 52 T, 42 F, 0 Q TotalTime= 0h 6.35m RunTime= 0h 6.31m CPUload=1330% bionano1b 2022-11-14 19:50:36,242:INFO: STOP 13: refineA 13, 14 Thr, 9 R, 52 T, 43 F, 0 Q TotalTime= 0h 6.51m RunTime= 0h 6.33m CPUload=1136% bionano1c 2022-11-14 19:51:10,364:INFO: STOP 8: refineA 8, 14 Thr, 8 R, 52 T, 44 F, 0 Q TotalTime= 0h 7.09m RunTime= 0h 6.90m CPUload=1208% saphyr1b 2022-11-14 19:51:10,697:INFO: STOP 12: refineA 12, 14 Thr, 7 R, 52 T, 45 F, 0 Q TotalTime= 0h 7.09m RunTime= 0h 7.03m CPUload=1153% bionano2b 2022-11-14 19:51:40,481:INFO: STOP 7: refineA 7, 14 Thr, 6 R, 52 T, 46 F, 0 Q TotalTime= 0h 7.59m RunTime= 0h 7.55m CPUload=1325% bionano2d 2022-11-14 19:52:03,878:INFO: STOP 3: refineA 3, 56 Thr, 5 R, 52 T, 47 F, 0 Q TotalTime= 0h 7.98m RunTime= 0h 7.96m CPUload=2542% bionano2a 2022-11-14 19:53:35,554:INFO: STOP 9: refineA 9, 14 Thr, 4 R, 52 T, 48 F, 0 Q TotalTime= 0h 9.50m RunTime= 0h 9.34m CPUload=1212% bionano2c 2022-11-14 19:53:37,725:INFO: STOP 6: refineA 6, 14 Thr, 3 R, 52 T, 49 F, 0 Q TotalTime= 0h 9.54m RunTime= 0h 9.49m CPUload=1268% saphyr1c 2022-11-14 19:53:41,099:INFO: STOP 1: refineA 1, 56 Thr, 2 R, 52 T, 50 F, 0 Q TotalTime= 0h 9.60m RunTime= 0h 9.56m CPUload=3141% bionano2a 2022-11-14 19:54:41,198:INFO: STOP 5: refineA 5, 14 Thr, 1 R, 52 T, 51 F, 0 Q TotalTime= 0h 10.60m RunTime= 0h 10.54m CPUload=1269% bionano1d 2022-11-14 19:56:02,130:INFO: STOP 4: refineA 4, 14 Thr, 0 R, 52 T, 52 F, 0 Q TotalTime= 0h 11.95m RunTime= 0h 11.77m CPUload=1228% bionano1c 2022-11-14 19:56:02,131:INFO: Finished Multi-Threaded Process: refineA 2022-11-14 19:56:02,228:INFO: refineA 1 completed in: 576.0s Result Found refineA 2 completed in: 311.6s Result Found refineA 3 completed in: 478.7s Result Found refineA 4 completed in: 717.0s Result Found refineA 5 completed in: 636.0s Result Found refineA 6 completed in: 572.5s Result Found refineA 7 completed in: 455.3s Result Found refineA 8 completed in: 425.1s Result Found refineA 9 completed in: 570.3s Result Found refineA 10 completed in: 347.2s Result Found refineA 11 completed in: 381.2s Result Found refineA 12 completed in: 425.3s Result Found refineA 13 completed in: 390.9s Result Found refineA 14 completed in: 349.0s Result Found refineA 15 completed in: 277.9s Result Found refineA 16 completed in: 146.6s Result Found refineA 17 completed in: 195.6s Result Found refineA 18 completed in: 183.9s Result Found refineA 19 completed in: 155.8s Result Found refineA 20 completed in: 62.6s Result Found refineA 21 completed in: 96.8s Result Found refineA 22 completed in: 93.1s Result Found refineA 23 completed in: 83.3s Result Found refineA 24 completed in: 77.6s Result Found refineA 25 completed in: 47.1s Result Found refineA 26 completed in: 79.0s Result Found refineA 27 completed in: 78.2s Result Found refineA 28 completed in: 77.1s Result Found refineA 29 completed in: 48.5s Result Found refineA 30 completed in: 73.6s Result Found refineA 31 completed in: 78.9s Result Found refineA 32 completed in: 69.9s Result Found refineA 33 completed in: 71.1s Result Found refineA 34 completed in: 42.1s Result Found refineA 35 completed in: 74.8s Result Found refineA 36 completed in: 74.1s Result Found refineA 37 completed in: 71.7s Result Found refineA 38 completed in: 47.2s Result Found refineA 39 completed in: 71.3s Result Found refineA 40 completed in: 76.5s Result Found refineA 41 completed in: 69.6s Result Found refineA 42 completed in: 69.2s Result Found refineA 43 completed in: 38.5s Result Found refineA 44 completed in: 69.6s Result Found refineA 45 completed in: 70.7s Result Found refineA 46 completed in: 69.5s Result Found refineA 47 completed in: 42.2s Result Found refineA 48 completed in: 68.1s Result Found refineA 49 completed in: 71.4s Result Found refineA 50 completed in: 65.3s Result Found refineA 51 completed in: 59.6s Result Found refineA 52 completed in: 27.6s Result Found Completed 52 jobs on 56 threads Clock time: 0h 11.95m CPU time : 2h 43.53m Begin machine parsable segment for: refineA time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineA_contig1 576.00856 17947.64 77.70 9:33.82 3141% 1106204 Mon Nov 14 14:06:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig3 311.59324 14505.42 87.30 5:10.17 4704% 876836 Mon Nov 14 14:02:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig5 478.74142 12071.48 62.01 7:57.21 2542% 783296 Mon Nov 14 14:05:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig7 716.97028 8653.98 18.90 11:46.00 1228% 552336 Mon Nov 14 14:09:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig9 636.01434 8005.94 18.49 10:32.07 1269% 522040 Mon Nov 14 14:07:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig11 572.51721 7199.86 19.78 9:29.21 1268% 492968 Mon Nov 14 14:10:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig13 455.25060 5989.81 12.16 7:32.67 1325% 424252 Mon Nov 14 14:04:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig15 425.10961 4989.77 12.58 6:53.76 1208% 388796 Mon Nov 14 13:44:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig17 570.27622 6771.27 17.30 9:19.68 1212% 369300 Mon Nov 14 14:06:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig20 347.18691 4088.11 14.52 5:43.15 1195% 288540 Mon Nov 14 14:12:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig22 381.19816 5021.86 11.51 6:18.41 1330% 280876 Mon Nov 14 14:03:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig25 425.34892 4847.51 15.38 7:01.73 1153% 266784 Mon Nov 14 14:04:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig29 390.87037 4302.17 14.32 6:19.74 1136% 258692 Mon Nov 14 14:03:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig34 349.03677 3769.37 17.84 5:44.77 1098% 245264 Mon Nov 14 14:02:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig44 277.87187 2627.50 20.51 4:34.51 964% 233020 Mon Nov 14 14:05:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig63 146.57110 1618.24 17.22 2:23.95 1136% 221712 Mon Nov 14 13:59:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig95 195.58153 1231.98 24.58 3:04.54 680% 211940 Mon Nov 14 13:40:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig135 183.89864 913.72 26.34 2:52.47 545% 206360 Mon Nov 14 14:00:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig184 155.81771 737.94 27.70 2:32.07 503% 202616 Mon Nov 14 14:09:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig234 62.59966 282.21 13.72 1:00.42 489% 197724 Mon Nov 14 13:58:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig283 96.84532 183.58 15.52 1:34.49 210% 195868 Mon Nov 14 13:58:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig329 93.05222 135.82 11.12 1:22.27 178% 195664 Mon Nov 14 13:58:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig374 83.26338 119.67 10.30 1:17.44 167% 195452 Mon Nov 14 13:58:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig419 77.55783 104.96 9.30 1:13.83 154% 195308 Mon Nov 14 14:01:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig461 47.14843 102.73 6.07 0:44.35 245% 195260 Mon Nov 14 13:57:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig506 79.03486 95.15 8.73 1:08.01 152% 195444 Mon Nov 14 13:38:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig549 78.22305 91.42 8.37 1:07.28 148% 195524 Mon Nov 14 13:58:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig593 77.08189 95.76 8.79 1:14.49 140% 195504 Mon Nov 14 14:08:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig638 48.52594 82.00 5.19 0:46.38 187% 195572 Mon Nov 14 13:57:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig683 73.61307 81.64 8.61 1:11.17 126% 195516 Mon Nov 14 13:58:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig729 78.91181 83.65 7.87 1:06.94 136% 195324 Mon Nov 14 13:58:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig775 69.94468 77.44 7.48 0:59.88 141% 195348 Mon Nov 14 13:58:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig819 71.10749 81.65 8.10 1:06.19 135% 195400 Mon Nov 14 14:01:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig865 42.12291 79.28 4.96 0:39.38 213% 195352 Mon Nov 14 13:57:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig913 74.76664 79.24 7.45 0:58.28 148% 195620 Mon Nov 14 13:38:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig961 74.10289 76.04 7.36 1:02.77 132% 195256 Mon Nov 14 13:58:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1008 71.68601 76.23 7.58 0:54.22 154% 195552 Mon Nov 14 14:07:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1056 47.20416 70.18 4.38 0:40.01 186% 195488 Mon Nov 14 13:57:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1105 71.27889 70.53 7.57 0:51.86 150% 195300 Mon Nov 14 13:58:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1153 76.46436 70.44 7.28 0:53.71 144% 195348 Mon Nov 14 13:58:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1203 69.64002 65.72 6.43 0:50.92 141% 195316 Mon Nov 14 13:58:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1253 69.18695 66.79 7.25 0:50.56 146% 195320 Mon Nov 14 14:01:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1303 38.51325 63.56 4.22 0:31.17 217% 195272 Mon Nov 14 13:57:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1355 69.56450 59.47 6.89 0:47.60 139% 195372 Mon Nov 14 13:38:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1406 70.72670 60.11 6.95 0:49.30 136% 195088 Mon Nov 14 13:58:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1457 69.50199 58.63 7.40 0:50.52 130% 195416 Mon Nov 14 14:07:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1509 42.20192 54.19 3.92 0:35.31 164% 195116 Mon Nov 14 13:57:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1561 68.10964 52.58 7.31 0:48.35 123% 195164 Mon Nov 14 13:58:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1614 71.38468 47.67 6.90 0:46.94 116% 195472 Mon Nov 14 13:58:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1667 65.28449 41.82 6.24 0:46.40 103% 195264 Mon Nov 14 13:58:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1720 59.58089 30.14 6.06 0:41.26 87% 195080 Mon Nov 14 14:01:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1773 27.60239 23.54 3.19 0:19.80 135% 195084 Mon Nov 14 13:57:35 CST 2022 2022-11-14 19:56:02,228:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 19:56:02,232:INFO:Loaded 5581 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 19:56:02,252:INFO:Found 1825 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 19:56:02,253:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 19:56:02,254:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 19:56:02,255:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_refineA 2022-11-14 19:56:02,255:INFO:conda_env=None,conda_source=None 2022-11-14 19:56:02,255:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 19:56:02,293:INFO: START 1: mrg_exp_refineA, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 19:56:09,129:INFO: STOP 1: mrg_exp_refineA, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.11m RunTime= 0h 0.08m CPUload=130% saphyr1d 2022-11-14 19:56:09,129:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_refineA 2022-11-14 19:56:09,130:INFO: mrg_exp_refineA_0 completed in: 6.8s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.11m CPU time : 0h 0.11m Begin machine parsable segment for: Cmap_Merge_exp_refineA time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_refineA_0 6.83589 1.75 4.29 0:04.62 130% 154800 Mon Nov 14 14:18:48 CST 2022 2022-11-14 19:56:10,644:INFO:************************* Executing stage 5: refineB0 ************************* 2022-11-14 19:56:10,644:INFO:Starting stage refineB0 2022-11-14 19:56:10,644:INFO:refineB0 maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 19:56:10,645:INFO:Generating Jobs for refineB0, conf.extensionCount= 0 2022-11-14 19:56:10,645:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 19:56:10,647:INFO:Loaded 5584 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 19:56:10,661:INFO:Found 1825 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 19:56:10,661:INFO:Calling contigComputeWeights with ExtensionNoES= False 2022-11-14 19:56:10,741:INFO:MaxWeight = 90.00, witr= 0, threads= 56 (totThreads=56, minthreads=14, maxthreads=56), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_group_weights 2022-11-14 19:56:12,049:INFO:NumHostJobs= 5, TotalJobs= 438, HostWeight= 1382.117503529602, TargetWeight= 1219.5635173011221, TotalWeight= 15244.543966264026 2022-11-14 19:56:12,055:INFO:refineB0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_20.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA/EXP_REFINEA.cmap -T 1e-12 -usecolor 1 -A 5 -S 0 -L 130 -maptype 0 -extend 1 -MaxCov 80 -MaxCovWt 0 -contigsplit 0.20 0.25 /home/bionano/access/local/jobs/10230251/output/contigs/ID -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -splitFragile 20 2.0 0 -TrimNorm 0 30.0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -skip_dist 0.01 0.01 -endoutlierFinal 1 -RTHETA_FIX 0 -nosplit 2 -EndTrim 7.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtOutlier 0.0 -biaswtRefine 0.7 1 -PVres 2 -PVendoutlier -AlignRes 1.5 -rres 0.9 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -mres 0.9 -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 -BestRefWT 0 -AddFragsWT 0 -MultiMatches 0 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-4 1e-3 -outlierRef 1e-3 1e-2 -LRbias 1e0 -RefineRange 6 6 -RefineErr 1e-6 1e-6 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 6 -deltaYRef 6 -deltaExtXRef 8 -deltaExtYRef 8 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -TB 1e-6 1e-6 -TBmult 0 -FN_Refine 1.0 1.0 0.0 0.0 -cres 5.6 2 0.05 -cresCheckDel 1 -cresMaxLPdrop 4.0 -cresRefine -1 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 2.0 -FN 0.10 -sf 0.12 -sd 0.0 -sr 0.03 -res 3.1 -resSD 0.75 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 19:56:12,056:INFO: Starting Multi-Threaded Process: refineB0 2022-11-14 19:56:12,056:INFO:conda_env=None,conda_source=None 2022-11-14 19:56:12,056:INFO: Running 20 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:56:12,079:INFO: START 1: refineB0 1, 48 Thr, 1 R, 20 T, 0 F, 19 Q 2022-11-14 19:56:12,121:INFO: START 2: refineB0 2, 48 Thr, 2 R, 20 T, 0 F, 18 Q 2022-11-14 19:56:12,163:INFO: START 3: refineB0 3, 48 Thr, 3 R, 20 T, 0 F, 17 Q 2022-11-14 19:56:12,196:INFO: START 4: refineB0 4, 48 Thr, 4 R, 20 T, 0 F, 16 Q 2022-11-14 19:56:12,238:INFO: START 5: refineB0 5, 48 Thr, 5 R, 20 T, 0 F, 15 Q 2022-11-14 19:56:12,273:INFO: START 6: refineB0 6, 48 Thr, 6 R, 20 T, 0 F, 14 Q 2022-11-14 19:56:12,298:INFO: START 7: refineB0 7, 48 Thr, 7 R, 20 T, 0 F, 13 Q 2022-11-14 19:56:12,322:INFO: START 8: refineB0 8, 48 Thr, 8 R, 20 T, 0 F, 12 Q 2022-11-14 19:56:12,347:INFO: START 9: refineB0 9, 48 Thr, 9 R, 20 T, 0 F, 11 Q 2022-11-14 19:56:12,371:INFO: START 10: refineB0 10, 48 Thr, 10 R, 20 T, 0 F, 10 Q 2022-11-14 19:56:12,396:INFO: START 11: refineB0 11, 48 Thr, 11 R, 20 T, 0 F, 9 Q 2022-11-14 19:56:12,421:INFO: START 12: refineB0 12, 48 Thr, 12 R, 20 T, 0 F, 8 Q 2022-11-14 19:56:12,462:INFO: START 13: refineB0 13, 48 Thr, 13 R, 20 T, 0 F, 7 Q 2022-11-14 19:56:12,495:INFO: START 14: refineB0 14, 48 Thr, 14 R, 20 T, 0 F, 6 Q 2022-11-14 19:56:12,521:INFO: START 15: refineB0 15, 48 Thr, 15 R, 20 T, 0 F, 5 Q 2022-11-14 19:56:12,546:INFO: START 16: refineB0 16, 48 Thr, 16 R, 20 T, 0 F, 4 Q 2022-11-14 19:56:12,571:INFO: START 17: refineB0 17, 48 Thr, 17 R, 20 T, 0 F, 3 Q 2022-11-14 19:56:12,595:INFO: START 18: refineB0 18, 48 Thr, 18 R, 20 T, 0 F, 2 Q 2022-11-14 19:56:12,620:INFO: START 19: refineB0 19, 48 Thr, 19 R, 20 T, 0 F, 1 Q 2022-11-14 19:56:12,645:INFO: START 20: refineB0 20, 48 Thr, 20 R, 20 T, 0 F, 0 Q 2022-11-14 19:56:34,765:INFO: STOP 19: refineB0 19, 48 Thr, 19 R, 20 T, 1 F, 0 Q TotalTime= 0h 0.37m RunTime= 0h 0.34m CPUload=2708% bionano1a 2022-11-14 19:56:34,967:INFO: STOP 20: refineB0 20, 48 Thr, 18 R, 20 T, 2 F, 0 Q TotalTime= 0h 0.37m RunTime= 0h 0.34m CPUload=2755% bionano2a 2022-11-14 19:56:55,371:INFO: STOP 2: refineB0 2, 48 Thr, 17 R, 20 T, 3 F, 0 Q TotalTime= 0h 0.72m RunTime= 0h 0.68m CPUload=1719% bionano1b 2022-11-14 19:56:57,501:INFO: STOP 11: refineB0 11, 48 Thr, 16 R, 20 T, 4 F, 0 Q TotalTime= 0h 0.75m RunTime= 0h 0.70m CPUload=1645% bionano1b 2022-11-14 19:56:58,959:INFO: STOP 5: refineB0 5, 48 Thr, 15 R, 20 T, 5 F, 0 Q TotalTime= 0h 0.78m RunTime= 0h 0.73m CPUload=1593% bionano2d 2022-11-14 19:56:59,047:INFO: STOP 14: refineB0 14, 48 Thr, 14 R, 20 T, 6 F, 0 Q TotalTime= 0h 0.78m RunTime= 0h 0.73m CPUload=1583% bionano2d 2022-11-14 19:57:03,071:INFO: STOP 9: refineB0 9, 48 Thr, 13 R, 20 T, 7 F, 0 Q TotalTime= 0h 0.85m RunTime= 0h 0.76m CPUload=1547% bionano1c 2022-11-14 19:57:05,329:INFO: STOP 12: refineB0 12, 48 Thr, 12 R, 20 T, 8 F, 0 Q TotalTime= 0h 0.88m RunTime= 0h 0.77m CPUload=1539% bionano2b 2022-11-14 19:57:06,845:INFO: STOP 1: refineB0 1, 48 Thr, 11 R, 20 T, 9 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.88m CPUload=1397% saphyr1d 2022-11-14 19:57:06,935:INFO: STOP 6: refineB0 6, 48 Thr, 10 R, 20 T, 10 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.84m CPUload=1402% bionano2c 2022-11-14 19:57:06,937:INFO: STOP 4: refineB0 4, 48 Thr, 9 R, 20 T, 11 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.85m CPUload=1398% saphyr1b 2022-11-14 19:57:06,984:INFO: STOP 15: refineB0 15, 48 Thr, 8 R, 20 T, 12 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.84m CPUload=1391% bionano2c 2022-11-14 19:57:06,986:INFO: STOP 13: refineB0 13, 48 Thr, 7 R, 20 T, 13 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.85m CPUload=1379% saphyr1b 2022-11-14 19:57:07,494:INFO: STOP 18: refineB0 18, 48 Thr, 6 R, 20 T, 14 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.86m CPUload=1355% bionano1c 2022-11-14 19:57:07,617:INFO: STOP 3: refineB0 3, 48 Thr, 5 R, 20 T, 15 F, 0 Q TotalTime= 0h 0.92m RunTime= 0h 0.86m CPUload=1368% bionano2b 2022-11-14 19:57:08,026:INFO: STOP 10: refineB0 10, 48 Thr, 4 R, 20 T, 16 F, 0 Q TotalTime= 0h 0.93m RunTime= 0h 0.88m CPUload=1429% saphyr1d 2022-11-14 19:57:10,125:INFO: STOP 17: refineB0 17, 48 Thr, 3 R, 20 T, 17 F, 0 Q TotalTime= 0h 0.96m RunTime= 0h 0.90m CPUload=1310% bionano1d 2022-11-14 19:57:10,139:INFO: STOP 8: refineB0 8, 48 Thr, 2 R, 20 T, 18 F, 0 Q TotalTime= 0h 0.96m RunTime= 0h 0.89m CPUload=1293% bionano1d 2022-11-14 19:57:10,508:INFO: STOP 16: refineB0 16, 48 Thr, 1 R, 20 T, 19 F, 0 Q TotalTime= 0h 0.97m RunTime= 0h 0.91m CPUload=1280% saphyr1c 2022-11-14 19:57:10,510:INFO: STOP 7: refineB0 7, 48 Thr, 0 R, 20 T, 20 F, 0 Q TotalTime= 0h 0.97m RunTime= 0h 0.91m CPUload=1269% saphyr1c 2022-11-14 19:57:10,510:INFO: Finished Multi-Threaded Process: refineB0 2022-11-14 19:57:10,517:INFO: refineB0 1 completed in: 54.8s Result Found refineB0 2 completed in: 43.2s Result Found refineB0 3 completed in: 55.5s Result Found refineB0 4 completed in: 54.7s Result Found refineB0 5 completed in: 46.7s Result Found refineB0 6 completed in: 54.7s Result Found refineB0 7 completed in: 58.2s Result Found refineB0 8 completed in: 57.8s Result Found refineB0 9 completed in: 50.7s Result Found refineB0 10 completed in: 55.7s Result Found refineB0 11 completed in: 45.1s Result Found refineB0 12 completed in: 52.9s Result Found refineB0 13 completed in: 54.5s Result Found refineB0 14 completed in: 46.6s Result Found refineB0 15 completed in: 54.5s Result Found refineB0 16 completed in: 58.0s Result Found refineB0 17 completed in: 57.6s Result Found refineB0 18 completed in: 54.9s Result Found refineB0 19 completed in: 22.1s Result Found refineB0 20 completed in: 22.3s Result Found Completed 20 jobs on 56 threads Clock time: 0h 0.97m CPU time : 0h 16.67m Begin machine parsable segment for: refineB0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineB0_bnx1 54.76605 712.66 22.35 0:52.58 1397% 1897528 Mon Nov 14 14:19:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx2 43.24897 676.01 22.95 0:40.65 1719% 1896576 Mon Nov 14 14:09:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx3 55.45395 684.09 25.87 0:51.89 1368% 1898948 Mon Nov 14 14:10:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx4 54.74104 683.44 26.17 0:50.73 1398% 1891756 Mon Nov 14 13:50:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx5 46.72032 672.17 22.68 0:43.60 1593% 1899764 Mon Nov 14 14:10:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx6 54.66269 680.49 26.92 0:50.44 1402% 1895424 Mon Nov 14 14:10:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx7 58.21226 669.78 22.47 0:54.54 1269% 1898204 Mon Nov 14 14:13:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx8 57.81673 668.01 25.20 0:53.57 1293% 1894988 Mon Nov 14 14:10:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx9 50.72412 677.70 23.36 0:45.30 1547% 1893828 Mon Nov 14 14:10:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx10 55.65390 727.76 24.10 0:52.60 1429% 1897088 Mon Nov 14 14:19:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx11 45.10427 672.47 22.87 0:42.25 1645% 1896508 Mon Nov 14 14:09:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx12 52.90789 684.68 24.37 0:46.05 1539% 1896228 Mon Nov 14 14:10:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx13 54.52394 675.02 24.33 0:50.71 1379% 1892916 Mon Nov 14 13:50:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx14 46.55216 668.18 23.01 0:43.65 1583% 1891012 Mon Nov 14 14:10:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx15 54.46281 673.16 25.08 0:50.19 1391% 1895624 Mon Nov 14 14:10:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx16 57.96186 674.90 23.54 0:54.53 1280% 1894228 Mon Nov 14 14:13:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx17 57.55443 679.39 26.68 0:53.87 1310% 1899480 Mon Nov 14 14:10:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx18 54.89832 677.29 24.12 0:51.74 1355% 1898780 Mon Nov 14 14:10:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx19 22.14492 528.24 17.67 0:20.15 2708% 1887384 Mon Nov 14 14:09:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx20 22.32163 535.92 21.41 0:20.23 2755% 1890824 Mon Nov 14 14:09:37 CST 2022 2022-11-14 19:57:10,517:INFO:************************* Executing stage 6: refineB1 ************************* 2022-11-14 19:57:10,517:INFO:Starting stage refineB1 2022-11-14 19:57:10,517:INFO:refineB1 maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 19:57:10,518:INFO:Generating Jobs for refineB1, conf.extensionCount= 0 2022-11-14 19:57:10,518:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0 inputContigPrefix= exp_refineB0 2022-11-14 19:57:10,598:INFO:refineB1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 56 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/exp_refineB1 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_group1 -f -stdout -stderr -T 1e-12 -usecolor 1 -A 5 -S 0 -L 130 -maptype 0 -extend 1 -MaxCov 80 -MaxCovWt 0 -contigsplit 0.20 0.25 /home/bionano/access/local/jobs/10230251/output/contigs/ID -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -splitFragile 20 2.0 0 -TrimNorm 0 30.0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -skip_dist 0.01 0.01 -endoutlierFinal 1 -RTHETA_FIX 0 -nosplit 2 -EndTrim 7.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtOutlier 0.0 -biaswtRefine 0.7 1 -PVres 2 -PVendoutlier -AlignRes 1.5 -rres 0.9 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -mres 0.9 -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 -BestRefWT 0 -AddFragsWT 0 -MultiMatches 0 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-4 1e-3 -outlierRef 1e-3 1e-2 -LRbias 1e0 -RefineRange 6 6 -RefineErr 1e-6 1e-6 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 6 -deltaYRef 6 -deltaExtXRef 8 -deltaExtYRef 8 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -TB 1e-6 1e-6 -TBmult 0 -FN_Refine 1.0 1.0 0.0 0.0 -cres 5.6 2 0.05 -cresCheckDel 1 -cresMaxLPdrop 4.0 -cresRefine -1 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 2 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 2.0 -FN 0.10 -sf 0.12 -sd 0.0 -sr 0.03 -res 3.1 -resSD 0.75 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx16/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx17/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx18/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx19/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx20/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 19:57:10,598:INFO: Starting Multi-Threaded Process: refineB1 2022-11-14 19:57:10,598:INFO:conda_env=None,conda_source=None 2022-11-14 19:57:10,599:INFO: Running 438 jobs with 56 threads, sleepTime=0.01 2022-11-14 19:57:10,695:INFO: START 1: refineB1 1, 56 Thr, 1 R, 438 T, 0 F, 437 Q 2022-11-14 19:57:10,736:INFO: START 2: refineB1 2, 56 Thr, 2 R, 438 T, 0 F, 436 Q 2022-11-14 19:57:10,767:INFO: START 3: refineB1 3, 56 Thr, 3 R, 438 T, 0 F, 435 Q 2022-11-14 19:57:10,792:INFO: START 4: refineB1 4, 56 Thr, 4 R, 438 T, 0 F, 434 Q 2022-11-14 19:57:10,817:INFO: START 5: refineB1 5, 56 Thr, 5 R, 438 T, 0 F, 433 Q 2022-11-14 19:57:10,842:INFO: START 6: refineB1 6, 56 Thr, 6 R, 438 T, 0 F, 432 Q 2022-11-14 19:57:10,867:INFO: START 7: refineB1 7, 56 Thr, 7 R, 438 T, 0 F, 431 Q 2022-11-14 19:57:10,894:INFO: START 8: refineB1 8, 56 Thr, 8 R, 438 T, 0 F, 430 Q 2022-11-14 19:57:10,918:INFO: START 9: refineB1 9, 56 Thr, 9 R, 438 T, 0 F, 429 Q 2022-11-14 19:57:10,943:INFO: START 10: refineB1 10, 56 Thr, 10 R, 438 T, 0 F, 428 Q 2022-11-14 19:57:10,968:INFO: START 11: refineB1 11, 56 Thr, 11 R, 438 T, 0 F, 427 Q 2022-11-14 19:57:10,992:INFO: START 12: refineB1 12, 56 Thr, 12 R, 438 T, 0 F, 426 Q 2022-11-14 19:57:11,019:INFO: START 13: refineB1 13, 56 Thr, 13 R, 438 T, 0 F, 425 Q 2022-11-14 19:57:11,044:INFO: START 14: refineB1 14, 56 Thr, 14 R, 438 T, 0 F, 424 Q 2022-11-14 19:57:11,069:INFO: START 15: refineB1 15, 56 Thr, 15 R, 438 T, 0 F, 423 Q 2022-11-14 19:57:11,094:INFO: START 16: refineB1 16, 56 Thr, 16 R, 438 T, 0 F, 422 Q 2022-11-14 19:57:11,119:INFO: START 17: refineB1 17, 56 Thr, 17 R, 438 T, 0 F, 421 Q 2022-11-14 19:57:11,144:INFO: START 18: refineB1 18, 56 Thr, 18 R, 438 T, 0 F, 420 Q 2022-11-14 19:57:11,169:INFO: START 19: refineB1 19, 56 Thr, 19 R, 438 T, 0 F, 419 Q 2022-11-14 19:57:11,194:INFO: START 20: refineB1 20, 56 Thr, 20 R, 438 T, 0 F, 418 Q 2022-11-14 19:57:11,218:INFO: START 21: refineB1 21, 56 Thr, 21 R, 438 T, 0 F, 417 Q 2022-11-14 19:57:11,243:INFO: START 22: refineB1 22, 56 Thr, 22 R, 438 T, 0 F, 416 Q 2022-11-14 19:57:11,292:INFO: START 23: refineB1 23, 56 Thr, 23 R, 438 T, 0 F, 415 Q 2022-11-14 19:57:11,316:INFO: START 24: refineB1 24, 28 Thr, 24 R, 438 T, 0 F, 414 Q 2022-11-14 19:57:11,339:INFO: START 25: refineB1 25, 28 Thr, 25 R, 438 T, 0 F, 413 Q 2022-11-14 19:57:11,377:INFO: START 26: refineB1 26, 28 Thr, 26 R, 438 T, 0 F, 412 Q 2022-11-14 19:57:11,400:INFO: START 27: refineB1 27, 28 Thr, 27 R, 438 T, 0 F, 411 Q 2022-11-14 19:57:11,424:INFO: START 28: refineB1 28, 28 Thr, 28 R, 438 T, 0 F, 410 Q 2022-11-14 19:57:11,447:INFO: START 29: refineB1 29, 28 Thr, 29 R, 438 T, 0 F, 409 Q 2022-11-14 19:57:11,471:INFO: START 30: refineB1 30, 28 Thr, 30 R, 438 T, 0 F, 408 Q 2022-11-14 19:57:11,494:INFO: START 31: refineB1 31, 28 Thr, 31 R, 438 T, 0 F, 407 Q 2022-11-14 19:57:11,517:INFO: START 32: refineB1 32, 28 Thr, 32 R, 438 T, 0 F, 406 Q 2022-11-14 19:57:11,541:INFO: START 33: refineB1 33, 28 Thr, 33 R, 438 T, 0 F, 405 Q 2022-11-14 19:57:11,565:INFO: START 34: refineB1 34, 28 Thr, 34 R, 438 T, 0 F, 404 Q 2022-11-14 19:57:11,588:INFO: START 35: refineB1 44, 14 Thr, 35 R, 438 T, 0 F, 403 Q 2022-11-14 19:57:11,612:INFO: START 36: refineB1 35, 14 Thr, 36 R, 438 T, 0 F, 402 Q 2022-11-14 19:57:11,636:INFO: START 37: refineB1 45, 14 Thr, 37 R, 438 T, 0 F, 401 Q 2022-11-14 19:57:11,659:INFO: START 38: refineB1 53, 14 Thr, 38 R, 438 T, 0 F, 400 Q 2022-11-14 19:57:11,682:INFO: START 39: refineB1 36, 14 Thr, 39 R, 438 T, 0 F, 399 Q 2022-11-14 19:57:11,705:INFO: START 40: refineB1 54, 14 Thr, 40 R, 438 T, 0 F, 398 Q 2022-11-14 19:57:11,729:INFO: START 41: refineB1 46, 14 Thr, 41 R, 438 T, 0 F, 397 Q 2022-11-14 19:57:11,752:INFO: START 42: refineB1 55, 14 Thr, 42 R, 438 T, 0 F, 396 Q 2022-11-14 19:57:11,776:INFO: START 43: refineB1 37, 14 Thr, 43 R, 438 T, 0 F, 395 Q 2022-11-14 19:57:11,800:INFO: START 44: refineB1 56, 14 Thr, 44 R, 438 T, 0 F, 394 Q 2022-11-14 19:57:11,824:INFO: START 45: refineB1 47, 14 Thr, 45 R, 438 T, 0 F, 393 Q 2022-11-14 19:57:11,855:INFO: START 46: refineB1 48, 14 Thr, 46 R, 438 T, 0 F, 392 Q 2022-11-14 19:57:11,880:INFO: START 47: refineB1 57, 14 Thr, 47 R, 438 T, 0 F, 391 Q 2022-11-14 19:57:11,904:INFO: START 48: refineB1 87, 14 Thr, 48 R, 438 T, 0 F, 390 Q 2022-11-14 19:57:11,979:INFO: START 49: refineB1 88, 14 Thr, 49 R, 438 T, 0 F, 389 Q 2022-11-14 19:57:12,794:INFO: START 50: refineB1 89, 14 Thr, 50 R, 438 T, 0 F, 388 Q 2022-11-14 19:57:12,854:INFO: START 51: refineB1 38, 14 Thr, 51 R, 438 T, 0 F, 387 Q 2022-11-14 19:57:12,975:INFO: START 52: refineB1 90, 14 Thr, 52 R, 438 T, 0 F, 386 Q 2022-11-14 19:57:13,000:INFO: START 53: refineB1 91, 14 Thr, 53 R, 438 T, 0 F, 385 Q 2022-11-14 19:57:13,025:INFO: START 54: refineB1 39, 14 Thr, 54 R, 438 T, 0 F, 384 Q 2022-11-14 19:57:13,049:INFO: START 55: refineB1 58, 14 Thr, 55 R, 438 T, 0 F, 383 Q 2022-11-14 19:57:13,073:INFO: START 56: refineB1 92, 14 Thr, 56 R, 438 T, 0 F, 382 Q 2022-11-14 19:57:13,097:INFO: START 57: refineB1 93, 14 Thr, 57 R, 438 T, 0 F, 381 Q 2022-11-14 19:57:13,123:INFO: START 58: refineB1 94, 14 Thr, 58 R, 438 T, 0 F, 380 Q 2022-11-14 19:57:13,146:INFO: START 59: refineB1 95, 14 Thr, 59 R, 438 T, 0 F, 379 Q 2022-11-14 19:57:13,186:INFO: START 60: refineB1 96, 14 Thr, 60 R, 438 T, 0 F, 378 Q 2022-11-14 19:57:13,227:INFO: START 61: refineB1 97, 14 Thr, 61 R, 438 T, 0 F, 377 Q 2022-11-14 19:57:13,251:INFO: START 62: refineB1 59, 14 Thr, 62 R, 438 T, 0 F, 376 Q 2022-11-14 19:57:13,275:INFO: START 63: refineB1 98, 14 Thr, 63 R, 438 T, 0 F, 375 Q 2022-11-14 19:57:13,299:INFO: START 64: refineB1 49, 14 Thr, 64 R, 438 T, 0 F, 374 Q 2022-11-14 19:57:13,324:INFO: START 65: refineB1 99, 14 Thr, 65 R, 438 T, 0 F, 373 Q 2022-11-14 19:57:13,348:INFO: START 66: refineB1 100, 14 Thr, 66 R, 438 T, 0 F, 372 Q 2022-11-14 19:57:13,371:INFO: START 67: refineB1 185, 14 Thr, 67 R, 438 T, 0 F, 371 Q 2022-11-14 19:57:13,454:INFO: START 68: refineB1 60, 14 Thr, 68 R, 438 T, 0 F, 370 Q 2022-11-14 19:57:13,479:INFO: START 69: refineB1 101, 14 Thr, 69 R, 438 T, 0 F, 369 Q 2022-11-14 19:57:13,503:INFO: START 70: refineB1 186, 14 Thr, 70 R, 438 T, 0 F, 368 Q 2022-11-14 19:57:13,527:INFO: START 71: refineB1 102, 14 Thr, 71 R, 438 T, 0 F, 367 Q 2022-11-14 19:57:13,552:INFO: START 72: refineB1 187, 14 Thr, 72 R, 438 T, 0 F, 366 Q 2022-11-14 19:57:13,576:INFO: START 73: refineB1 103, 14 Thr, 73 R, 438 T, 0 F, 365 Q 2022-11-14 19:57:13,601:INFO: START 74: refineB1 40, 14 Thr, 74 R, 438 T, 0 F, 364 Q 2022-11-14 19:57:13,641:INFO: START 75: refineB1 188, 14 Thr, 75 R, 438 T, 0 F, 363 Q 2022-11-14 19:57:13,666:INFO: START 76: refineB1 104, 14 Thr, 76 R, 438 T, 0 F, 362 Q 2022-11-14 19:57:13,690:INFO: START 77: refineB1 105, 14 Thr, 77 R, 438 T, 0 F, 361 Q 2022-11-14 19:57:13,715:INFO: START 78: refineB1 189, 14 Thr, 78 R, 438 T, 0 F, 360 Q 2022-11-14 19:57:13,740:INFO: START 79: refineB1 106, 14 Thr, 79 R, 438 T, 0 F, 359 Q 2022-11-14 19:57:13,764:INFO: START 80: refineB1 190, 14 Thr, 80 R, 438 T, 0 F, 358 Q 2022-11-14 19:57:13,788:INFO: START 81: refineB1 107, 14 Thr, 81 R, 438 T, 0 F, 357 Q 2022-11-14 19:57:13,813:INFO: START 82: refineB1 191, 14 Thr, 82 R, 438 T, 0 F, 356 Q 2022-11-14 19:57:13,837:INFO: START 83: refineB1 61, 14 Thr, 83 R, 438 T, 0 F, 355 Q 2022-11-14 19:57:13,862:INFO: START 84: refineB1 192, 14 Thr, 84 R, 438 T, 0 F, 354 Q 2022-11-14 19:57:13,885:INFO: START 85: refineB1 108, 14 Thr, 85 R, 438 T, 0 F, 353 Q 2022-11-14 19:57:13,910:INFO: START 86: refineB1 193, 14 Thr, 86 R, 438 T, 0 F, 352 Q 2022-11-14 19:57:13,935:INFO: START 87: refineB1 109, 14 Thr, 87 R, 438 T, 0 F, 351 Q 2022-11-14 19:57:13,960:INFO: START 88: refineB1 194, 14 Thr, 88 R, 438 T, 0 F, 350 Q 2022-11-14 19:57:13,985:INFO: START 89: refineB1 110, 14 Thr, 89 R, 438 T, 0 F, 349 Q 2022-11-14 19:57:14,039:INFO: START 90: refineB1 195, 14 Thr, 90 R, 438 T, 0 F, 348 Q 2022-11-14 19:57:14,106:INFO: START 91: refineB1 111, 14 Thr, 91 R, 438 T, 0 F, 347 Q 2022-11-14 19:57:14,132:INFO: START 92: refineB1 41, 14 Thr, 92 R, 438 T, 0 F, 346 Q 2022-11-14 19:57:14,158:INFO: START 93: refineB1 112, 14 Thr, 93 R, 438 T, 0 F, 345 Q 2022-11-14 19:57:14,183:INFO: START 94: refineB1 196, 14 Thr, 94 R, 438 T, 0 F, 344 Q 2022-11-14 19:57:14,224:INFO: START 95: refineB1 113, 14 Thr, 95 R, 438 T, 0 F, 343 Q 2022-11-14 19:57:14,250:INFO: START 96: refineB1 197, 14 Thr, 96 R, 438 T, 0 F, 342 Q 2022-11-14 19:57:14,275:INFO: START 97: refineB1 62, 14 Thr, 97 R, 438 T, 0 F, 341 Q 2022-11-14 19:57:14,339:INFO: START 98: refineB1 114, 14 Thr, 98 R, 438 T, 0 F, 340 Q 2022-11-14 19:57:14,364:INFO: START 99: refineB1 198, 14 Thr, 99 R, 438 T, 0 F, 339 Q 2022-11-14 19:57:14,390:INFO: START 100: refineB1 115, 14 Thr, 100 R, 438 T, 0 F, 338 Q 2022-11-14 19:57:14,415:INFO: START 101: refineB1 199, 14 Thr, 101 R, 438 T, 0 F, 337 Q 2022-11-14 19:57:14,440:INFO: START 102: refineB1 116, 14 Thr, 102 R, 438 T, 0 F, 336 Q 2022-11-14 19:57:14,466:INFO: START 103: refineB1 200, 14 Thr, 103 R, 438 T, 0 F, 335 Q 2022-11-14 19:57:14,491:INFO: START 104: refineB1 117, 14 Thr, 104 R, 438 T, 0 F, 334 Q 2022-11-14 19:57:14,516:INFO: START 105: refineB1 63, 14 Thr, 105 R, 438 T, 0 F, 333 Q 2022-11-14 19:57:14,542:INFO: START 106: refineB1 118, 14 Thr, 106 R, 438 T, 0 F, 332 Q 2022-11-14 19:57:14,568:INFO: START 107: refineB1 201, 14 Thr, 107 R, 438 T, 0 F, 331 Q 2022-11-14 19:57:14,595:INFO: START 108: refineB1 119, 14 Thr, 108 R, 438 T, 0 F, 330 Q 2022-11-14 19:57:14,620:INFO: START 109: refineB1 202, 14 Thr, 109 R, 438 T, 0 F, 329 Q 2022-11-14 19:57:14,645:INFO: START 110: refineB1 203, 14 Thr, 110 R, 438 T, 0 F, 328 Q 2022-11-14 19:57:14,671:INFO: START 111: refineB1 120, 14 Thr, 111 R, 438 T, 0 F, 327 Q 2022-11-14 19:57:14,771:INFO: START 112: refineB1 204, 14 Thr, 112 R, 438 T, 0 F, 326 Q 2022-11-14 19:57:14,796:INFO: START 113: refineB1 64, 14 Thr, 113 R, 438 T, 0 F, 325 Q 2022-11-14 19:57:14,822:INFO: START 114: refineB1 121, 14 Thr, 114 R, 438 T, 0 F, 324 Q 2022-11-14 19:57:14,848:INFO: START 115: refineB1 205, 14 Thr, 115 R, 438 T, 0 F, 323 Q 2022-11-14 19:57:14,874:INFO: START 116: refineB1 206, 14 Thr, 116 R, 438 T, 0 F, 322 Q 2022-11-14 19:57:14,899:INFO: START 117: refineB1 122, 14 Thr, 117 R, 438 T, 0 F, 321 Q 2022-11-14 19:57:14,925:INFO: START 118: refineB1 207, 14 Thr, 118 R, 438 T, 0 F, 320 Q 2022-11-14 19:57:14,950:INFO: START 119: refineB1 208, 14 Thr, 119 R, 438 T, 0 F, 319 Q 2022-11-14 19:57:14,976:INFO: START 120: refineB1 123, 14 Thr, 120 R, 438 T, 0 F, 318 Q 2022-11-14 19:57:15,001:INFO: START 121: refineB1 209, 14 Thr, 121 R, 438 T, 0 F, 317 Q 2022-11-14 19:57:15,067:INFO: START 122: refineB1 210, 14 Thr, 122 R, 438 T, 0 F, 316 Q 2022-11-14 19:57:15,094:INFO: START 123: refineB1 124, 14 Thr, 123 R, 438 T, 0 F, 315 Q 2022-11-14 19:57:15,119:INFO: START 124: refineB1 211, 14 Thr, 124 R, 438 T, 0 F, 314 Q 2022-11-14 19:57:15,145:INFO: START 125: refineB1 125, 14 Thr, 125 R, 438 T, 0 F, 313 Q 2022-11-14 19:57:15,171:INFO: START 126: refineB1 126, 14 Thr, 126 R, 438 T, 0 F, 312 Q 2022-11-14 19:57:15,197:INFO: START 127: refineB1 65, 14 Thr, 127 R, 438 T, 0 F, 311 Q 2022-11-14 19:57:15,223:INFO: START 128: refineB1 127, 14 Thr, 128 R, 438 T, 0 F, 310 Q 2022-11-14 19:57:15,249:INFO: START 129: refineB1 212, 14 Thr, 129 R, 438 T, 0 F, 309 Q 2022-11-14 19:57:15,275:INFO: START 130: refineB1 128, 14 Thr, 130 R, 438 T, 0 F, 308 Q 2022-11-14 19:57:15,300:INFO: START 131: refineB1 213, 14 Thr, 131 R, 438 T, 0 F, 307 Q 2022-11-14 19:57:15,326:INFO: START 132: refineB1 214, 14 Thr, 132 R, 438 T, 0 F, 306 Q 2022-11-14 19:57:15,352:INFO: START 133: refineB1 215, 14 Thr, 133 R, 438 T, 0 F, 305 Q 2022-11-14 19:57:15,379:INFO: START 134: refineB1 129, 14 Thr, 134 R, 438 T, 0 F, 304 Q 2022-11-14 19:57:15,405:INFO: START 135: refineB1 216, 14 Thr, 135 R, 438 T, 0 F, 303 Q 2022-11-14 19:57:15,431:INFO: START 136: refineB1 66, 14 Thr, 136 R, 438 T, 0 F, 302 Q 2022-11-14 19:57:15,458:INFO: START 137: refineB1 130, 14 Thr, 137 R, 438 T, 0 F, 301 Q 2022-11-14 19:57:15,484:INFO: START 138: refineB1 217, 14 Thr, 138 R, 438 T, 0 F, 300 Q 2022-11-14 19:57:15,509:INFO: START 139: refineB1 218, 14 Thr, 139 R, 438 T, 0 F, 299 Q 2022-11-14 19:57:15,535:INFO: START 140: refineB1 131, 14 Thr, 140 R, 438 T, 0 F, 298 Q 2022-11-14 19:57:15,561:INFO: START 141: refineB1 219, 14 Thr, 141 R, 438 T, 0 F, 297 Q 2022-11-14 19:57:15,588:INFO: START 142: refineB1 132, 14 Thr, 142 R, 438 T, 0 F, 296 Q 2022-11-14 19:57:15,639:INFO: START 143: refineB1 133, 14 Thr, 143 R, 438 T, 0 F, 295 Q 2022-11-14 19:57:15,664:INFO: START 144: refineB1 220, 14 Thr, 144 R, 438 T, 0 F, 294 Q 2022-11-14 19:57:15,690:INFO: START 145: refineB1 50, 14 Thr, 145 R, 438 T, 0 F, 293 Q 2022-11-14 19:57:15,716:INFO: START 146: refineB1 134, 14 Thr, 146 R, 438 T, 0 F, 292 Q 2022-11-14 19:57:15,741:INFO: START 147: refineB1 221, 14 Thr, 147 R, 438 T, 0 F, 291 Q 2022-11-14 19:57:15,767:INFO: START 148: refineB1 67, 14 Thr, 148 R, 438 T, 0 F, 290 Q 2022-11-14 19:57:15,805:INFO: START 149: refineB1 135, 14 Thr, 149 R, 438 T, 0 F, 289 Q 2022-11-14 19:57:15,831:INFO: START 150: refineB1 136, 14 Thr, 150 R, 438 T, 0 F, 288 Q 2022-11-14 19:57:15,857:INFO: START 151: refineB1 222, 14 Thr, 151 R, 438 T, 0 F, 287 Q 2022-11-14 19:57:15,889:INFO: START 152: refineB1 137, 14 Thr, 152 R, 438 T, 0 F, 286 Q 2022-11-14 19:57:15,915:INFO: START 153: refineB1 223, 14 Thr, 153 R, 438 T, 0 F, 285 Q 2022-11-14 19:57:15,940:INFO: START 154: refineB1 138, 14 Thr, 154 R, 438 T, 0 F, 284 Q 2022-11-14 19:57:15,989:INFO: START 155: refineB1 224, 14 Thr, 155 R, 438 T, 0 F, 283 Q 2022-11-14 19:57:16,014:INFO: START 156: refineB1 139, 14 Thr, 156 R, 438 T, 0 F, 282 Q 2022-11-14 19:57:16,057:INFO: START 157: refineB1 68, 14 Thr, 157 R, 438 T, 0 F, 281 Q 2022-11-14 19:57:16,091:INFO: START 158: refineB1 42, 14 Thr, 158 R, 438 T, 0 F, 280 Q 2022-11-14 19:57:16,116:INFO: START 159: refineB1 225, 14 Thr, 159 R, 438 T, 0 F, 279 Q 2022-11-14 19:57:16,142:INFO: START 160: refineB1 140, 14 Thr, 160 R, 438 T, 0 F, 278 Q 2022-11-14 19:57:16,183:INFO: START 161: refineB1 226, 14 Thr, 161 R, 438 T, 0 F, 277 Q 2022-11-14 19:57:16,207:INFO: START 162: refineB1 141, 14 Thr, 162 R, 438 T, 0 F, 276 Q 2022-11-14 19:57:16,255:INFO: START 163: refineB1 227, 14 Thr, 163 R, 438 T, 0 F, 275 Q 2022-11-14 19:57:16,280:INFO: START 164: refineB1 142, 14 Thr, 164 R, 438 T, 0 F, 274 Q 2022-11-14 19:57:16,305:INFO: START 165: refineB1 143, 14 Thr, 165 R, 438 T, 0 F, 273 Q 2022-11-14 19:57:16,330:INFO: START 166: refineB1 69, 14 Thr, 166 R, 438 T, 0 F, 272 Q 2022-11-14 19:57:16,354:INFO: START 167: refineB1 228, 14 Thr, 167 R, 438 T, 0 F, 271 Q 2022-11-14 19:57:16,407:INFO: START 168: refineB1 144, 14 Thr, 168 R, 438 T, 0 F, 270 Q 2022-11-14 19:57:16,464:INFO: START 169: refineB1 229, 14 Thr, 169 R, 438 T, 0 F, 269 Q 2022-11-14 19:57:16,489:INFO: START 170: refineB1 145, 14 Thr, 170 R, 438 T, 0 F, 268 Q 2022-11-14 19:57:16,512:INFO: START 171: refineB1 230, 14 Thr, 171 R, 438 T, 0 F, 267 Q 2022-11-14 19:57:16,536:INFO: START 172: refineB1 146, 14 Thr, 172 R, 438 T, 0 F, 266 Q 2022-11-14 19:57:16,560:INFO: START 173: refineB1 231, 14 Thr, 173 R, 438 T, 0 F, 265 Q 2022-11-14 19:57:16,584:INFO: START 174: refineB1 147, 14 Thr, 174 R, 438 T, 0 F, 264 Q 2022-11-14 19:57:16,609:INFO: START 175: refineB1 70, 14 Thr, 175 R, 438 T, 0 F, 263 Q 2022-11-14 19:57:16,633:INFO: START 176: refineB1 232, 14 Thr, 176 R, 438 T, 0 F, 262 Q 2022-11-14 19:57:16,659:INFO: START 177: refineB1 148, 14 Thr, 177 R, 438 T, 0 F, 261 Q 2022-11-14 19:57:16,683:INFO: START 178: refineB1 149, 14 Thr, 178 R, 438 T, 0 F, 260 Q 2022-11-14 19:57:16,707:INFO: START 179: refineB1 233, 14 Thr, 179 R, 438 T, 0 F, 259 Q 2022-11-14 19:57:16,731:INFO: START 180: refineB1 150, 14 Thr, 180 R, 438 T, 0 F, 258 Q 2022-11-14 19:57:16,777:INFO: START 181: refineB1 51, 14 Thr, 181 R, 438 T, 0 F, 257 Q 2022-11-14 19:57:16,801:INFO: START 182: refineB1 71, 14 Thr, 182 R, 438 T, 0 F, 256 Q 2022-11-14 19:57:16,825:INFO: START 183: refineB1 151, 14 Thr, 183 R, 438 T, 0 F, 255 Q 2022-11-14 19:57:16,849:INFO: START 184: refineB1 234, 14 Thr, 184 R, 438 T, 0 F, 254 Q 2022-11-14 19:57:16,876:INFO: START 185: refineB1 235, 14 Thr, 185 R, 438 T, 0 F, 253 Q 2022-11-14 19:57:16,900:INFO: START 186: refineB1 152, 14 Thr, 186 R, 438 T, 0 F, 252 Q 2022-11-14 19:57:16,925:INFO: START 187: refineB1 72, 14 Thr, 187 R, 438 T, 0 F, 251 Q 2022-11-14 19:57:16,949:INFO: START 188: refineB1 236, 14 Thr, 188 R, 438 T, 0 F, 250 Q 2022-11-14 19:57:16,973:INFO: START 189: refineB1 153, 14 Thr, 189 R, 438 T, 0 F, 249 Q 2022-11-14 19:57:17,070:INFO: START 190: refineB1 237, 14 Thr, 190 R, 438 T, 0 F, 248 Q 2022-11-14 19:57:17,101:INFO: START 191: refineB1 73, 14 Thr, 191 R, 438 T, 0 F, 247 Q 2022-11-14 19:57:17,126:INFO: START 192: refineB1 154, 14 Thr, 192 R, 438 T, 0 F, 246 Q 2022-11-14 19:57:17,150:INFO: START 193: refineB1 238, 14 Thr, 193 R, 438 T, 0 F, 245 Q 2022-11-14 19:57:17,173:INFO: START 194: refineB1 155, 14 Thr, 194 R, 438 T, 0 F, 244 Q 2022-11-14 19:57:17,197:INFO: START 195: refineB1 156, 14 Thr, 195 R, 438 T, 0 F, 243 Q 2022-11-14 19:57:17,221:INFO: START 196: refineB1 239, 14 Thr, 196 R, 438 T, 0 F, 242 Q 2022-11-14 19:57:17,245:INFO: START 197: refineB1 240, 14 Thr, 197 R, 438 T, 0 F, 241 Q 2022-11-14 19:57:17,268:INFO: START 198: refineB1 157, 14 Thr, 198 R, 438 T, 0 F, 240 Q 2022-11-14 19:57:17,292:INFO: START 199: refineB1 74, 14 Thr, 199 R, 438 T, 0 F, 239 Q 2022-11-14 19:57:17,316:INFO: START 200: refineB1 158, 14 Thr, 200 R, 438 T, 0 F, 238 Q 2022-11-14 19:57:17,351:INFO: START 201: refineB1 241, 14 Thr, 201 R, 438 T, 0 F, 237 Q 2022-11-14 19:57:25,331:INFO: START 202: refineB1 159, 14 Thr, 202 R, 438 T, 0 F, 236 Q 2022-11-14 19:57:33,235:INFO: START 203: refineB1 242, 14 Thr, 203 R, 438 T, 0 F, 235 Q 2022-11-14 19:57:37,626:INFO: START 204: refineB1 243, 14 Thr, 204 R, 438 T, 0 F, 234 Q 2022-11-14 19:57:39,062:INFO: START 205: refineB1 160, 14 Thr, 205 R, 438 T, 0 F, 233 Q 2022-11-14 19:57:40,504:INFO: START 206: refineB1 244, 14 Thr, 206 R, 438 T, 0 F, 232 Q 2022-11-14 19:57:41,443:INFO: START 207: refineB1 245, 14 Thr, 207 R, 438 T, 0 F, 231 Q 2022-11-14 19:57:42,829:INFO: START 208: refineB1 75, 14 Thr, 208 R, 438 T, 0 F, 230 Q 2022-11-14 19:57:44,332:INFO: START 209: refineB1 161, 14 Thr, 209 R, 438 T, 0 F, 229 Q 2022-11-14 19:57:44,827:INFO: START 210: refineB1 246, 14 Thr, 210 R, 438 T, 0 F, 228 Q 2022-11-14 19:57:45,491:INFO: START 211: refineB1 162, 14 Thr, 211 R, 438 T, 0 F, 227 Q 2022-11-14 19:57:49,553:INFO: START 212: refineB1 247, 14 Thr, 212 R, 438 T, 0 F, 226 Q 2022-11-14 19:57:52,041:INFO: START 213: refineB1 76, 14 Thr, 213 R, 438 T, 0 F, 225 Q 2022-11-14 19:57:54,718:INFO: START 214: refineB1 163, 14 Thr, 214 R, 438 T, 0 F, 224 Q 2022-11-14 19:57:58,607:INFO: START 215: refineB1 164, 14 Thr, 215 R, 438 T, 0 F, 223 Q 2022-11-14 19:58:02,287:INFO: START 216: refineB1 248, 14 Thr, 216 R, 438 T, 0 F, 222 Q 2022-11-14 19:58:03,803:INFO: START 217: refineB1 165, 14 Thr, 217 R, 438 T, 0 F, 221 Q 2022-11-14 19:58:05,625:INFO: START 218: refineB1 77, 14 Thr, 218 R, 438 T, 0 F, 220 Q 2022-11-14 19:58:07,103:INFO: START 219: refineB1 249, 14 Thr, 219 R, 438 T, 0 F, 219 Q 2022-11-14 19:58:07,227:INFO: START 220: refineB1 166, 14 Thr, 220 R, 438 T, 0 F, 218 Q 2022-11-14 19:58:07,277:INFO: START 221: refineB1 250, 14 Thr, 221 R, 438 T, 0 F, 217 Q 2022-11-14 19:58:07,424:INFO: START 222: refineB1 78, 14 Thr, 222 R, 438 T, 0 F, 216 Q 2022-11-14 19:58:07,505:INFO: START 223: refineB1 167, 14 Thr, 223 R, 438 T, 0 F, 215 Q 2022-11-14 19:58:07,660:INFO: START 224: refineB1 251, 14 Thr, 224 R, 438 T, 0 F, 214 Q 2022-11-14 19:58:07,683:INFO: START 225: refineB1 79, 14 Thr, 225 R, 438 T, 0 F, 213 Q 2022-11-14 19:58:07,715:INFO: START 226: refineB1 252, 14 Thr, 226 R, 438 T, 0 F, 212 Q 2022-11-14 19:58:07,748:INFO: START 227: refineB1 168, 14 Thr, 227 R, 438 T, 0 F, 211 Q 2022-11-14 19:58:07,775:INFO: START 228: refineB1 253, 14 Thr, 228 R, 438 T, 0 F, 210 Q 2022-11-14 19:58:07,815:INFO: START 229: refineB1 80, 14 Thr, 229 R, 438 T, 0 F, 209 Q 2022-11-14 19:58:07,856:INFO: START 230: refineB1 169, 14 Thr, 230 R, 438 T, 0 F, 208 Q 2022-11-14 19:58:07,889:INFO: START 231: refineB1 254, 14 Thr, 231 R, 438 T, 0 F, 207 Q 2022-11-14 19:58:07,922:INFO: START 232: refineB1 170, 14 Thr, 232 R, 438 T, 0 F, 206 Q 2022-11-14 19:58:07,957:INFO: START 233: refineB1 52, 14 Thr, 233 R, 438 T, 0 F, 205 Q 2022-11-14 19:58:07,981:INFO: START 234: refineB1 255, 14 Thr, 234 R, 438 T, 0 F, 204 Q 2022-11-14 19:58:08,016:INFO: START 235: refineB1 256, 14 Thr, 235 R, 438 T, 0 F, 203 Q 2022-11-14 19:58:08,040:INFO: START 236: refineB1 171, 14 Thr, 236 R, 438 T, 0 F, 202 Q 2022-11-14 19:58:08,064:INFO: START 237: refineB1 257, 14 Thr, 237 R, 438 T, 0 F, 201 Q 2022-11-14 19:58:08,171:INFO: START 238: refineB1 43, 14 Thr, 238 R, 438 T, 0 F, 200 Q 2022-11-14 19:58:08,195:INFO: START 239: refineB1 172, 14 Thr, 239 R, 438 T, 0 F, 199 Q 2022-11-14 19:58:08,219:INFO: START 240: refineB1 258, 14 Thr, 240 R, 438 T, 0 F, 198 Q 2022-11-14 19:58:08,242:INFO: START 241: refineB1 259, 14 Thr, 241 R, 438 T, 0 F, 197 Q 2022-11-14 19:58:08,286:INFO: START 242: refineB1 260, 14 Thr, 242 R, 438 T, 0 F, 196 Q 2022-11-14 19:58:08,320:INFO: START 243: refineB1 261, 14 Thr, 243 R, 438 T, 0 F, 195 Q 2022-11-14 19:58:08,354:INFO: START 244: refineB1 262, 14 Thr, 244 R, 438 T, 0 F, 194 Q 2022-11-14 19:58:08,378:INFO: START 245: refineB1 263, 14 Thr, 245 R, 438 T, 0 F, 193 Q 2022-11-14 19:58:08,413:INFO: START 246: refineB1 264, 14 Thr, 246 R, 438 T, 0 F, 192 Q 2022-11-14 19:58:08,470:INFO: START 247: refineB1 265, 14 Thr, 247 R, 438 T, 0 F, 191 Q 2022-11-14 19:58:08,529:INFO: START 248: refineB1 266, 14 Thr, 248 R, 438 T, 0 F, 190 Q 2022-11-14 19:58:08,588:INFO: START 249: refineB1 267, 14 Thr, 249 R, 438 T, 0 F, 189 Q 2022-11-14 19:58:08,631:INFO: START 250: refineB1 268, 14 Thr, 250 R, 438 T, 0 F, 188 Q 2022-11-14 19:58:08,655:INFO: START 251: refineB1 269, 14 Thr, 251 R, 438 T, 0 F, 187 Q 2022-11-14 19:58:08,678:INFO: START 252: refineB1 270, 14 Thr, 252 R, 438 T, 0 F, 186 Q 2022-11-14 19:58:08,701:INFO: START 253: refineB1 271, 14 Thr, 253 R, 438 T, 0 F, 185 Q 2022-11-14 19:58:08,736:INFO: START 254: refineB1 272, 14 Thr, 254 R, 438 T, 0 F, 184 Q 2022-11-14 19:58:08,772:INFO: START 255: refineB1 273, 14 Thr, 255 R, 438 T, 0 F, 183 Q 2022-11-14 19:58:08,796:INFO: START 256: refineB1 274, 14 Thr, 256 R, 438 T, 0 F, 182 Q 2022-11-14 19:58:08,909:INFO: START 257: refineB1 275, 14 Thr, 257 R, 438 T, 0 F, 181 Q 2022-11-14 19:58:08,933:INFO: START 258: refineB1 276, 14 Thr, 258 R, 438 T, 0 F, 180 Q 2022-11-14 19:58:08,956:INFO: START 259: refineB1 277, 14 Thr, 259 R, 438 T, 0 F, 179 Q 2022-11-14 19:58:08,995:INFO: START 260: refineB1 278, 14 Thr, 260 R, 438 T, 0 F, 178 Q 2022-11-14 19:58:09,044:INFO: START 261: refineB1 279, 14 Thr, 261 R, 438 T, 0 F, 177 Q 2022-11-14 19:58:09,077:INFO: START 262: refineB1 280, 14 Thr, 262 R, 438 T, 0 F, 176 Q 2022-11-14 19:58:09,100:INFO: START 263: refineB1 281, 14 Thr, 263 R, 438 T, 0 F, 175 Q 2022-11-14 19:58:09,144:INFO: START 264: refineB1 282, 14 Thr, 264 R, 438 T, 0 F, 174 Q 2022-11-14 19:58:09,183:INFO: START 265: refineB1 283, 14 Thr, 265 R, 438 T, 0 F, 173 Q 2022-11-14 19:58:09,227:INFO: START 266: refineB1 284, 14 Thr, 266 R, 438 T, 0 F, 172 Q 2022-11-14 19:58:09,269:INFO: START 267: refineB1 285, 14 Thr, 267 R, 438 T, 0 F, 171 Q 2022-11-14 19:58:09,311:INFO: START 268: refineB1 286, 14 Thr, 268 R, 438 T, 0 F, 170 Q 2022-11-14 19:58:09,353:INFO: START 269: refineB1 287, 14 Thr, 269 R, 438 T, 0 F, 169 Q 2022-11-14 19:58:09,393:INFO: START 270: refineB1 288, 14 Thr, 270 R, 438 T, 0 F, 168 Q 2022-11-14 19:58:09,417:INFO: START 271: refineB1 289, 14 Thr, 271 R, 438 T, 0 F, 167 Q 2022-11-14 19:58:09,441:INFO: START 272: refineB1 290, 14 Thr, 272 R, 438 T, 0 F, 166 Q 2022-11-14 19:58:09,465:INFO: START 273: refineB1 291, 14 Thr, 273 R, 438 T, 0 F, 165 Q 2022-11-14 19:58:09,488:INFO: START 274: refineB1 292, 14 Thr, 274 R, 438 T, 0 F, 164 Q 2022-11-14 19:58:09,526:INFO: START 275: refineB1 293, 14 Thr, 275 R, 438 T, 0 F, 163 Q 2022-11-14 19:58:09,549:INFO: START 276: refineB1 294, 14 Thr, 276 R, 438 T, 0 F, 162 Q 2022-11-14 19:58:09,572:INFO: START 277: refineB1 295, 14 Thr, 277 R, 438 T, 0 F, 161 Q 2022-11-14 19:58:09,596:INFO: START 278: refineB1 296, 14 Thr, 278 R, 438 T, 0 F, 160 Q 2022-11-14 19:58:09,619:INFO: START 279: refineB1 297, 14 Thr, 279 R, 438 T, 0 F, 159 Q 2022-11-14 19:58:09,642:INFO: START 280: refineB1 298, 14 Thr, 280 R, 438 T, 0 F, 158 Q 2022-11-14 19:58:09,665:INFO: START 281: refineB1 299, 14 Thr, 281 R, 438 T, 0 F, 157 Q 2022-11-14 19:58:09,688:INFO: START 282: refineB1 300, 14 Thr, 282 R, 438 T, 0 F, 156 Q 2022-11-14 19:58:09,713:INFO: START 283: refineB1 301, 14 Thr, 283 R, 438 T, 0 F, 155 Q 2022-11-14 19:58:09,736:INFO: START 284: refineB1 302, 14 Thr, 284 R, 438 T, 0 F, 154 Q 2022-11-14 19:58:09,760:INFO: START 285: refineB1 303, 14 Thr, 285 R, 438 T, 0 F, 153 Q 2022-11-14 19:58:09,784:INFO: START 286: refineB1 304, 14 Thr, 286 R, 438 T, 0 F, 152 Q 2022-11-14 19:58:09,808:INFO: START 287: refineB1 305, 14 Thr, 287 R, 438 T, 0 F, 151 Q 2022-11-14 19:58:09,831:INFO: START 288: refineB1 306, 14 Thr, 288 R, 438 T, 0 F, 150 Q 2022-11-14 19:58:09,855:INFO: START 289: refineB1 307, 14 Thr, 289 R, 438 T, 0 F, 149 Q 2022-11-14 19:58:09,878:INFO: START 290: refineB1 308, 14 Thr, 290 R, 438 T, 0 F, 148 Q 2022-11-14 19:58:09,902:INFO: START 291: refineB1 309, 14 Thr, 291 R, 438 T, 0 F, 147 Q 2022-11-14 19:58:09,926:INFO: START 292: refineB1 310, 14 Thr, 292 R, 438 T, 0 F, 146 Q 2022-11-14 19:58:09,949:INFO: START 293: refineB1 311, 14 Thr, 293 R, 438 T, 0 F, 145 Q 2022-11-14 19:58:10,066:INFO: START 294: refineB1 312, 14 Thr, 294 R, 438 T, 0 F, 144 Q 2022-11-14 19:58:10,089:INFO: START 295: refineB1 313, 14 Thr, 295 R, 438 T, 0 F, 143 Q 2022-11-14 19:58:10,113:INFO: START 296: refineB1 314, 14 Thr, 296 R, 438 T, 0 F, 142 Q 2022-11-14 19:58:10,138:INFO: START 297: refineB1 315, 14 Thr, 297 R, 438 T, 0 F, 141 Q 2022-11-14 19:58:10,162:INFO: START 298: refineB1 316, 14 Thr, 298 R, 438 T, 0 F, 140 Q 2022-11-14 19:58:10,186:INFO: START 299: refineB1 317, 14 Thr, 299 R, 438 T, 0 F, 139 Q 2022-11-14 19:58:10,209:INFO: START 300: refineB1 318, 14 Thr, 300 R, 438 T, 0 F, 138 Q 2022-11-14 19:58:10,252:INFO: START 301: refineB1 319, 14 Thr, 301 R, 438 T, 0 F, 137 Q 2022-11-14 19:58:10,286:INFO: START 302: refineB1 320, 14 Thr, 302 R, 438 T, 0 F, 136 Q 2022-11-14 19:58:10,326:INFO: START 303: refineB1 321, 14 Thr, 303 R, 438 T, 0 F, 135 Q 2022-11-14 19:58:10,360:INFO: START 304: refineB1 322, 14 Thr, 304 R, 438 T, 0 F, 134 Q 2022-11-14 19:58:10,383:INFO: START 305: refineB1 323, 14 Thr, 305 R, 438 T, 0 F, 133 Q 2022-11-14 19:58:10,415:INFO: START 306: refineB1 324, 14 Thr, 306 R, 438 T, 0 F, 132 Q 2022-11-14 19:58:10,457:INFO: START 307: refineB1 325, 14 Thr, 307 R, 438 T, 0 F, 131 Q 2022-11-14 19:58:10,490:INFO: START 308: refineB1 326, 14 Thr, 308 R, 438 T, 0 F, 130 Q 2022-11-14 19:58:10,559:INFO: START 309: refineB1 327, 14 Thr, 309 R, 438 T, 0 F, 129 Q 2022-11-14 19:58:10,583:INFO: START 310: refineB1 328, 14 Thr, 310 R, 438 T, 0 F, 128 Q 2022-11-14 19:58:10,606:INFO: START 311: refineB1 329, 14 Thr, 311 R, 438 T, 0 F, 127 Q 2022-11-14 19:58:10,653:INFO: START 312: refineB1 330, 14 Thr, 312 R, 438 T, 0 F, 126 Q 2022-11-14 19:58:10,694:INFO: START 313: refineB1 331, 14 Thr, 313 R, 438 T, 0 F, 125 Q 2022-11-14 19:58:10,736:INFO: START 314: refineB1 332, 14 Thr, 314 R, 438 T, 0 F, 124 Q 2022-11-14 19:58:10,778:INFO: START 315: refineB1 333, 14 Thr, 315 R, 438 T, 0 F, 123 Q 2022-11-14 19:58:10,930:INFO: START 316: refineB1 334, 14 Thr, 316 R, 438 T, 0 F, 122 Q 2022-11-14 19:58:10,953:INFO: START 317: refineB1 335, 14 Thr, 317 R, 438 T, 0 F, 121 Q 2022-11-14 19:58:10,977:INFO: START 318: refineB1 336, 14 Thr, 318 R, 438 T, 0 F, 120 Q 2022-11-14 19:58:11,000:INFO: START 319: refineB1 337, 14 Thr, 319 R, 438 T, 0 F, 119 Q 2022-11-14 19:58:11,052:INFO: START 320: refineB1 338, 14 Thr, 320 R, 438 T, 0 F, 118 Q 2022-11-14 19:58:11,075:INFO: START 321: refineB1 339, 14 Thr, 321 R, 438 T, 0 F, 117 Q 2022-11-14 19:58:11,099:INFO: START 322: refineB1 340, 14 Thr, 322 R, 438 T, 0 F, 116 Q 2022-11-14 19:58:11,142:INFO: START 323: refineB1 341, 14 Thr, 323 R, 438 T, 0 F, 115 Q 2022-11-14 19:58:11,170:INFO: START 324: refineB1 342, 14 Thr, 324 R, 438 T, 0 F, 114 Q 2022-11-14 19:58:11,195:INFO: START 325: refineB1 343, 14 Thr, 325 R, 438 T, 0 F, 113 Q 2022-11-14 19:58:11,221:INFO: START 326: refineB1 344, 14 Thr, 326 R, 438 T, 0 F, 112 Q 2022-11-14 19:58:11,253:INFO: START 327: refineB1 345, 14 Thr, 327 R, 438 T, 0 F, 111 Q 2022-11-14 19:58:11,277:INFO: START 328: refineB1 346, 14 Thr, 328 R, 438 T, 0 F, 110 Q 2022-11-14 19:58:11,302:INFO: START 329: refineB1 347, 14 Thr, 329 R, 438 T, 0 F, 109 Q 2022-11-14 19:58:11,343:INFO: START 330: refineB1 348, 14 Thr, 330 R, 438 T, 0 F, 108 Q 2022-11-14 19:58:11,389:INFO: START 331: refineB1 349, 14 Thr, 331 R, 438 T, 0 F, 107 Q 2022-11-14 19:58:11,432:INFO: START 332: refineB1 350, 14 Thr, 332 R, 438 T, 0 F, 106 Q 2022-11-14 19:58:11,481:INFO: START 333: refineB1 351, 14 Thr, 333 R, 438 T, 0 F, 105 Q 2022-11-14 19:58:11,504:INFO: START 334: refineB1 352, 14 Thr, 334 R, 438 T, 0 F, 104 Q 2022-11-14 19:58:11,527:INFO: START 335: refineB1 353, 14 Thr, 335 R, 438 T, 0 F, 103 Q 2022-11-14 19:58:11,550:INFO: START 336: refineB1 354, 14 Thr, 336 R, 438 T, 0 F, 102 Q 2022-11-14 19:58:11,574:INFO: START 337: refineB1 355, 14 Thr, 337 R, 438 T, 0 F, 101 Q 2022-11-14 19:58:11,638:INFO: START 338: refineB1 356, 14 Thr, 338 R, 438 T, 0 F, 100 Q 2022-11-14 19:58:11,661:INFO: START 339: refineB1 357, 14 Thr, 339 R, 438 T, 0 F, 99 Q 2022-11-14 19:58:11,684:INFO: START 340: refineB1 358, 14 Thr, 340 R, 438 T, 0 F, 98 Q 2022-11-14 19:58:11,707:INFO: START 341: refineB1 359, 14 Thr, 341 R, 438 T, 0 F, 97 Q 2022-11-14 19:58:11,730:INFO: START 342: refineB1 360, 14 Thr, 342 R, 438 T, 0 F, 96 Q 2022-11-14 19:58:11,753:INFO: START 343: refineB1 361, 14 Thr, 343 R, 438 T, 0 F, 95 Q 2022-11-14 19:58:11,776:INFO: START 344: refineB1 362, 14 Thr, 344 R, 438 T, 0 F, 94 Q 2022-11-14 19:58:11,799:INFO: START 345: refineB1 363, 14 Thr, 345 R, 438 T, 0 F, 93 Q 2022-11-14 19:58:11,822:INFO: START 346: refineB1 364, 14 Thr, 346 R, 438 T, 0 F, 92 Q 2022-11-14 19:58:11,845:INFO: START 347: refineB1 365, 14 Thr, 347 R, 438 T, 0 F, 91 Q 2022-11-14 19:58:11,868:INFO: START 348: refineB1 366, 14 Thr, 348 R, 438 T, 0 F, 90 Q 2022-11-14 19:58:11,891:INFO: START 349: refineB1 367, 14 Thr, 349 R, 438 T, 0 F, 89 Q 2022-11-14 19:58:11,914:INFO: START 350: refineB1 368, 14 Thr, 350 R, 438 T, 0 F, 88 Q 2022-11-14 19:58:11,937:INFO: START 351: refineB1 369, 14 Thr, 351 R, 438 T, 0 F, 87 Q 2022-11-14 19:58:11,960:INFO: START 352: refineB1 370, 14 Thr, 352 R, 438 T, 0 F, 86 Q 2022-11-14 19:58:11,983:INFO: START 353: refineB1 371, 14 Thr, 353 R, 438 T, 0 F, 85 Q 2022-11-14 19:58:12,006:INFO: START 354: refineB1 372, 14 Thr, 354 R, 438 T, 0 F, 84 Q 2022-11-14 19:58:12,029:INFO: START 355: refineB1 373, 14 Thr, 355 R, 438 T, 0 F, 83 Q 2022-11-14 19:58:12,077:INFO: START 356: refineB1 374, 14 Thr, 356 R, 438 T, 0 F, 82 Q 2022-11-14 19:58:12,100:INFO: START 357: refineB1 375, 14 Thr, 357 R, 438 T, 0 F, 81 Q 2022-11-14 19:58:12,141:INFO: START 358: refineB1 376, 14 Thr, 358 R, 438 T, 0 F, 80 Q 2022-11-14 19:58:12,166:INFO: START 359: refineB1 377, 14 Thr, 359 R, 438 T, 0 F, 79 Q 2022-11-14 19:58:12,190:INFO: START 360: refineB1 378, 14 Thr, 360 R, 438 T, 0 F, 78 Q 2022-11-14 19:58:12,217:INFO: START 361: refineB1 379, 14 Thr, 361 R, 438 T, 0 F, 77 Q 2022-11-14 19:58:12,248:INFO: START 362: refineB1 380, 14 Thr, 362 R, 438 T, 0 F, 76 Q 2022-11-14 19:58:12,288:INFO: START 363: refineB1 381, 14 Thr, 363 R, 438 T, 0 F, 75 Q 2022-11-14 19:58:12,319:INFO: START 364: refineB1 382, 14 Thr, 364 R, 438 T, 0 F, 74 Q 2022-11-14 19:58:12,344:INFO: START 365: refineB1 383, 14 Thr, 365 R, 438 T, 0 F, 73 Q 2022-11-14 19:58:12,394:INFO: START 366: refineB1 384, 14 Thr, 366 R, 438 T, 0 F, 72 Q 2022-11-14 19:58:12,419:INFO: START 367: refineB1 385, 14 Thr, 367 R, 438 T, 0 F, 71 Q 2022-11-14 19:58:12,444:INFO: START 368: refineB1 386, 14 Thr, 368 R, 438 T, 0 F, 70 Q 2022-11-14 19:58:12,467:INFO: START 369: refineB1 387, 14 Thr, 369 R, 438 T, 0 F, 69 Q 2022-11-14 19:58:12,491:INFO: START 370: refineB1 388, 14 Thr, 370 R, 438 T, 0 F, 68 Q 2022-11-14 19:58:12,514:INFO: START 371: refineB1 389, 14 Thr, 371 R, 438 T, 0 F, 67 Q 2022-11-14 19:58:12,556:INFO: START 372: refineB1 390, 14 Thr, 372 R, 438 T, 0 F, 66 Q 2022-11-14 19:58:12,581:INFO: START 373: refineB1 391, 14 Thr, 373 R, 438 T, 0 F, 65 Q 2022-11-14 19:58:12,620:INFO: START 374: refineB1 392, 14 Thr, 374 R, 438 T, 0 F, 64 Q 2022-11-14 19:58:12,648:INFO: START 375: refineB1 393, 14 Thr, 375 R, 438 T, 0 F, 63 Q 2022-11-14 19:58:12,678:INFO: START 376: refineB1 394, 14 Thr, 376 R, 438 T, 0 F, 62 Q 2022-11-14 19:58:12,724:INFO: START 377: refineB1 395, 14 Thr, 377 R, 438 T, 0 F, 61 Q 2022-11-14 19:58:12,757:INFO: START 378: refineB1 396, 14 Thr, 378 R, 438 T, 0 F, 60 Q 2022-11-14 19:58:12,782:INFO: START 379: refineB1 397, 14 Thr, 379 R, 438 T, 0 F, 59 Q 2022-11-14 19:58:12,807:INFO: START 380: refineB1 398, 14 Thr, 380 R, 438 T, 0 F, 58 Q 2022-11-14 19:58:12,832:INFO: START 381: refineB1 399, 14 Thr, 381 R, 438 T, 0 F, 57 Q 2022-11-14 19:58:12,857:INFO: START 382: refineB1 400, 14 Thr, 382 R, 438 T, 0 F, 56 Q 2022-11-14 19:58:12,884:INFO: START 383: refineB1 401, 14 Thr, 383 R, 438 T, 0 F, 55 Q 2022-11-14 19:58:12,909:INFO: START 384: refineB1 402, 14 Thr, 384 R, 438 T, 0 F, 54 Q 2022-11-14 19:58:12,959:INFO: START 385: refineB1 403, 14 Thr, 385 R, 438 T, 0 F, 53 Q 2022-11-14 19:58:12,982:INFO: START 386: refineB1 404, 14 Thr, 386 R, 438 T, 0 F, 52 Q 2022-11-14 19:58:13,005:INFO: START 387: refineB1 405, 14 Thr, 387 R, 438 T, 0 F, 51 Q 2022-11-14 19:58:13,028:INFO: START 388: refineB1 406, 14 Thr, 388 R, 438 T, 0 F, 50 Q 2022-11-14 19:58:13,051:INFO: START 389: refineB1 407, 14 Thr, 389 R, 438 T, 0 F, 49 Q 2022-11-14 19:58:13,074:INFO: START 390: refineB1 408, 14 Thr, 390 R, 438 T, 0 F, 48 Q 2022-11-14 19:58:13,097:INFO: START 391: refineB1 409, 14 Thr, 391 R, 438 T, 0 F, 47 Q 2022-11-14 19:58:13,120:INFO: START 392: refineB1 410, 14 Thr, 392 R, 438 T, 0 F, 46 Q 2022-11-14 19:58:13,155:INFO: START 393: refineB1 411, 14 Thr, 393 R, 438 T, 0 F, 45 Q 2022-11-14 19:58:13,180:INFO: START 394: refineB1 412, 14 Thr, 394 R, 438 T, 0 F, 44 Q 2022-11-14 19:58:13,203:INFO: START 395: refineB1 413, 14 Thr, 395 R, 438 T, 0 F, 43 Q 2022-11-14 19:58:13,226:INFO: START 396: refineB1 414, 14 Thr, 396 R, 438 T, 0 F, 42 Q 2022-11-14 19:58:13,249:INFO: START 397: refineB1 415, 14 Thr, 397 R, 438 T, 0 F, 41 Q 2022-11-14 19:58:13,272:INFO: START 398: refineB1 416, 14 Thr, 398 R, 438 T, 0 F, 40 Q 2022-11-14 19:58:13,295:INFO: START 399: refineB1 417, 14 Thr, 399 R, 438 T, 0 F, 39 Q 2022-11-14 19:58:13,318:INFO: START 400: refineB1 418, 14 Thr, 400 R, 438 T, 0 F, 38 Q 2022-11-14 19:58:13,341:INFO: START 401: refineB1 419, 14 Thr, 401 R, 438 T, 0 F, 37 Q 2022-11-14 19:58:13,364:INFO: START 402: refineB1 420, 14 Thr, 402 R, 438 T, 0 F, 36 Q 2022-11-14 19:58:13,387:INFO: START 403: refineB1 421, 14 Thr, 403 R, 438 T, 0 F, 35 Q 2022-11-14 19:58:13,410:INFO: START 404: refineB1 422, 14 Thr, 404 R, 438 T, 0 F, 34 Q 2022-11-14 19:58:13,433:INFO: START 405: refineB1 423, 14 Thr, 405 R, 438 T, 0 F, 33 Q 2022-11-14 19:58:13,456:INFO: START 406: refineB1 424, 14 Thr, 406 R, 438 T, 0 F, 32 Q 2022-11-14 19:58:13,479:INFO: START 407: refineB1 425, 14 Thr, 407 R, 438 T, 0 F, 31 Q 2022-11-14 19:58:13,503:INFO: START 408: refineB1 426, 14 Thr, 408 R, 438 T, 0 F, 30 Q 2022-11-14 19:58:13,526:INFO: START 409: refineB1 427, 14 Thr, 409 R, 438 T, 0 F, 29 Q 2022-11-14 19:58:13,549:INFO: START 410: refineB1 428, 14 Thr, 410 R, 438 T, 0 F, 28 Q 2022-11-14 19:58:13,572:INFO: START 411: refineB1 429, 14 Thr, 411 R, 438 T, 0 F, 27 Q 2022-11-14 19:58:13,595:INFO: START 412: refineB1 430, 14 Thr, 412 R, 438 T, 0 F, 26 Q 2022-11-14 19:58:13,627:INFO: START 413: refineB1 431, 14 Thr, 413 R, 438 T, 0 F, 25 Q 2022-11-14 19:58:13,673:INFO: START 414: refineB1 432, 14 Thr, 414 R, 438 T, 0 F, 24 Q 2022-11-14 19:58:13,696:INFO: START 415: refineB1 433, 14 Thr, 415 R, 438 T, 0 F, 23 Q 2022-11-14 19:58:13,719:INFO: START 416: refineB1 434, 14 Thr, 416 R, 438 T, 0 F, 22 Q 2022-11-14 19:58:13,742:INFO: START 417: refineB1 435, 14 Thr, 417 R, 438 T, 0 F, 21 Q 2022-11-14 19:58:13,765:INFO: START 418: refineB1 436, 14 Thr, 418 R, 438 T, 0 F, 20 Q 2022-11-14 19:58:13,788:INFO: START 419: refineB1 437, 14 Thr, 419 R, 438 T, 0 F, 19 Q 2022-11-14 19:58:13,811:INFO: START 420: refineB1 438, 14 Thr, 420 R, 438 T, 0 F, 18 Q 2022-11-14 19:58:13,834:INFO: START 421: refineB1 81, 14 Thr, 421 R, 438 T, 0 F, 17 Q 2022-11-14 19:58:13,866:INFO: START 422: refineB1 173, 14 Thr, 422 R, 438 T, 0 F, 16 Q 2022-11-14 19:58:13,905:INFO: START 423: refineB1 174, 14 Thr, 423 R, 438 T, 0 F, 15 Q 2022-11-14 19:58:13,939:INFO: START 424: refineB1 82, 14 Thr, 424 R, 438 T, 0 F, 14 Q 2022-11-14 19:58:13,972:INFO: START 425: refineB1 175, 14 Thr, 425 R, 438 T, 0 F, 13 Q 2022-11-14 19:58:14,023:INFO: START 426: refineB1 176, 14 Thr, 426 R, 438 T, 0 F, 12 Q 2022-11-14 19:58:14,061:INFO: START 427: refineB1 83, 14 Thr, 427 R, 438 T, 0 F, 11 Q 2022-11-14 19:58:14,106:INFO: START 428: refineB1 177, 14 Thr, 428 R, 438 T, 0 F, 10 Q 2022-11-14 19:58:14,146:INFO: START 429: refineB1 178, 14 Thr, 429 R, 438 T, 0 F, 9 Q 2022-11-14 19:58:14,217:INFO: START 430: refineB1 179, 14 Thr, 430 R, 438 T, 0 F, 8 Q 2022-11-14 19:58:14,241:INFO: START 431: refineB1 180, 14 Thr, 431 R, 438 T, 0 F, 7 Q 2022-11-14 19:58:14,278:INFO: START 432: refineB1 84, 14 Thr, 432 R, 438 T, 0 F, 6 Q 2022-11-14 19:58:14,301:INFO: START 433: refineB1 181, 14 Thr, 433 R, 438 T, 0 F, 5 Q 2022-11-14 19:58:14,325:INFO: START 434: refineB1 182, 14 Thr, 434 R, 438 T, 0 F, 4 Q 2022-11-14 19:58:14,348:INFO: START 435: refineB1 85, 14 Thr, 435 R, 438 T, 0 F, 3 Q 2022-11-14 19:58:14,371:INFO: START 436: refineB1 183, 14 Thr, 436 R, 438 T, 0 F, 2 Q 2022-11-14 19:58:14,394:INFO: START 437: refineB1 86, 14 Thr, 437 R, 438 T, 0 F, 1 Q 2022-11-14 19:58:14,417:INFO: START 438: refineB1 184, 14 Thr, 438 R, 438 T, 0 F, 0 Q 2022-11-14 20:00:22,475:INFO: STOP 148: refineB1 67, 14 Thr, 437 R, 438 T, 1 F, 0 Q TotalTime= 0h 3.11m RunTime= 0h 3.06m CPUload=517% bionano2a 2022-11-14 20:01:31,167:INFO: STOP 147: refineB1 221, 14 Thr, 436 R, 438 T, 2 F, 0 Q TotalTime= 0h 4.26m RunTime= 0h 4.20m CPUload=475% bionano1a 2022-11-14 20:03:12,619:INFO: STOP 156: refineB1 139, 14 Thr, 435 R, 438 T, 3 F, 0 Q TotalTime= 0h 5.94m RunTime= 0h 5.85m CPUload=295% saphyr1a 2022-11-14 20:03:21,866:INFO: STOP 149: refineB1 135, 14 Thr, 434 R, 438 T, 4 F, 0 Q TotalTime= 0h 6.10m RunTime= 0h 6.02m CPUload=303% saphyr1a 2022-11-14 20:03:49,034:INFO: STOP 154: refineB1 138, 14 Thr, 433 R, 438 T, 5 F, 0 Q TotalTime= 0h 6.55m RunTime= 0h 6.49m CPUload=315% saphyr1a 2022-11-14 20:04:03,661:INFO: STOP 51: refineB1 38, 14 Thr, 432 R, 438 T, 6 F, 0 Q TotalTime= 0h 6.85m RunTime= 0h 6.66m CPUload=397% bionano2c 2022-11-14 20:04:11,693:INFO: STOP 153: refineB1 223, 14 Thr, 431 R, 438 T, 7 F, 0 Q TotalTime= 0h 6.93m RunTime= 0h 6.85m CPUload=282% saphyr1a 2022-11-14 20:04:20,694:INFO: STOP 158: refineB1 42, 14 Thr, 430 R, 438 T, 8 F, 0 Q TotalTime= 0h 7.08m RunTime= 0h 7.00m CPUload=434% saphyr1a 2022-11-14 20:04:20,707:INFO: STOP 155: refineB1 224, 14 Thr, 429 R, 438 T, 9 F, 0 Q TotalTime= 0h 7.08m RunTime= 0h 7.05m CPUload=289% saphyr1a 2022-11-14 20:04:52,996:INFO: STOP 74: refineB1 40, 14 Thr, 428 R, 438 T, 10 F, 0 Q TotalTime= 0h 7.66m RunTime= 0h 7.52m CPUload=412% saphyr1d 2022-11-14 20:04:56,726:INFO: STOP 150: refineB1 136, 14 Thr, 427 R, 438 T, 11 F, 0 Q TotalTime= 0h 7.68m RunTime= 0h 7.61m CPUload=317% saphyr1a 2022-11-14 20:05:10,096:INFO: STOP 162: refineB1 141, 14 Thr, 426 R, 438 T, 12 F, 0 Q TotalTime= 0h 7.90m RunTime= 0h 7.85m CPUload=302% saphyr1a 2022-11-14 20:05:19,058:INFO: STOP 160: refineB1 140, 14 Thr, 425 R, 438 T, 13 F, 0 Q TotalTime= 0h 8.05m RunTime= 0h 7.95m CPUload=289% saphyr1a 2022-11-14 20:05:27,949:INFO: STOP 164: refineB1 142, 14 Thr, 424 R, 438 T, 14 F, 0 Q TotalTime= 0h 8.19m RunTime= 0h 3.90m CPUload=442% bionano1a 2022-11-14 20:05:32,432:INFO: STOP 157: refineB1 68, 14 Thr, 423 R, 438 T, 15 F, 0 Q TotalTime= 0h 8.27m RunTime= 0h 8.17m CPUload=334% saphyr1a 2022-11-14 20:05:50,150:INFO: STOP 163: refineB1 227, 14 Thr, 422 R, 438 T, 16 F, 0 Q TotalTime= 0h 8.56m RunTime= 0h 5.44m CPUload=409% bionano2a 2022-11-14 20:05:55,581:INFO: STOP 161: refineB1 226, 14 Thr, 421 R, 438 T, 17 F, 0 Q TotalTime= 0h 8.66m RunTime= 0h 8.60m CPUload=303% saphyr1a 2022-11-14 20:06:19,698:INFO: STOP 50: refineB1 89, 14 Thr, 420 R, 438 T, 18 F, 0 Q TotalTime= 0h 9.12m RunTime= 0h 9.02m CPUload=199% bionano2d 2022-11-14 20:06:27,481:INFO: STOP 159: refineB1 225, 14 Thr, 419 R, 438 T, 19 F, 0 Q TotalTime= 0h 9.19m RunTime= 0h 9.16m CPUload=307% saphyr1a 2022-11-14 20:06:37,139:INFO: STOP 64: refineB1 49, 14 Thr, 418 R, 438 T, 20 F, 0 Q TotalTime= 0h 9.40m RunTime= 0h 9.28m CPUload=305% saphyr1b 2022-11-14 20:06:46,143:INFO: STOP 39: refineB1 36, 14 Thr, 417 R, 438 T, 21 F, 0 Q TotalTime= 0h 9.57m RunTime= 0h 9.46m CPUload=305% bionano1b 2022-11-14 20:06:49,411:INFO: STOP 152: refineB1 137, 14 Thr, 416 R, 438 T, 22 F, 0 Q TotalTime= 0h 9.56m RunTime= 0h 9.47m CPUload=319% saphyr1a 2022-11-14 20:07:07,998:INFO: STOP 31: refineB1 31, 28 Thr, 415 R, 438 T, 23 F, 0 Q TotalTime= 0h 9.94m RunTime= 0h 9.78m CPUload=541% saphyr1b 2022-11-14 20:07:37,781:INFO: STOP 98: refineB1 114, 14 Thr, 414 R, 438 T, 24 F, 0 Q TotalTime= 0h 10.39m RunTime= 0h 10.35m CPUload=222% bionano1b 2022-11-14 20:07:45,977:INFO: STOP 151: refineB1 222, 14 Thr, 413 R, 438 T, 25 F, 0 Q TotalTime= 0h 10.50m RunTime= 0h 10.42m CPUload=306% saphyr1a 2022-11-14 20:07:47,009:INFO: STOP 43: refineB1 37, 14 Thr, 412 R, 438 T, 26 F, 0 Q TotalTime= 0h 10.59m RunTime= 0h 10.40m CPUload=439% bionano2c 2022-11-14 20:07:59,056:INFO: STOP 136: refineB1 66, 14 Thr, 411 R, 438 T, 27 F, 0 Q TotalTime= 0h 10.73m RunTime= 0h 10.64m CPUload=224% bionano1d 2022-11-14 20:08:03,906:INFO: STOP 83: refineB1 61, 14 Thr, 410 R, 438 T, 28 F, 0 Q TotalTime= 0h 10.83m RunTime= 0h 10.75m CPUload=210% saphyr1d 2022-11-14 20:08:04,349:INFO: STOP 34: refineB1 34, 28 Thr, 409 R, 438 T, 29 F, 0 Q TotalTime= 0h 10.88m RunTime= 0h 10.77m CPUload=511% saphyr1d 2022-11-14 20:08:08,547:INFO: STOP 45: refineB1 47, 14 Thr, 408 R, 438 T, 30 F, 0 Q TotalTime= 0h 10.95m RunTime= 0h 10.75m CPUload=342% bionano1c 2022-11-14 20:08:13,493:INFO: STOP 80: refineB1 190, 14 Thr, 407 R, 438 T, 31 F, 0 Q TotalTime= 0h 11.00m RunTime= 0h 10.96m CPUload=217% bionano1b 2022-11-14 20:08:17,570:INFO: STOP 101: refineB1 199, 14 Thr, 406 R, 438 T, 32 F, 0 Q TotalTime= 0h 11.05m RunTime= 0h 11.04m CPUload=182% bionano2d 2022-11-14 20:08:22,013:INFO: STOP 81: refineB1 107, 14 Thr, 405 R, 438 T, 33 F, 0 Q TotalTime= 0h 11.14m RunTime= 0h 11.05m CPUload=174% saphyr1c 2022-11-14 20:08:34,130:INFO: STOP 145: refineB1 50, 14 Thr, 404 R, 438 T, 34 F, 0 Q TotalTime= 0h 11.31m RunTime= 0h 10.83m CPUload=316% bionano1c 2022-11-14 20:08:34,226:INFO: STOP 134: refineB1 129, 14 Thr, 403 R, 438 T, 35 F, 0 Q TotalTime= 0h 11.31m RunTime= 0h 11.02m CPUload=171% bionano1c 2022-11-14 20:08:38,880:INFO: STOP 90: refineB1 195, 14 Thr, 402 R, 438 T, 36 F, 0 Q TotalTime= 0h 11.41m RunTime= 0h 11.33m CPUload=105% saphyr1c 2022-11-14 20:08:47,116:INFO: STOP 110: refineB1 203, 14 Thr, 401 R, 438 T, 37 F, 0 Q TotalTime= 0h 11.54m RunTime= 0h 11.53m CPUload=186% bionano2d 2022-11-14 20:08:51,229:INFO: STOP 119: refineB1 208, 14 Thr, 400 R, 438 T, 38 F, 0 Q TotalTime= 0h 11.60m RunTime= 0h 11.53m CPUload=198% bionano2d 2022-11-14 20:08:55,618:INFO: STOP 97: refineB1 62, 14 Thr, 399 R, 438 T, 39 F, 0 Q TotalTime= 0h 11.69m RunTime= 0h 11.58m CPUload=233% bionano2b 2022-11-14 20:09:03,714:INFO: STOP 127: refineB1 65, 14 Thr, 398 R, 438 T, 40 F, 0 Q TotalTime= 0h 11.81m RunTime= 0h 11.67m CPUload=201% saphyr1d 2022-11-14 20:09:12,849:INFO: STOP 36: refineB1 35, 14 Thr, 397 R, 438 T, 41 F, 0 Q TotalTime= 0h 12.02m RunTime= 0h 11.88m CPUload=481% bionano1d 2022-11-14 20:09:15,924:INFO: STOP 178: refineB1 149, 14 Thr, 396 R, 438 T, 42 F, 0 Q TotalTime= 0h 11.99m RunTime= 0h 3.40m CPUload=611% bionano2a 2022-11-14 20:09:16,231:INFO: STOP 126: refineB1 126, 14 Thr, 395 R, 438 T, 43 F, 0 Q TotalTime= 0h 12.02m RunTime= 0h 11.86m CPUload=162% saphyr1b 2022-11-14 20:09:16,748:INFO: STOP 66: refineB1 100, 14 Thr, 394 R, 438 T, 44 F, 0 Q TotalTime= 0h 12.06m RunTime= 0h 11.99m CPUload=210% bionano2d 2022-11-14 20:09:20,586:INFO: STOP 102: refineB1 116, 14 Thr, 393 R, 438 T, 45 F, 0 Q TotalTime= 0h 12.10m RunTime= 0h 12.09m CPUload=128% saphyr1d 2022-11-14 20:09:24,341:INFO: STOP 143: refineB1 133, 14 Thr, 392 R, 438 T, 46 F, 0 Q TotalTime= 0h 12.15m RunTime= 0h 11.70m CPUload=200% bionano1c 2022-11-14 20:09:33,280:INFO: STOP 55: refineB1 58, 14 Thr, 391 R, 438 T, 47 F, 0 Q TotalTime= 0h 12.34m RunTime= 0h 12.23m CPUload=224% saphyr1c 2022-11-14 20:09:36,948:INFO: STOP 107: refineB1 201, 14 Thr, 390 R, 438 T, 48 F, 0 Q TotalTime= 0h 12.37m RunTime= 0h 12.30m CPUload=219% bionano1b 2022-11-14 20:09:37,296:INFO: STOP 62: refineB1 59, 14 Thr, 389 R, 438 T, 49 F, 0 Q TotalTime= 0h 12.40m RunTime= 0h 12.31m CPUload=247% bionano1b 2022-11-14 20:09:37,403:INFO: STOP 48: refineB1 87, 14 Thr, 388 R, 438 T, 50 F, 0 Q TotalTime= 0h 12.42m RunTime= 0h 12.29m CPUload=167% saphyr1b 2022-11-14 20:09:41,885:INFO: STOP 4: refineB1 4, 56 Thr, 387 R, 438 T, 51 F, 0 Q TotalTime= 0h 12.52m RunTime= 0h 12.46m CPUload=2316% bionano2a 2022-11-14 20:09:41,887:INFO: STOP 3: refineB1 3, 56 Thr, 386 R, 438 T, 52 F, 0 Q TotalTime= 0h 12.52m RunTime= 0h 12.44m CPUload=2463% bionano2a 2022-11-14 20:09:45,471:INFO: STOP 58: refineB1 94, 14 Thr, 385 R, 438 T, 53 F, 0 Q TotalTime= 0h 12.54m RunTime= 0h 12.48m CPUload=198% bionano2d 2022-11-14 20:09:48,771:INFO: STOP 167: refineB1 228, 14 Thr, 384 R, 438 T, 54 F, 0 Q TotalTime= 0h 12.54m RunTime= 0h 5.99m CPUload=262% saphyr1a 2022-11-14 20:09:49,570:INFO: STOP 46: refineB1 48, 14 Thr, 383 R, 438 T, 55 F, 0 Q TotalTime= 0h 12.63m RunTime= 0h 12.54m CPUload=256% bionano1b 2022-11-14 20:09:57,634:INFO: STOP 38: refineB1 53, 14 Thr, 382 R, 438 T, 56 F, 0 Q TotalTime= 0h 12.77m RunTime= 0h 12.61m CPUload=256% bionano1c 2022-11-14 20:10:01,057:INFO: STOP 116: refineB1 206, 14 Thr, 381 R, 438 T, 57 F, 0 Q TotalTime= 0h 12.77m RunTime= 0h 12.66m CPUload=226% bionano1b 2022-11-14 20:10:01,614:INFO: STOP 40: refineB1 54, 14 Thr, 380 R, 438 T, 58 F, 0 Q TotalTime= 0h 12.83m RunTime= 0h 12.69m CPUload=258% saphyr1b 2022-11-14 20:10:05,479:INFO: STOP 60: refineB1 96, 14 Thr, 379 R, 438 T, 59 F, 0 Q TotalTime= 0h 12.87m RunTime= 0h 12.81m CPUload=171% bionano1d 2022-11-14 20:10:08,928:INFO: STOP 128: refineB1 127, 14 Thr, 378 R, 438 T, 60 F, 0 Q TotalTime= 0h 12.90m RunTime= 0h 12.73m CPUload=188% bionano1c 2022-11-14 20:10:13,022:INFO: STOP 111: refineB1 120, 14 Thr, 377 R, 438 T, 61 F, 0 Q TotalTime= 0h 12.97m RunTime= 0h 12.89m CPUload=184% saphyr1d 2022-11-14 20:10:13,297:INFO: STOP 73: refineB1 103, 14 Thr, 376 R, 438 T, 62 F, 0 Q TotalTime= 0h 13.00m RunTime= 0h 12.87m CPUload=194% saphyr1b 2022-11-14 20:10:17,154:INFO: STOP 85: refineB1 108, 14 Thr, 375 R, 438 T, 63 F, 0 Q TotalTime= 0h 13.05m RunTime= 0h 12.93m CPUload=199% bionano1c 2022-11-14 20:10:17,460:INFO: STOP 33: refineB1 33, 28 Thr, 374 R, 438 T, 64 F, 0 Q TotalTime= 0h 13.10m RunTime= 0h 12.99m CPUload=566% saphyr1c 2022-11-14 20:10:20,918:INFO: STOP 105: refineB1 63, 14 Thr, 373 R, 438 T, 65 F, 0 Q TotalTime= 0h 13.11m RunTime= 0h 12.99m CPUload=223% bionano1d 2022-11-14 20:10:25,237:INFO: STOP 42: refineB1 55, 14 Thr, 372 R, 438 T, 66 F, 0 Q TotalTime= 0h 13.22m RunTime= 0h 13.12m CPUload=286% bionano1d 2022-11-14 20:10:28,443:INFO: STOP 142: refineB1 132, 14 Thr, 371 R, 438 T, 67 F, 0 Q TotalTime= 0h 13.21m RunTime= 0h 12.92m CPUload=156% bionano1d 2022-11-14 20:10:28,917:INFO: STOP 76: refineB1 104, 14 Thr, 370 R, 438 T, 68 F, 0 Q TotalTime= 0h 13.25m RunTime= 0h 13.12m CPUload=200% bionano1c 2022-11-14 20:10:32,681:INFO: STOP 92: refineB1 41, 14 Thr, 369 R, 438 T, 69 F, 0 Q TotalTime= 0h 13.31m RunTime= 0h 13.27m CPUload=269% bionano2d 2022-11-14 20:10:36,059:INFO: STOP 176: refineB1 232, 14 Thr, 368 R, 438 T, 70 F, 0 Q TotalTime= 0h 13.32m RunTime= 0h 5.09m CPUload=459% bionano1a 2022-11-14 20:10:40,262:INFO: STOP 113: refineB1 64, 14 Thr, 367 R, 438 T, 71 F, 0 Q TotalTime= 0h 13.42m RunTime= 0h 13.33m CPUload=206% bionano2c 2022-11-14 20:10:44,223:INFO: STOP 93: refineB1 112, 14 Thr, 366 R, 438 T, 72 F, 0 Q TotalTime= 0h 13.50m RunTime= 0h 13.40m CPUload=166% saphyr1d 2022-11-14 20:10:48,418:INFO: STOP 29: refineB1 29, 28 Thr, 365 R, 438 T, 73 F, 0 Q TotalTime= 0h 13.62m RunTime= 0h 13.48m CPUload=581% bionano1d 2022-11-14 20:10:51,595:INFO: STOP 137: refineB1 130, 14 Thr, 364 R, 438 T, 74 F, 0 Q TotalTime= 0h 13.60m RunTime= 0h 13.26m CPUload=182% saphyr1c 2022-11-14 20:10:52,217:INFO: STOP 32: refineB1 32, 28 Thr, 363 R, 438 T, 75 F, 0 Q TotalTime= 0h 13.68m RunTime= 0h 13.56m CPUload=533% bionano2b 2022-11-14 20:10:55,593:INFO: STOP 108: refineB1 119, 14 Thr, 362 R, 438 T, 76 F, 0 Q TotalTime= 0h 13.68m RunTime= 0h 13.55m CPUload=180% saphyr1c 2022-11-14 20:10:55,941:INFO: STOP 52: refineB1 90, 14 Thr, 361 R, 438 T, 77 F, 0 Q TotalTime= 0h 13.72m RunTime= 0h 13.63m CPUload=182% bionano1d 2022-11-14 20:10:55,985:INFO: STOP 37: refineB1 45, 14 Thr, 360 R, 438 T, 78 F, 0 Q TotalTime= 0h 13.74m RunTime= 0h 13.59m CPUload=334% bionano2c 2022-11-14 20:10:59,056:INFO: STOP 171: refineB1 230, 14 Thr, 359 R, 438 T, 79 F, 0 Q TotalTime= 0h 13.71m RunTime= 0h 6.59m CPUload=272% saphyr1a 2022-11-14 20:11:02,915:INFO: STOP 140: refineB1 131, 14 Thr, 358 R, 438 T, 80 F, 0 Q TotalTime= 0h 13.79m RunTime= 0h 13.50m CPUload=179% saphyr1c 2022-11-14 20:11:03,243:INFO: STOP 87: refineB1 109, 14 Thr, 357 R, 438 T, 81 F, 0 Q TotalTime= 0h 13.82m RunTime= 0h 13.77m CPUload=182% bionano1d 2022-11-14 20:11:03,256:INFO: STOP 84: refineB1 192, 14 Thr, 356 R, 438 T, 82 F, 0 Q TotalTime= 0h 13.82m RunTime= 0h 13.81m CPUload=190% bionano2d 2022-11-14 20:11:10,271:INFO: STOP 174: refineB1 147, 14 Thr, 355 R, 438 T, 83 F, 0 Q TotalTime= 0h 13.89m RunTime= 0h 5.95m CPUload=277% saphyr1a 2022-11-14 20:11:10,967:INFO: STOP 30: refineB1 30, 28 Thr, 354 R, 438 T, 84 F, 0 Q TotalTime= 0h 13.99m RunTime= 0h 13.85m CPUload=521% bionano2c 2022-11-14 20:11:14,015:INFO: STOP 170: refineB1 145, 14 Thr, 353 R, 438 T, 85 F, 0 Q TotalTime= 0h 13.96m RunTime= 0h 6.84m CPUload=264% saphyr1a 2022-11-14 20:11:14,312:INFO: STOP 104: refineB1 117, 14 Thr, 352 R, 438 T, 86 F, 0 Q TotalTime= 0h 14.00m RunTime= 0h 13.89m CPUload=187% bionano2c 2022-11-14 20:11:14,650:INFO: STOP 41: refineB1 46, 14 Thr, 351 R, 438 T, 87 F, 0 Q TotalTime= 0h 14.05m RunTime= 0h 14.02m CPUload=244% bionano2d 2022-11-14 20:11:18,271:INFO: STOP 56: refineB1 92, 14 Thr, 350 R, 438 T, 88 F, 0 Q TotalTime= 0h 14.09m RunTime= 0h 13.89m CPUload=213% saphyr1b 2022-11-14 20:11:22,040:INFO: STOP 25: refineB1 25, 28 Thr, 349 R, 438 T, 89 F, 0 Q TotalTime= 0h 14.18m RunTime= 0h 14.01m CPUload=574% saphyr1b 2022-11-14 20:11:24,141:INFO: STOP 260: refineB1 278, 14 Thr, 348 R, 438 T, 90 F, 0 Q TotalTime= 0h 13.25m RunTime= 0h 0.78m CPUload=1002% bionano1a 2022-11-14 20:11:25,449:INFO: STOP 79: refineB1 106, 14 Thr, 347 R, 438 T, 91 F, 0 Q TotalTime= 0h 14.20m RunTime= 0h 14.15m CPUload=156% bionano2b 2022-11-14 20:11:25,556:INFO: STOP 63: refineB1 98, 14 Thr, 346 R, 438 T, 92 F, 0 Q TotalTime= 0h 14.20m RunTime= 0h 14.11m CPUload=174% saphyr1c 2022-11-14 20:11:28,692:INFO: STOP 166: refineB1 69, 14 Thr, 345 R, 438 T, 93 F, 0 Q TotalTime= 0h 14.21m RunTime= 0h 8.10m CPUload=316% saphyr1a 2022-11-14 20:11:28,925:INFO: STOP 112: refineB1 204, 14 Thr, 344 R, 438 T, 94 F, 0 Q TotalTime= 0h 14.24m RunTime= 0h 14.06m CPUload=152% bionano1c 2022-11-14 20:11:32,439:INFO: STOP 175: refineB1 70, 14 Thr, 343 R, 438 T, 95 F, 0 Q TotalTime= 0h 14.26m RunTime= 0h 6.20m CPUload=306% saphyr1a 2022-11-14 20:11:32,809:INFO: STOP 89: refineB1 110, 14 Thr, 342 R, 438 T, 96 F, 0 Q TotalTime= 0h 14.31m RunTime= 0h 14.26m CPUload=232% bionano1b 2022-11-14 20:11:33,287:INFO: STOP 2: refineB1 2, 56 Thr, 341 R, 438 T, 97 F, 0 Q TotalTime= 0h 14.38m RunTime= 0h 14.33m CPUload=2331% bionano1a 2022-11-14 20:11:40,435:INFO: STOP 1: refineB1 1, 56 Thr, 340 R, 438 T, 98 F, 0 Q TotalTime= 0h 14.50m RunTime= 0h 14.44m CPUload=2464% bionano1a 2022-11-14 20:11:47,254:INFO: STOP 54: refineB1 39, 14 Thr, 339 R, 438 T, 99 F, 0 Q TotalTime= 0h 14.57m RunTime= 0h 14.48m CPUload=312% bionano1b 2022-11-14 20:11:54,011:INFO: STOP 124: refineB1 211, 14 Thr, 338 R, 438 T, 100 F, 0 Q TotalTime= 0h 14.65m RunTime= 0h 14.60m CPUload=136% bionano1d 2022-11-14 20:11:57,479:INFO: STOP 138: refineB1 217, 14 Thr, 337 R, 438 T, 101 F, 0 Q TotalTime= 0h 14.70m RunTime= 0h 14.36m CPUload=162% bionano1c 2022-11-14 20:11:57,744:INFO: STOP 86: refineB1 193, 14 Thr, 336 R, 438 T, 102 F, 0 Q TotalTime= 0h 14.73m RunTime= 0h 14.53m CPUload=136% bionano2c 2022-11-14 20:12:11,854:INFO: STOP 82: refineB1 191, 14 Thr, 335 R, 438 T, 103 F, 0 Q TotalTime= 0h 14.97m RunTime= 0h 14.85m CPUload=155% saphyr1b 2022-11-14 20:12:11,877:INFO: STOP 75: refineB1 188, 14 Thr, 334 R, 438 T, 104 F, 0 Q TotalTime= 0h 14.97m RunTime= 0h 14.97m CPUload=203% bionano2d 2022-11-14 20:12:15,002:INFO: STOP 173: refineB1 231, 14 Thr, 333 R, 438 T, 105 F, 0 Q TotalTime= 0h 14.97m RunTime= 0h 7.27m CPUload=286% saphyr1a 2022-11-14 20:12:15,466:INFO: STOP 57: refineB1 93, 14 Thr, 332 R, 438 T, 106 F, 0 Q TotalTime= 0h 15.04m RunTime= 0h 14.93m CPUload=162% saphyr1d 2022-11-14 20:12:21,987:INFO: STOP 169: refineB1 229, 14 Thr, 331 R, 438 T, 107 F, 0 Q TotalTime= 0h 15.09m RunTime= 0h 8.18m CPUload=310% saphyr1a 2022-11-14 20:12:22,451:INFO: STOP 47: refineB1 57, 14 Thr, 330 R, 438 T, 108 F, 0 Q TotalTime= 0h 15.18m RunTime= 0h 15.07m CPUload=232% saphyr1c 2022-11-14 20:12:29,210:INFO: STOP 96: refineB1 197, 14 Thr, 329 R, 438 T, 109 F, 0 Q TotalTime= 0h 15.25m RunTime= 0h 15.24m CPUload=146% bionano1d 2022-11-14 20:12:32,826:INFO: STOP 94: refineB1 196, 14 Thr, 328 R, 438 T, 110 F, 0 Q TotalTime= 0h 15.31m RunTime= 0h 15.19m CPUload=163% bionano1c 2022-11-14 20:12:39,522:INFO: STOP 131: refineB1 213, 14 Thr, 327 R, 438 T, 111 F, 0 Q TotalTime= 0h 15.40m RunTime= 0h 15.35m CPUload=149% bionano1d 2022-11-14 20:12:43,140:INFO: STOP 91: refineB1 111, 14 Thr, 326 R, 438 T, 112 F, 0 Q TotalTime= 0h 15.48m RunTime= 0h 15.39m CPUload=164% saphyr1b 2022-11-14 20:12:49,752:INFO: STOP 141: refineB1 219, 14 Thr, 325 R, 438 T, 113 F, 0 Q TotalTime= 0h 15.57m RunTime= 0h 15.23m CPUload=180% bionano1c 2022-11-14 20:12:54,422:INFO: STOP 72: refineB1 187, 14 Thr, 324 R, 438 T, 114 F, 0 Q TotalTime= 0h 15.68m RunTime= 0h 15.63m CPUload=152% saphyr1c 2022-11-14 20:13:00,975:INFO: STOP 139: refineB1 218, 14 Thr, 323 R, 438 T, 115 F, 0 Q TotalTime= 0h 15.76m RunTime= 0h 15.65m CPUload=161% bionano1d 2022-11-14 20:13:04,394:INFO: STOP 165: refineB1 143, 14 Thr, 322 R, 438 T, 116 F, 0 Q TotalTime= 0h 15.80m RunTime= 0h 9.86m CPUload=335% saphyr1a 2022-11-14 20:13:04,396:INFO: STOP 146: refineB1 134, 14 Thr, 321 R, 438 T, 117 F, 0 Q TotalTime= 0h 15.81m RunTime= 0h 15.46m CPUload=204% bionano1d 2022-11-14 20:13:08,003:INFO: STOP 78: refineB1 189, 14 Thr, 320 R, 438 T, 118 F, 0 Q TotalTime= 0h 15.90m RunTime= 0h 15.82m CPUload=163% bionano1d 2022-11-14 20:13:14,503:INFO: STOP 133: refineB1 215, 14 Thr, 319 R, 438 T, 119 F, 0 Q TotalTime= 0h 15.99m RunTime= 0h 15.95m CPUload=141% saphyr1d 2022-11-14 20:13:14,789:INFO: STOP 59: refineB1 95, 14 Thr, 318 R, 438 T, 120 F, 0 Q TotalTime= 0h 16.03m RunTime= 0h 15.89m CPUload=181% bionano2c 2022-11-14 20:13:18,074:INFO: STOP 69: refineB1 101, 14 Thr, 317 R, 438 T, 121 F, 0 Q TotalTime= 0h 16.08m RunTime= 0h 15.96m CPUload=191% bionano1d 2022-11-14 20:13:21,473:INFO: STOP 35: refineB1 44, 14 Thr, 316 R, 438 T, 122 F, 0 Q TotalTime= 0h 16.16m RunTime= 0h 16.11m CPUload=254% bionano2d 2022-11-14 20:13:24,570:INFO: STOP 118: refineB1 207, 14 Thr, 315 R, 438 T, 123 F, 0 Q TotalTime= 0h 16.16m RunTime= 0h 16.01m CPUload=159% saphyr1b 2022-11-14 20:13:27,731:INFO: STOP 179: refineB1 233, 14 Thr, 314 R, 438 T, 124 F, 0 Q TotalTime= 0h 16.18m RunTime= 0h 7.50m CPUload=280% saphyr1a 2022-11-14 20:13:31,128:INFO: STOP 122: refineB1 210, 14 Thr, 313 R, 438 T, 125 F, 0 Q TotalTime= 0h 16.27m RunTime= 0h 16.00m CPUload=137% bionano2c 2022-11-14 20:13:31,130:INFO: STOP 121: refineB1 209, 14 Thr, 312 R, 438 T, 126 F, 0 Q TotalTime= 0h 16.27m RunTime= 0h 16.13m CPUload=193% bionano1c 2022-11-14 20:13:34,278:INFO: STOP 181: refineB1 51, 14 Thr, 311 R, 438 T, 127 F, 0 Q TotalTime= 0h 16.29m RunTime= 0h 7.03m CPUload=334% saphyr1a 2022-11-14 20:13:34,576:INFO: STOP 61: refineB1 97, 14 Thr, 310 R, 438 T, 128 F, 0 Q TotalTime= 0h 16.36m RunTime= 0h 16.22m CPUload=164% bionano2b 2022-11-14 20:13:37,654:INFO: STOP 120: refineB1 123, 14 Thr, 309 R, 438 T, 129 F, 0 Q TotalTime= 0h 16.38m RunTime= 0h 16.27m CPUload=227% saphyr1d 2022-11-14 20:13:37,677:INFO: STOP 114: refineB1 121, 14 Thr, 308 R, 438 T, 130 F, 0 Q TotalTime= 0h 16.38m RunTime= 0h 16.25m CPUload=247% bionano1d 2022-11-14 20:13:37,752:INFO: STOP 77: refineB1 105, 14 Thr, 307 R, 438 T, 131 F, 0 Q TotalTime= 0h 16.40m RunTime= 0h 16.25m CPUload=200% bionano2c 2022-11-14 20:13:37,775:INFO: STOP 68: refineB1 60, 14 Thr, 306 R, 438 T, 132 F, 0 Q TotalTime= 0h 16.41m RunTime= 0h 16.22m CPUload=260% bionano2c 2022-11-14 20:13:40,770:INFO: STOP 177: refineB1 148, 14 Thr, 305 R, 438 T, 133 F, 0 Q TotalTime= 0h 16.40m RunTime= 0h 8.15m CPUload=312% saphyr1a 2022-11-14 20:13:44,249:INFO: STOP 27: refineB1 27, 28 Thr, 304 R, 438 T, 134 F, 0 Q TotalTime= 0h 16.55m RunTime= 0h 16.41m CPUload=550% saphyr1d 2022-11-14 20:13:47,302:INFO: STOP 103: refineB1 200, 14 Thr, 303 R, 438 T, 135 F, 0 Q TotalTime= 0h 16.55m RunTime= 0h 16.41m CPUload=176% bionano1c 2022-11-14 20:13:50,576:INFO: STOP 49: refineB1 88, 14 Thr, 302 R, 438 T, 136 F, 0 Q TotalTime= 0h 16.64m RunTime= 0h 16.55m CPUload=204% saphyr1d 2022-11-14 20:13:56,903:INFO: STOP 67: refineB1 185, 14 Thr, 301 R, 438 T, 137 F, 0 Q TotalTime= 0h 16.73m RunTime= 0h 16.64m CPUload=183% bionano1c 2022-11-14 20:14:04,104:INFO: STOP 123: refineB1 124, 14 Thr, 300 R, 438 T, 138 F, 0 Q TotalTime= 0h 16.82m RunTime= 0h 16.53m CPUload=162% bionano2b 2022-11-14 20:14:17,786:INFO: STOP 71: refineB1 102, 14 Thr, 299 R, 438 T, 139 F, 0 Q TotalTime= 0h 17.07m RunTime= 0h 17.00m CPUload=246% bionano1b 2022-11-14 20:14:17,820:INFO: STOP 44: refineB1 56, 14 Thr, 298 R, 438 T, 140 F, 0 Q TotalTime= 0h 17.10m RunTime= 0h 17.00m CPUload=228% bionano2b 2022-11-14 20:14:20,812:INFO: STOP 129: refineB1 212, 14 Thr, 297 R, 438 T, 141 F, 0 Q TotalTime= 0h 17.09m RunTime= 0h 16.84m CPUload=152% bionano2c 2022-11-14 20:14:33,469:INFO: STOP 125: refineB1 125, 14 Thr, 296 R, 438 T, 142 F, 0 Q TotalTime= 0h 17.31m RunTime= 0h 16.98m CPUload=213% saphyr1c 2022-11-14 20:14:44,885:INFO: STOP 271: refineB1 289, 14 Thr, 295 R, 438 T, 143 F, 0 Q TotalTime= 0h 16.59m RunTime= 0h 3.71m CPUload=273% saphyr1a 2022-11-14 20:14:51,933:INFO: STOP 188: refineB1 236, 14 Thr, 294 R, 438 T, 144 F, 0 Q TotalTime= 0h 17.58m RunTime= 0h 7.11m CPUload=277% saphyr1a 2022-11-14 20:14:55,163:INFO: STOP 117: refineB1 122, 14 Thr, 293 R, 438 T, 145 F, 0 Q TotalTime= 0h 17.67m RunTime= 0h 17.55m CPUload=186% saphyr1c 2022-11-14 20:15:18,684:INFO: STOP 279: refineB1 297, 14 Thr, 292 R, 438 T, 146 F, 0 Q TotalTime= 0h 17.15m RunTime= 0h 4.06m CPUload=248% saphyr1a 2022-11-14 20:15:29,019:INFO: STOP 65: refineB1 99, 14 Thr, 291 R, 438 T, 147 F, 0 Q TotalTime= 0h 18.26m RunTime= 0h 18.22m CPUload=211% saphyr1d 2022-11-14 20:15:32,623:INFO: STOP 208: refineB1 75, 14 Thr, 290 R, 438 T, 148 F, 0 Q TotalTime= 0h 17.83m RunTime= 0h 6.22m CPUload=252% bionano2a 2022-11-14 20:15:32,857:INFO: STOP 184: refineB1 234, 14 Thr, 289 R, 438 T, 149 F, 0 Q TotalTime= 0h 18.27m RunTime= 0h 8.71m CPUload=305% saphyr1a 2022-11-14 20:15:32,911:INFO: STOP 144: refineB1 220, 14 Thr, 288 R, 438 T, 150 F, 0 Q TotalTime= 0h 18.29m RunTime= 0h 17.91m CPUload=159% bionano1d 2022-11-14 20:15:32,924:INFO: STOP 132: refineB1 214, 14 Thr, 287 R, 438 T, 151 F, 0 Q TotalTime= 0h 18.29m RunTime= 0h 18.06m CPUload=154% saphyr1c 2022-11-14 20:15:34,964:INFO: STOP 275: refineB1 293, 14 Thr, 286 R, 438 T, 152 F, 0 Q TotalTime= 0h 17.42m RunTime= 0h 4.38m CPUload=258% saphyr1a 2022-11-14 20:15:38,917:INFO: STOP 168: refineB1 144, 14 Thr, 285 R, 438 T, 153 F, 0 Q TotalTime= 0h 18.38m RunTime= 0h 11.56m CPUload=157% bionano2c 2022-11-14 20:15:39,014:INFO: STOP 70: refineB1 186, 14 Thr, 284 R, 438 T, 154 F, 0 Q TotalTime= 0h 18.43m RunTime= 0h 18.41m CPUload=154% bionano2b 2022-11-14 20:15:41,912:INFO: STOP 130: refineB1 128, 14 Thr, 283 R, 438 T, 155 F, 0 Q TotalTime= 0h 18.44m RunTime= 0h 18.06m CPUload=192% bionano2b 2022-11-14 20:15:42,008:INFO: STOP 26: refineB1 26, 28 Thr, 282 R, 438 T, 156 F, 0 Q TotalTime= 0h 18.51m RunTime= 0h 18.40m CPUload=622% bionano2b 2022-11-14 20:15:44,212:INFO: STOP 244: refineB1 262, 14 Thr, 281 R, 438 T, 157 F, 0 Q TotalTime= 0h 17.60m RunTime= 0h 5.89m CPUload=315% saphyr1a 2022-11-14 20:15:44,875:INFO: STOP 109: refineB1 202, 14 Thr, 280 R, 438 T, 158 F, 0 Q TotalTime= 0h 18.50m RunTime= 0h 18.50m CPUload=147% saphyr1b 2022-11-14 20:15:47,841:INFO: STOP 95: refineB1 113, 14 Thr, 279 R, 438 T, 159 F, 0 Q TotalTime= 0h 18.56m RunTime= 0h 18.51m CPUload=209% bionano2c 2022-11-14 20:15:50,130:INFO: STOP 238: refineB1 43, 14 Thr, 278 R, 438 T, 160 F, 0 Q TotalTime= 0h 17.70m RunTime= 0h 6.13m CPUload=378% bionano2a 2022-11-14 20:15:50,783:INFO: STOP 28: refineB1 28, 28 Thr, 277 R, 438 T, 161 F, 0 Q TotalTime= 0h 18.66m RunTime= 0h 18.61m CPUload=461% bionano2d 2022-11-14 20:15:52,989:INFO: STOP 243: refineB1 261, 14 Thr, 276 R, 438 T, 162 F, 0 Q TotalTime= 0h 17.74m RunTime= 0h 6.05m CPUload=191% bionano1b 2022-11-14 20:15:53,621:INFO: STOP 115: refineB1 205, 14 Thr, 275 R, 438 T, 163 F, 0 Q TotalTime= 0h 18.65m RunTime= 0h 18.47m CPUload=145% bionano2b 2022-11-14 20:15:53,622:INFO: STOP 106: refineB1 118, 14 Thr, 274 R, 438 T, 164 F, 0 Q TotalTime= 0h 18.65m RunTime= 0h 18.56m CPUload=202% bionano2b 2022-11-14 20:15:58,720:INFO: STOP 246: refineB1 264, 14 Thr, 273 R, 438 T, 165 F, 0 Q TotalTime= 0h 17.84m RunTime= 0h 6.00m CPUload=183% bionano1b 2022-11-14 20:16:10,493:INFO: STOP 213: refineB1 76, 14 Thr, 272 R, 438 T, 166 F, 0 Q TotalTime= 0h 18.31m RunTime= 0h 6.57m CPUload=230% bionano1b 2022-11-14 20:16:18,351:INFO: STOP 288: refineB1 306, 14 Thr, 271 R, 438 T, 167 F, 0 Q TotalTime= 0h 18.14m RunTime= 0h 4.79m CPUload=269% saphyr1a 2022-11-14 20:16:27,889:INFO: STOP 135: refineB1 216, 14 Thr, 270 R, 438 T, 168 F, 0 Q TotalTime= 0h 19.21m RunTime= 0h 18.79m CPUload=170% bionano2c 2022-11-14 20:16:32,070:INFO: STOP 336: refineB1 354, 14 Thr, 269 R, 438 T, 169 F, 0 Q TotalTime= 0h 18.34m RunTime= 0h 3.45m CPUload=295% saphyr1a 2022-11-14 20:16:39,235:INFO: STOP 99: refineB1 198, 14 Thr, 268 R, 438 T, 170 F, 0 Q TotalTime= 0h 19.41m RunTime= 0h 19.30m CPUload=234% saphyr1c 2022-11-14 20:16:39,247:INFO: STOP 53: refineB1 91, 14 Thr, 267 R, 438 T, 171 F, 0 Q TotalTime= 0h 19.44m RunTime= 0h 19.41m CPUload=179% bionano2b 2022-11-14 20:16:47,684:INFO: STOP 22: refineB1 22, 56 Thr, 266 R, 438 T, 172 F, 0 Q TotalTime= 0h 19.61m RunTime= 0h 19.47m CPUload=703% bionano1c 2022-11-14 20:16:50,683:INFO: STOP 23: refineB1 23, 56 Thr, 265 R, 438 T, 173 F, 0 Q TotalTime= 0h 19.66m RunTime= 0h 19.55m CPUload=622% bionano1b 2022-11-14 20:16:56,177:INFO: STOP 182: refineB1 71, 14 Thr, 264 R, 438 T, 174 F, 0 Q TotalTime= 0h 19.66m RunTime= 0h 10.25m CPUload=204% saphyr1b 2022-11-14 20:17:01,738:INFO: STOP 289: refineB1 307, 14 Thr, 263 R, 438 T, 175 F, 0 Q TotalTime= 0h 18.86m RunTime= 0h 5.49m CPUload=289% saphyr1a 2022-11-14 20:17:01,994:INFO: STOP 259: refineB1 277, 14 Thr, 262 R, 438 T, 176 F, 0 Q TotalTime= 0h 18.88m RunTime= 0h 6.43m CPUload=172% bionano2d 2022-11-14 20:17:35,251:INFO: STOP 239: refineB1 172, 14 Thr, 261 R, 438 T, 177 F, 0 Q TotalTime= 0h 19.45m RunTime= 0h 7.90m CPUload=188% bionano2a 2022-11-14 20:17:35,410:INFO: STOP 222: refineB1 78, 14 Thr, 260 R, 438 T, 178 F, 0 Q TotalTime= 0h 19.47m RunTime= 0h 7.91m CPUload=240% bionano2a 2022-11-14 20:17:35,443:INFO: STOP 218: refineB1 77, 14 Thr, 259 R, 438 T, 179 F, 0 Q TotalTime= 0h 19.50m RunTime= 0h 7.93m CPUload=199% bionano2a 2022-11-14 20:17:37,156:INFO: STOP 327: refineB1 345, 14 Thr, 258 R, 438 T, 180 F, 0 Q TotalTime= 0h 19.43m RunTime= 0h 5.19m CPUload=289% saphyr1a 2022-11-14 20:17:38,503:INFO: STOP 100: refineB1 115, 14 Thr, 257 R, 438 T, 181 F, 0 Q TotalTime= 0h 20.40m RunTime= 0h 20.33m CPUload=207% saphyr1b 2022-11-14 20:17:43,736:INFO: STOP 198: refineB1 157, 14 Thr, 256 R, 438 T, 182 F, 0 Q TotalTime= 0h 20.44m RunTime= 0h 9.14m CPUload=141% bionano1c 2022-11-14 20:17:45,091:INFO: STOP 343: refineB1 361, 14 Thr, 255 R, 438 T, 183 F, 0 Q TotalTime= 0h 19.56m RunTime= 0h 4.23m CPUload=287% saphyr1a 2022-11-14 20:17:49,188:INFO: STOP 187: refineB1 72, 14 Thr, 254 R, 438 T, 184 F, 0 Q TotalTime= 0h 20.54m RunTime= 0h 10.12m CPUload=251% bionano1b 2022-11-14 20:17:53,933:INFO: STOP 254: refineB1 272, 14 Thr, 253 R, 438 T, 185 F, 0 Q TotalTime= 0h 19.75m RunTime= 0h 7.64m CPUload=58% bionano1c 2022-11-14 20:17:56,547:INFO: STOP 258: refineB1 276, 14 Thr, 252 R, 438 T, 186 F, 0 Q TotalTime= 0h 19.79m RunTime= 0h 7.42m CPUload=114% bionano1d 2022-11-14 20:18:01,474:INFO: STOP 300: refineB1 318, 14 Thr, 251 R, 438 T, 187 F, 0 Q TotalTime= 0h 19.85m RunTime= 0h 6.42m CPUload=178% bionano1a 2022-11-14 20:18:01,655:INFO: STOP 280: refineB1 298, 14 Thr, 250 R, 438 T, 188 F, 0 Q TotalTime= 0h 19.87m RunTime= 0h 6.74m CPUload=154% bionano2d 2022-11-14 20:18:02,673:INFO: STOP 233: refineB1 52, 14 Thr, 249 R, 438 T, 189 F, 0 Q TotalTime= 0h 19.91m RunTime= 0h 8.32m CPUload=317% bionano2a 2022-11-14 20:18:05,253:INFO: STOP 236: refineB1 171, 14 Thr, 248 R, 438 T, 190 F, 0 Q TotalTime= 0h 19.95m RunTime= 0h 8.38m CPUload=173% bionano2a 2022-11-14 20:18:07,567:INFO: STOP 274: refineB1 292, 14 Thr, 247 R, 438 T, 191 F, 0 Q TotalTime= 0h 19.97m RunTime= 0h 7.07m CPUload=158% bionano2d 2022-11-14 20:18:09,701:INFO: STOP 324: refineB1 342, 14 Thr, 246 R, 438 T, 192 F, 0 Q TotalTime= 0h 19.98m RunTime= 0h 5.87m CPUload=332% saphyr1a 2022-11-14 20:18:12,879:INFO: STOP 255: refineB1 273, 14 Thr, 245 R, 438 T, 193 F, 0 Q TotalTime= 0h 20.07m RunTime= 0h 7.88m CPUload=111% bionano1d 2022-11-14 20:18:15,093:INFO: STOP 299: refineB1 317, 14 Thr, 244 R, 438 T, 194 F, 0 Q TotalTime= 0h 20.08m RunTime= 0h 6.69m CPUload=206% bionano1a 2022-11-14 20:18:15,703:INFO: STOP 220: refineB1 166, 14 Thr, 243 R, 438 T, 195 F, 0 Q TotalTime= 0h 20.14m RunTime= 0h 8.61m CPUload=198% bionano2a 2022-11-14 20:18:18,413:INFO: STOP 201: refineB1 241, 14 Thr, 242 R, 438 T, 196 F, 0 Q TotalTime= 0h 21.02m RunTime= 0h 9.49m CPUload=170% bionano2d 2022-11-14 20:18:24,638:INFO: STOP 364: refineB1 382, 14 Thr, 241 R, 438 T, 197 F, 0 Q TotalTime= 0h 20.21m RunTime= 0h 3.48m CPUload=301% saphyr1a 2022-11-14 20:18:25,281:INFO: STOP 296: refineB1 314, 14 Thr, 240 R, 438 T, 198 F, 0 Q TotalTime= 0h 20.25m RunTime= 0h 6.84m CPUload=179% bionano1a 2022-11-14 20:18:25,304:INFO: STOP 293: refineB1 311, 14 Thr, 239 R, 438 T, 199 F, 0 Q TotalTime= 0h 20.26m RunTime= 0h 6.87m CPUload=186% bionano1a 2022-11-14 20:18:27,816:INFO: STOP 292: refineB1 310, 14 Thr, 238 R, 438 T, 200 F, 0 Q TotalTime= 0h 20.30m RunTime= 0h 6.90m CPUload=157% bionano1a 2022-11-14 20:18:28,144:INFO: STOP 248: refineB1 266, 14 Thr, 237 R, 438 T, 201 F, 0 Q TotalTime= 0h 20.33m RunTime= 0h 8.32m CPUload=118% bionano1d 2022-11-14 20:18:28,460:INFO: STOP 205: refineB1 160, 14 Thr, 236 R, 438 T, 202 F, 0 Q TotalTime= 0h 20.82m RunTime= 0h 9.16m CPUload=196% bionano1d 2022-11-14 20:18:30,711:INFO: STOP 232: refineB1 170, 14 Thr, 235 R, 438 T, 203 F, 0 Q TotalTime= 0h 20.38m RunTime= 0h 8.82m CPUload=173% bionano2a 2022-11-14 20:18:34,084:INFO: STOP 180: refineB1 150, 14 Thr, 234 R, 438 T, 204 F, 0 Q TotalTime= 0h 21.29m RunTime= 0h 12.19m CPUload=206% bionano2d 2022-11-14 20:18:35,714:INFO: STOP 295: refineB1 313, 14 Thr, 233 R, 438 T, 205 F, 0 Q TotalTime= 0h 20.43m RunTime= 0h 7.04m CPUload=177% bionano1a 2022-11-14 20:18:36,041:INFO: STOP 249: refineB1 267, 14 Thr, 232 R, 438 T, 206 F, 0 Q TotalTime= 0h 20.46m RunTime= 0h 8.41m CPUload=104% bionano1c 2022-11-14 20:18:38,054:INFO: STOP 308: refineB1 326, 14 Thr, 231 R, 438 T, 207 F, 0 Q TotalTime= 0h 20.46m RunTime= 0h 6.96m CPUload=155% bionano1a 2022-11-14 20:18:40,497:INFO: STOP 305: refineB1 323, 14 Thr, 230 R, 438 T, 208 F, 0 Q TotalTime= 0h 20.50m RunTime= 0h 6.99m CPUload=178% bionano1a 2022-11-14 20:18:45,753:INFO: STOP 241: refineB1 259, 14 Thr, 229 R, 438 T, 209 F, 0 Q TotalTime= 0h 20.63m RunTime= 0h 9.07m CPUload=150% bionano2a 2022-11-14 20:18:47,297:INFO: STOP 352: refineB1 370, 14 Thr, 228 R, 438 T, 210 F, 0 Q TotalTime= 0h 20.59m RunTime= 0h 5.05m CPUload=324% saphyr1a 2022-11-14 20:18:48,076:INFO: STOP 253: refineB1 271, 14 Thr, 227 R, 438 T, 211 F, 0 Q TotalTime= 0h 20.66m RunTime= 0h 8.53m CPUload=103% saphyr1c 2022-11-14 20:18:48,193:INFO: STOP 230: refineB1 169, 14 Thr, 226 R, 438 T, 212 F, 0 Q TotalTime= 0h 20.67m RunTime= 0h 9.08m CPUload=222% bionano2a 2022-11-14 20:18:48,510:INFO: STOP 191: refineB1 73, 14 Thr, 225 R, 438 T, 213 F, 0 Q TotalTime= 0h 21.52m RunTime= 0h 10.71m CPUload=163% saphyr1d 2022-11-14 20:18:53,163:INFO: STOP 199: refineB1 74, 14 Thr, 224 R, 438 T, 214 F, 0 Q TotalTime= 0h 21.60m RunTime= 0h 10.31m CPUload=267% bionano1c 2022-11-14 20:18:55,662:INFO: STOP 21: refineB1 21, 56 Thr, 223 R, 438 T, 215 F, 0 Q TotalTime= 0h 21.74m RunTime= 0h 21.64m CPUload=732% saphyr1c 2022-11-14 20:18:59,897:INFO: STOP 242: refineB1 260, 14 Thr, 222 R, 438 T, 216 F, 0 Q TotalTime= 0h 20.86m RunTime= 0h 9.30m CPUload=190% bionano2d 2022-11-14 20:19:01,777:INFO: STOP 311: refineB1 329, 14 Thr, 221 R, 438 T, 217 F, 0 Q TotalTime= 0h 20.85m RunTime= 0h 7.32m CPUload=194% bionano1a 2022-11-14 20:19:04,183:INFO: STOP 298: refineB1 316, 14 Thr, 220 R, 438 T, 218 F, 0 Q TotalTime= 0h 20.90m RunTime= 0h 7.49m CPUload=194% bionano1a 2022-11-14 20:19:06,934:INFO: STOP 225: refineB1 79, 14 Thr, 219 R, 438 T, 219 F, 0 Q TotalTime= 0h 20.99m RunTime= 0h 9.41m CPUload=233% bionano2a 2022-11-14 20:19:07,272:INFO: STOP 20: refineB1 20, 56 Thr, 218 R, 438 T, 220 F, 0 Q TotalTime= 0h 21.93m RunTime= 0h 21.78m CPUload=651% bionano2c 2022-11-14 20:19:08,649:INFO: STOP 316: refineB1 334, 14 Thr, 217 R, 438 T, 221 F, 0 Q TotalTime= 0h 20.96m RunTime= 0h 7.47m CPUload=228% bionano1a 2022-11-14 20:19:08,651:INFO: STOP 315: refineB1 333, 14 Thr, 216 R, 438 T, 222 F, 0 Q TotalTime= 0h 20.96m RunTime= 0h 7.44m CPUload=200% bionano1a 2022-11-14 20:19:08,779:INFO: STOP 294: refineB1 312, 14 Thr, 215 R, 438 T, 223 F, 0 Q TotalTime= 0h 20.98m RunTime= 0h 7.57m CPUload=191% bionano1a 2022-11-14 20:19:09,410:INFO: STOP 195: refineB1 156, 14 Thr, 214 R, 438 T, 224 F, 0 Q TotalTime= 0h 21.87m RunTime= 0h 10.88m CPUload=239% bionano1b 2022-11-14 20:19:09,412:INFO: STOP 194: refineB1 155, 14 Thr, 213 R, 438 T, 225 F, 0 Q TotalTime= 0h 21.87m RunTime= 0h 11.00m CPUload=214% bionano1c 2022-11-14 20:19:13,117:INFO: STOP 317: refineB1 335, 14 Thr, 212 R, 438 T, 226 F, 0 Q TotalTime= 0h 21.04m RunTime= 0h 7.52m CPUload=188% bionano1a 2022-11-14 20:19:13,560:INFO: STOP 245: refineB1 263, 14 Thr, 211 R, 438 T, 227 F, 0 Q TotalTime= 0h 21.09m RunTime= 0h 9.24m CPUload=125% bionano1c 2022-11-14 20:19:14,884:INFO: STOP 366: refineB1 384, 14 Thr, 210 R, 438 T, 228 F, 0 Q TotalTime= 0h 21.04m RunTime= 0h 3.91m CPUload=324% saphyr1a 2022-11-14 20:19:14,896:INFO: STOP 363: refineB1 381, 14 Thr, 209 R, 438 T, 229 F, 0 Q TotalTime= 0h 21.04m RunTime= 0h 4.48m CPUload=306% saphyr1a 2022-11-14 20:19:15,656:INFO: STOP 264: refineB1 282, 14 Thr, 208 R, 438 T, 230 F, 0 Q TotalTime= 0h 21.11m RunTime= 0h 8.31m CPUload=155% bionano1d 2022-11-14 20:19:17,600:INFO: STOP 302: refineB1 320, 14 Thr, 207 R, 438 T, 231 F, 0 Q TotalTime= 0h 21.12m RunTime= 0h 7.72m CPUload=205% bionano1a 2022-11-14 20:19:20,372:INFO: STOP 200: refineB1 158, 14 Thr, 206 R, 438 T, 232 F, 0 Q TotalTime= 0h 22.05m RunTime= 0h 10.60m CPUload=173% saphyr1c 2022-11-14 20:19:21,845:INFO: STOP 314: refineB1 332, 14 Thr, 205 R, 438 T, 233 F, 0 Q TotalTime= 0h 21.19m RunTime= 0h 7.68m CPUload=202% bionano1a 2022-11-14 20:19:23,508:INFO: STOP 372: refineB1 390, 14 Thr, 204 R, 438 T, 234 F, 0 Q TotalTime= 0h 21.18m RunTime= 0h 3.76m CPUload=335% saphyr1a 2022-11-14 20:19:24,561:INFO: STOP 215: refineB1 164, 14 Thr, 203 R, 438 T, 235 F, 0 Q TotalTime= 0h 21.43m RunTime= 0h 9.72m CPUload=213% bionano2a 2022-11-14 20:19:26,138:INFO: STOP 312: refineB1 330, 14 Thr, 202 R, 438 T, 236 F, 0 Q TotalTime= 0h 21.26m RunTime= 0h 7.77m CPUload=201% bionano1a 2022-11-14 20:19:26,918:INFO: STOP 19: refineB1 19, 56 Thr, 201 R, 438 T, 237 F, 0 Q TotalTime= 0h 22.26m RunTime= 0h 22.17m CPUload=938% bionano1d 2022-11-14 20:19:28,587:INFO: STOP 256: refineB1 274, 14 Thr, 200 R, 438 T, 238 F, 0 Q TotalTime= 0h 21.33m RunTime= 0h 9.07m CPUload=121% bionano1d 2022-11-14 20:19:28,809:INFO: STOP 211: refineB1 162, 14 Thr, 199 R, 438 T, 239 F, 0 Q TotalTime= 0h 21.72m RunTime= 0h 9.88m CPUload=183% saphyr1c 2022-11-14 20:19:29,000:INFO: STOP 24: refineB1 24, 28 Thr, 198 R, 438 T, 240 F, 0 Q TotalTime= 0h 22.29m RunTime= 0h 22.22m CPUload=491% bionano2d 2022-11-14 20:19:30,354:INFO: STOP 307: refineB1 325, 14 Thr, 197 R, 438 T, 241 F, 0 Q TotalTime= 0h 21.33m RunTime= 0h 7.79m CPUload=213% bionano1a 2022-11-14 20:19:32,393:INFO: STOP 313: refineB1 331, 14 Thr, 196 R, 438 T, 242 F, 0 Q TotalTime= 0h 21.36m RunTime= 0h 7.85m CPUload=205% bionano1a 2022-11-14 20:19:32,615:INFO: STOP 270: refineB1 288, 14 Thr, 195 R, 438 T, 243 F, 0 Q TotalTime= 0h 21.39m RunTime= 0h 8.54m CPUload=149% bionano1d 2022-11-14 20:19:33,090:INFO: STOP 183: refineB1 151, 14 Thr, 194 R, 438 T, 244 F, 0 Q TotalTime= 0h 22.27m RunTime= 0h 12.77m CPUload=245% bionano1b 2022-11-14 20:19:34,562:INFO: STOP 284: refineB1 302, 14 Thr, 193 R, 438 T, 245 F, 0 Q TotalTime= 0h 21.41m RunTime= 0h 8.20m CPUload=220% bionano1a 2022-11-14 20:19:34,732:INFO: STOP 257: refineB1 275, 14 Thr, 192 R, 438 T, 246 F, 0 Q TotalTime= 0h 21.43m RunTime= 0h 9.05m CPUload=113% bionano1c 2022-11-14 20:19:35,120:INFO: STOP 172: refineB1 146, 14 Thr, 191 R, 438 T, 247 F, 0 Q TotalTime= 0h 22.31m RunTime= 0h 14.69m CPUload=182% saphyr1d 2022-11-14 20:19:36,787:INFO: STOP 240: refineB1 258, 14 Thr, 190 R, 438 T, 248 F, 0 Q TotalTime= 0h 21.48m RunTime= 0h 9.92m CPUload=167% bionano2a 2022-11-14 20:19:42,457:INFO: STOP 306: refineB1 324, 14 Thr, 189 R, 438 T, 249 F, 0 Q TotalTime= 0h 21.53m RunTime= 0h 8.02m CPUload=206% bionano1a 2022-11-14 20:19:46,429:INFO: STOP 304: refineB1 322, 14 Thr, 188 R, 438 T, 250 F, 0 Q TotalTime= 0h 21.60m RunTime= 0h 8.11m CPUload=188% bionano1a 2022-11-14 20:19:50,712:INFO: STOP 229: refineB1 80, 14 Thr, 187 R, 438 T, 251 F, 0 Q TotalTime= 0h 21.71m RunTime= 0h 10.15m CPUload=225% bionano2a 2022-11-14 20:19:50,955:INFO: STOP 189: refineB1 153, 14 Thr, 186 R, 438 T, 252 F, 0 Q TotalTime= 0h 22.57m RunTime= 0h 12.07m CPUload=268% bionano2c 2022-11-14 20:19:52,933:INFO: STOP 88: refineB1 194, 14 Thr, 185 R, 438 T, 253 F, 0 Q TotalTime= 0h 22.65m RunTime= 0h 22.57m CPUload=161% bionano2b 2022-11-14 20:19:55,517:INFO: STOP 391: refineB1 409, 14 Thr, 184 R, 438 T, 254 F, 0 Q TotalTime= 0h 21.71m RunTime= 0h 3.34m CPUload=337% saphyr1a 2022-11-14 20:19:55,708:INFO: STOP 371: refineB1 389, 14 Thr, 183 R, 438 T, 255 F, 0 Q TotalTime= 0h 21.72m RunTime= 0h 4.34m CPUload=340% saphyr1a 2022-11-14 20:19:56,223:INFO: STOP 297: refineB1 315, 14 Thr, 182 R, 438 T, 256 F, 0 Q TotalTime= 0h 21.77m RunTime= 0h 8.37m CPUload=217% bionano1a 2022-11-14 20:19:58,481:INFO: STOP 223: refineB1 167, 14 Thr, 181 R, 438 T, 257 F, 0 Q TotalTime= 0h 21.85m RunTime= 0h 10.29m CPUload=225% bionano2a 2022-11-14 20:19:58,483:INFO: STOP 221: refineB1 250, 14 Thr, 180 R, 438 T, 258 F, 0 Q TotalTime= 0h 21.85m RunTime= 0h 10.29m CPUload=166% bionano2a 2022-11-14 20:19:59,987:INFO: STOP 310: refineB1 328, 14 Thr, 179 R, 438 T, 259 F, 0 Q TotalTime= 0h 21.82m RunTime= 0h 8.33m CPUload=208% bionano1a 2022-11-14 20:20:00,020:INFO: STOP 291: refineB1 309, 14 Thr, 178 R, 438 T, 260 F, 0 Q TotalTime= 0h 21.84m RunTime= 0h 8.43m CPUload=234% bionano1a 2022-11-14 20:20:02,455:INFO: STOP 252: refineB1 270, 14 Thr, 177 R, 438 T, 261 F, 0 Q TotalTime= 0h 21.90m RunTime= 0h 9.75m CPUload=152% saphyr1c 2022-11-14 20:20:02,457:INFO: STOP 251: refineB1 269, 14 Thr, 176 R, 438 T, 262 F, 0 Q TotalTime= 0h 21.90m RunTime= 0h 9.90m CPUload=45% saphyr1b 2022-11-14 20:20:03,802:INFO: STOP 346: refineB1 364, 14 Thr, 175 R, 438 T, 263 F, 0 Q TotalTime= 0h 21.87m RunTime= 0h 6.47m CPUload=362% saphyr1a 2022-11-14 20:20:04,181:INFO: STOP 276: refineB1 294, 14 Thr, 174 R, 438 T, 264 F, 0 Q TotalTime= 0h 21.91m RunTime= 0h 8.83m CPUload=186% bionano2c 2022-11-14 20:20:05,346:INFO: STOP 379: refineB1 397, 14 Thr, 173 R, 438 T, 265 F, 0 Q TotalTime= 0h 21.88m RunTime= 0h 4.30m CPUload=411% saphyr1a 2022-11-14 20:20:07,687:INFO: STOP 309: refineB1 327, 14 Thr, 172 R, 438 T, 266 F, 0 Q TotalTime= 0h 21.95m RunTime= 0h 8.43m CPUload=221% bionano1a 2022-11-14 20:20:07,836:INFO: STOP 268: refineB1 286, 14 Thr, 171 R, 438 T, 267 F, 0 Q TotalTime= 0h 21.98m RunTime= 0h 9.22m CPUload=211% bionano2c 2022-11-14 20:20:16,752:INFO: STOP 278: refineB1 296, 14 Thr, 170 R, 438 T, 268 F, 0 Q TotalTime= 0h 22.12m RunTime= 0h 9.02m CPUload=138% bionano2c 2022-11-14 20:20:18,463:INFO: STOP 290: refineB1 308, 14 Thr, 169 R, 438 T, 269 F, 0 Q TotalTime= 0h 22.14m RunTime= 0h 8.73m CPUload=269% bionano1a 2022-11-14 20:20:18,486:INFO: STOP 285: refineB1 303, 14 Thr, 168 R, 438 T, 270 F, 0 Q TotalTime= 0h 22.15m RunTime= 0h 8.81m CPUload=194% saphyr1c 2022-11-14 20:20:20,483:INFO: STOP 224: refineB1 251, 14 Thr, 167 R, 438 T, 271 F, 0 Q TotalTime= 0h 22.21m RunTime= 0h 10.67m CPUload=183% bionano2a 2022-11-14 20:20:20,652:INFO: STOP 190: refineB1 237, 14 Thr, 166 R, 438 T, 272 F, 0 Q TotalTime= 0h 23.06m RunTime= 0h 12.27m CPUload=206% bionano1d 2022-11-14 20:20:21,325:INFO: STOP 389: refineB1 407, 14 Thr, 165 R, 438 T, 273 F, 0 Q TotalTime= 0h 22.14m RunTime= 0h 4.01m CPUload=399% saphyr1a 2022-11-14 20:20:22,040:INFO: STOP 272: refineB1 290, 14 Thr, 164 R, 438 T, 274 F, 0 Q TotalTime= 0h 22.21m RunTime= 0h 9.28m CPUload=144% saphyr1c 2022-11-14 20:20:24,066:INFO: STOP 196: refineB1 239, 14 Thr, 163 R, 438 T, 275 F, 0 Q TotalTime= 0h 23.11m RunTime= 0h 12.05m CPUload=205% bionano2d 2022-11-14 20:20:26,128:INFO: STOP 345: refineB1 363, 14 Thr, 162 R, 438 T, 276 F, 0 Q TotalTime= 0h 22.24m RunTime= 0h 6.80m CPUload=136% bionano2c 2022-11-14 20:20:31,718:INFO: STOP 226: refineB1 252, 14 Thr, 161 R, 438 T, 277 F, 0 Q TotalTime= 0h 22.40m RunTime= 0h 10.87m CPUload=175% bionano2a 2022-11-14 20:20:33,397:INFO: STOP 227: refineB1 168, 14 Thr, 160 R, 438 T, 278 F, 0 Q TotalTime= 0h 22.43m RunTime= 0h 10.89m CPUload=204% bionano2a 2022-11-14 20:20:33,452:INFO: STOP 210: refineB1 246, 14 Thr, 159 R, 438 T, 279 F, 0 Q TotalTime= 0h 22.81m RunTime= 0h 11.12m CPUload=189% bionano1c 2022-11-14 20:20:36,506:INFO: STOP 301: refineB1 319, 14 Thr, 158 R, 438 T, 280 F, 0 Q TotalTime= 0h 22.44m RunTime= 0h 9.04m CPUload=268% bionano1a 2022-11-14 20:20:38,998:INFO: STOP 334: refineB1 352, 14 Thr, 157 R, 438 T, 281 F, 0 Q TotalTime= 0h 22.46m RunTime= 0h 7.60m CPUload=148% bionano1d 2022-11-14 20:20:39,335:INFO: STOP 235: refineB1 256, 14 Thr, 156 R, 438 T, 282 F, 0 Q TotalTime= 0h 22.52m RunTime= 0h 10.97m CPUload=193% bionano2a 2022-11-14 20:20:40,929:INFO: STOP 261: refineB1 279, 14 Thr, 155 R, 438 T, 283 F, 0 Q TotalTime= 0h 22.53m RunTime= 0h 10.04m CPUload=189% bionano2c 2022-11-14 20:20:41,130:INFO: STOP 192: refineB1 154, 14 Thr, 154 R, 438 T, 284 F, 0 Q TotalTime= 0h 23.40m RunTime= 0h 12.59m CPUload=145% saphyr1d 2022-11-14 20:20:41,572:INFO: STOP 412: refineB1 430, 14 Thr, 153 R, 438 T, 285 F, 0 Q TotalTime= 0h 22.47m RunTime= 0h 2.93m CPUload=465% saphyr1a 2022-11-14 20:20:41,594:INFO: STOP 409: refineB1 427, 14 Thr, 152 R, 438 T, 286 F, 0 Q TotalTime= 0h 22.47m RunTime= 0h 3.06m CPUload=439% saphyr1a 2022-11-14 20:20:43,221:INFO: STOP 405: refineB1 423, 14 Thr, 151 R, 438 T, 287 F, 0 Q TotalTime= 0h 22.50m RunTime= 0h 3.68m CPUload=549% saphyr1a 2022-11-14 20:20:44,030:INFO: STOP 277: refineB1 295, 14 Thr, 150 R, 438 T, 288 F, 0 Q TotalTime= 0h 22.57m RunTime= 0h 9.51m CPUload=169% bionano2c 2022-11-14 20:20:45,272:INFO: STOP 349: refineB1 367, 14 Thr, 149 R, 438 T, 289 F, 0 Q TotalTime= 0h 22.56m RunTime= 0h 7.05m CPUload=190% bionano2c 2022-11-14 20:20:45,535:INFO: STOP 287: refineB1 305, 14 Thr, 148 R, 438 T, 290 F, 0 Q TotalTime= 0h 22.60m RunTime= 0h 9.27m CPUload=190% bionano1c 2022-11-14 20:20:52,028:INFO: STOP 197: refineB1 240, 14 Thr, 147 R, 438 T, 291 F, 0 Q TotalTime= 0h 23.58m RunTime= 0h 12.29m CPUload=261% saphyr1c 2022-11-14 20:20:54,522:INFO: STOP 351: refineB1 369, 14 Thr, 146 R, 438 T, 292 F, 0 Q TotalTime= 0h 22.71m RunTime= 0h 7.22m CPUload=202% bionano2c 2022-11-14 20:20:54,773:INFO: STOP 318: refineB1 336, 14 Thr, 145 R, 438 T, 293 F, 0 Q TotalTime= 0h 22.73m RunTime= 0h 9.13m CPUload=216% bionano1b 2022-11-14 20:20:54,774:INFO: STOP 303: refineB1 321, 14 Thr, 144 R, 438 T, 294 F, 0 Q TotalTime= 0h 22.74m RunTime= 0h 9.35m CPUload=208% bionano1b 2022-11-14 20:20:54,859:INFO: STOP 265: refineB1 283, 14 Thr, 143 R, 438 T, 295 F, 0 Q TotalTime= 0h 22.76m RunTime= 0h 9.98m CPUload=201% saphyr1c 2022-11-14 20:20:55,415:INFO: STOP 421: refineB1 81, 14 Thr, 142 R, 438 T, 296 F, 0 Q TotalTime= 0h 22.69m RunTime= 0h 2.75m CPUload=673% saphyr1a 2022-11-14 20:21:00,531:INFO: STOP 338: refineB1 356, 14 Thr, 141 R, 438 T, 297 F, 0 Q TotalTime= 0h 22.81m RunTime= 0h 7.69m CPUload=232% bionano2c 2022-11-14 20:21:00,837:INFO: STOP 231: refineB1 254, 14 Thr, 140 R, 438 T, 298 F, 0 Q TotalTime= 0h 22.88m RunTime= 0h 11.31m CPUload=175% bionano2a 2022-11-14 20:21:02,213:INFO: STOP 269: refineB1 287, 14 Thr, 139 R, 438 T, 299 F, 0 Q TotalTime= 0h 22.88m RunTime= 0h 10.07m CPUload=218% saphyr1c 2022-11-14 20:21:02,310:INFO: STOP 219: refineB1 249, 14 Thr, 138 R, 438 T, 300 F, 0 Q TotalTime= 0h 22.92m RunTime= 0h 11.39m CPUload=198% bionano2a 2022-11-14 20:21:02,322:INFO: STOP 216: refineB1 248, 14 Thr, 137 R, 438 T, 301 F, 0 Q TotalTime= 0h 23.00m RunTime= 0h 11.35m CPUload=201% bionano2a 2022-11-14 20:21:03,728:INFO: STOP 234: refineB1 255, 14 Thr, 136 R, 438 T, 302 F, 0 Q TotalTime= 0h 22.93m RunTime= 0h 11.35m CPUload=208% bionano2a 2022-11-14 20:21:04,934:INFO: STOP 329: refineB1 347, 14 Thr, 135 R, 438 T, 303 F, 0 Q TotalTime= 0h 22.89m RunTime= 0h 8.48m CPUload=180% bionano1c 2022-11-14 20:21:08,776:INFO: STOP 326: refineB1 344, 14 Thr, 134 R, 438 T, 304 F, 0 Q TotalTime= 0h 22.96m RunTime= 0h 8.73m CPUload=279% saphyr1c 2022-11-14 20:21:09,857:INFO: STOP 373: refineB1 391, 14 Thr, 133 R, 438 T, 305 F, 0 Q TotalTime= 0h 22.95m RunTime= 0h 5.44m CPUload=300% bionano2c 2022-11-14 20:21:10,373:INFO: STOP 217: refineB1 165, 14 Thr, 132 R, 438 T, 306 F, 0 Q TotalTime= 0h 23.11m RunTime= 0h 11.50m CPUload=240% bionano2a 2022-11-14 20:21:11,403:INFO: STOP 350: refineB1 368, 14 Thr, 131 R, 438 T, 307 F, 0 Q TotalTime= 0h 22.99m RunTime= 0h 7.47m CPUload=166% bionano1d 2022-11-14 20:21:11,690:INFO: STOP 263: refineB1 281, 14 Thr, 130 R, 438 T, 308 F, 0 Q TotalTime= 0h 23.04m RunTime= 0h 10.28m CPUload=210% bionano1d 2022-11-14 20:21:13,112:INFO: STOP 228: refineB1 253, 14 Thr, 129 R, 438 T, 309 F, 0 Q TotalTime= 0h 23.09m RunTime= 0h 11.56m CPUload=191% bionano2a 2022-11-14 20:21:13,376:INFO: STOP 5: refineB1 5, 56 Thr, 128 R, 438 T, 310 F, 0 Q TotalTime= 0h 24.04m RunTime= 0h 24.02m CPUload=1152% saphyr1a 2022-11-14 20:21:14,898:INFO: STOP 426: refineB1 176, 14 Thr, 127 R, 438 T, 311 F, 0 Q TotalTime= 0h 23.01m RunTime= 0h 2.83m CPUload=685% saphyr1a 2022-11-14 20:21:15,739:INFO: STOP 321: refineB1 339, 14 Thr, 126 R, 438 T, 312 F, 0 Q TotalTime= 0h 23.08m RunTime= 0h 9.23m CPUload=218% bionano2c 2022-11-14 20:21:16,873:INFO: STOP 237: refineB1 257, 14 Thr, 125 R, 438 T, 313 F, 0 Q TotalTime= 0h 23.15m RunTime= 0h 11.55m CPUload=205% bionano2a 2022-11-14 20:21:16,919:INFO: STOP 206: refineB1 244, 14 Thr, 124 R, 438 T, 314 F, 0 Q TotalTime= 0h 23.61m RunTime= 0h 11.98m CPUload=204% bionano2d 2022-11-14 20:21:17,583:INFO: STOP 390: refineB1 408, 14 Thr, 123 R, 438 T, 315 F, 0 Q TotalTime= 0h 23.08m RunTime= 0h 4.78m CPUload=266% bionano2c 2022-11-14 20:21:19,440:INFO: STOP 286: refineB1 304, 14 Thr, 122 R, 438 T, 316 F, 0 Q TotalTime= 0h 23.16m RunTime= 0h 9.88m CPUload=112% bionano2b 2022-11-14 20:21:21,985:INFO: STOP 333: refineB1 351, 14 Thr, 121 R, 438 T, 317 F, 0 Q TotalTime= 0h 23.18m RunTime= 0h 8.38m CPUload=260% saphyr1c 2022-11-14 20:21:22,368:INFO: STOP 11: refineB1 11, 56 Thr, 120 R, 438 T, 318 F, 0 Q TotalTime= 0h 24.19m RunTime= 0h 24.15m CPUload=909% bionano2c 2022-11-14 20:21:24,973:INFO: STOP 12: refineB1 12, 56 Thr, 119 R, 438 T, 319 F, 0 Q TotalTime= 0h 24.23m RunTime= 0h 24.21m CPUload=1064% saphyr1c 2022-11-14 20:21:25,695:INFO: STOP 362: refineB1 380, 14 Thr, 118 R, 438 T, 320 F, 0 Q TotalTime= 0h 23.22m RunTime= 0h 6.79m CPUload=264% saphyr1c 2022-11-14 20:21:29,851:INFO: STOP 283: refineB1 301, 14 Thr, 117 R, 438 T, 321 F, 0 Q TotalTime= 0h 23.34m RunTime= 0h 10.13m CPUload=101% saphyr1b 2022-11-14 20:21:29,930:INFO: STOP 247: refineB1 265, 14 Thr, 116 R, 438 T, 322 F, 0 Q TotalTime= 0h 23.36m RunTime= 0h 11.44m CPUload=101% saphyr1b 2022-11-14 20:21:30,020:INFO: STOP 186: refineB1 152, 14 Thr, 115 R, 438 T, 323 F, 0 Q TotalTime= 0h 24.22m RunTime= 0h 14.29m CPUload=188% saphyr1b 2022-11-14 20:21:35,716:INFO: STOP 380: refineB1 398, 14 Thr, 114 R, 438 T, 324 F, 0 Q TotalTime= 0h 23.38m RunTime= 0h 5.72m CPUload=332% bionano2c 2022-11-14 20:21:37,452:INFO: STOP 212: refineB1 247, 14 Thr, 113 R, 438 T, 325 F, 0 Q TotalTime= 0h 23.80m RunTime= 0h 12.03m CPUload=225% bionano1b 2022-11-14 20:21:38,298:INFO: STOP 365: refineB1 383, 14 Thr, 112 R, 438 T, 326 F, 0 Q TotalTime= 0h 23.43m RunTime= 0h 6.68m CPUload=300% saphyr1c 2022-11-14 20:21:39,318:INFO: STOP 393: refineB1 411, 14 Thr, 111 R, 438 T, 327 F, 0 Q TotalTime= 0h 23.44m RunTime= 0h 4.90m CPUload=339% saphyr1c 2022-11-14 20:21:39,671:INFO: STOP 340: refineB1 358, 14 Thr, 110 R, 438 T, 328 F, 0 Q TotalTime= 0h 23.47m RunTime= 0h 8.06m CPUload=244% bionano1d 2022-11-14 20:21:39,959:INFO: STOP 185: refineB1 235, 14 Thr, 109 R, 438 T, 329 F, 0 Q TotalTime= 0h 24.38m RunTime= 0h 14.46m CPUload=152% saphyr1b 2022-11-14 20:21:40,684:INFO: STOP 369: refineB1 387, 14 Thr, 108 R, 438 T, 330 F, 0 Q TotalTime= 0h 23.47m RunTime= 0h 6.11m CPUload=216% bionano2a 2022-11-14 20:21:43,066:INFO: STOP 361: refineB1 379, 14 Thr, 107 R, 438 T, 331 F, 0 Q TotalTime= 0h 23.51m RunTime= 0h 7.32m CPUload=356% bionano2c 2022-11-14 20:21:43,646:INFO: STOP 435: refineB1 85, 14 Thr, 106 R, 438 T, 332 F, 0 Q TotalTime= 0h 23.49m RunTime= 0h 3.08m CPUload=499% bionano1a 2022-11-14 20:21:44,619:INFO: STOP 203: refineB1 242, 14 Thr, 105 R, 438 T, 333 F, 0 Q TotalTime= 0h 24.19m RunTime= 0h 12.74m CPUload=157% bionano2b 2022-11-14 20:21:45,570:INFO: STOP 330: refineB1 348, 14 Thr, 104 R, 438 T, 334 F, 0 Q TotalTime= 0h 23.57m RunTime= 0h 9.05m CPUload=216% bionano1d 2022-11-14 20:21:45,725:INFO: STOP 209: refineB1 161, 14 Thr, 103 R, 438 T, 335 F, 0 Q TotalTime= 0h 24.02m RunTime= 0h 12.36m CPUload=190% saphyr1d 2022-11-14 20:21:47,908:INFO: STOP 273: refineB1 291, 14 Thr, 102 R, 438 T, 336 F, 0 Q TotalTime= 0h 23.64m RunTime= 0h 10.73m CPUload=217% bionano1d 2022-11-14 20:21:49,052:INFO: STOP 262: refineB1 280, 14 Thr, 101 R, 438 T, 337 F, 0 Q TotalTime= 0h 23.67m RunTime= 0h 11.08m CPUload=119% saphyr1d 2022-11-14 20:21:51,160:INFO: STOP 328: refineB1 346, 14 Thr, 100 R, 438 T, 338 F, 0 Q TotalTime= 0h 23.66m RunTime= 0h 9.29m CPUload=178% bionano1d 2022-11-14 20:21:52,350:INFO: STOP 250: refineB1 268, 14 Thr, 99 R, 438 T, 339 F, 0 Q TotalTime= 0h 23.73m RunTime= 0h 11.59m CPUload=123% saphyr1d 2022-11-14 20:21:53,716:INFO: STOP 427: refineB1 83, 14 Thr, 98 R, 438 T, 340 F, 0 Q TotalTime= 0h 23.66m RunTime= 0h 3.46m CPUload=557% bionano1a 2022-11-14 20:21:54,448:INFO: STOP 319: refineB1 337, 14 Thr, 97 R, 438 T, 341 F, 0 Q TotalTime= 0h 23.72m RunTime= 0h 9.92m CPUload=219% bionano1d 2022-11-14 20:21:55,246:INFO: STOP 368: refineB1 386, 14 Thr, 96 R, 438 T, 342 F, 0 Q TotalTime= 0h 23.71m RunTime= 0h 6.25m CPUload=378% saphyr1c 2022-11-14 20:21:55,368:INFO: STOP 344: refineB1 362, 14 Thr, 95 R, 438 T, 343 F, 0 Q TotalTime= 0h 23.73m RunTime= 0h 8.28m CPUload=181% bionano1c 2022-11-14 20:21:59,976:INFO: STOP 423: refineB1 174, 14 Thr, 94 R, 438 T, 344 F, 0 Q TotalTime= 0h 23.77m RunTime= 0h 3.73m CPUload=478% bionano1a 2022-11-14 20:22:00,578:INFO: STOP 335: refineB1 353, 14 Thr, 93 R, 438 T, 345 F, 0 Q TotalTime= 0h 23.82m RunTime= 0h 8.92m CPUload=265% bionano1d 2022-11-14 20:22:01,583:INFO: STOP 337: refineB1 355, 14 Thr, 92 R, 438 T, 346 F, 0 Q TotalTime= 0h 23.83m RunTime= 0h 8.82m CPUload=244% bionano1d 2022-11-14 20:22:01,727:INFO: STOP 202: refineB1 159, 14 Thr, 91 R, 438 T, 347 F, 0 Q TotalTime= 0h 24.61m RunTime= 0h 13.19m CPUload=232% bionano2d 2022-11-14 20:22:04,867:INFO: STOP 436: refineB1 183, 14 Thr, 90 R, 438 T, 348 F, 0 Q TotalTime= 0h 23.84m RunTime= 0h 3.43m CPUload=533% bionano1a 2022-11-14 20:22:08,674:INFO: STOP 207: refineB1 245, 14 Thr, 89 R, 438 T, 349 F, 0 Q TotalTime= 0h 24.45m RunTime= 0h 12.83m CPUload=172% saphyr1b 2022-11-14 20:22:08,832:INFO: STOP 437: refineB1 86, 14 Thr, 88 R, 438 T, 350 F, 0 Q TotalTime= 0h 23.91m RunTime= 0h 3.44m CPUload=589% bionano1a 2022-11-14 20:22:08,991:INFO: STOP 416: refineB1 434, 14 Thr, 87 R, 438 T, 351 F, 0 Q TotalTime= 0h 23.92m RunTime= 0h 4.12m CPUload=396% bionano1a 2022-11-14 20:22:09,862:INFO: STOP 428: refineB1 177, 14 Thr, 86 R, 438 T, 352 F, 0 Q TotalTime= 0h 23.93m RunTime= 0h 3.69m CPUload=550% bionano1a 2022-11-14 20:22:10,556:INFO: STOP 267: refineB1 285, 14 Thr, 85 R, 438 T, 353 F, 0 Q TotalTime= 0h 24.02m RunTime= 0h 11.38m CPUload=120% bionano2b 2022-11-14 20:22:13,563:INFO: STOP 431: refineB1 180, 14 Thr, 84 R, 438 T, 354 F, 0 Q TotalTime= 0h 23.99m RunTime= 0h 3.74m CPUload=517% bionano1a 2022-11-14 20:22:14,179:INFO: STOP 339: refineB1 357, 14 Thr, 83 R, 438 T, 355 F, 0 Q TotalTime= 0h 24.04m RunTime= 0h 9.00m CPUload=153% saphyr1d 2022-11-14 20:22:14,292:INFO: STOP 204: refineB1 243, 14 Thr, 82 R, 438 T, 356 F, 0 Q TotalTime= 0h 24.61m RunTime= 0h 13.15m CPUload=191% saphyr1d 2022-11-14 20:22:15,927:INFO: STOP 353: refineB1 371, 14 Thr, 81 R, 438 T, 357 F, 0 Q TotalTime= 0h 24.07m RunTime= 0h 8.47m CPUload=125% saphyr1d 2022-11-14 20:22:16,051:INFO: STOP 281: refineB1 299, 14 Thr, 80 R, 438 T, 358 F, 0 Q TotalTime= 0h 24.11m RunTime= 0h 10.90m CPUload=162% saphyr1b 2022-11-14 20:22:26,448:INFO: STOP 358: refineB1 376, 14 Thr, 79 R, 438 T, 359 F, 0 Q TotalTime= 0h 24.24m RunTime= 0h 8.35m CPUload=162% bionano2b 2022-11-14 20:22:27,494:INFO: STOP 214: refineB1 163, 14 Thr, 78 R, 438 T, 360 F, 0 Q TotalTime= 0h 24.55m RunTime= 0h 12.79m CPUload=215% saphyr1b 2022-11-14 20:22:28,051:INFO: STOP 383: refineB1 401, 14 Thr, 77 R, 438 T, 361 F, 0 Q TotalTime= 0h 24.25m RunTime= 0h 6.61m CPUload=240% bionano2a 2022-11-14 20:22:30,690:INFO: STOP 370: refineB1 388, 14 Thr, 76 R, 438 T, 362 F, 0 Q TotalTime= 0h 24.30m RunTime= 0h 6.85m CPUload=313% bionano1d 2022-11-14 20:22:31,711:INFO: STOP 320: refineB1 338, 14 Thr, 75 R, 438 T, 363 F, 0 Q TotalTime= 0h 24.34m RunTime= 0h 10.45m CPUload=221% bionano1c 2022-11-14 20:22:31,945:INFO: STOP 424: refineB1 82, 14 Thr, 74 R, 438 T, 364 F, 0 Q TotalTime= 0h 24.30m RunTime= 0h 4.22m CPUload=421% bionano2a 2022-11-14 20:22:32,069:INFO: STOP 407: refineB1 425, 14 Thr, 73 R, 438 T, 365 F, 0 Q TotalTime= 0h 24.31m RunTime= 0h 4.89m CPUload=256% bionano2a 2022-11-14 20:22:33,248:INFO: STOP 357: refineB1 375, 14 Thr, 72 R, 438 T, 366 F, 0 Q TotalTime= 0h 24.35m RunTime= 0h 8.53m CPUload=228% bionano1c 2022-11-14 20:22:34,989:INFO: STOP 193: refineB1 238, 14 Thr, 71 R, 438 T, 367 F, 0 Q TotalTime= 0h 25.30m RunTime= 0h 14.46m CPUload=227% saphyr1d 2022-11-14 20:22:39,003:INFO: STOP 348: refineB1 366, 14 Thr, 70 R, 438 T, 368 F, 0 Q TotalTime= 0h 24.45m RunTime= 0h 8.95m CPUload=154% saphyr1d 2022-11-14 20:22:39,717:INFO: STOP 367: refineB1 385, 14 Thr, 69 R, 438 T, 369 F, 0 Q TotalTime= 0h 24.45m RunTime= 0h 7.14m CPUload=155% saphyr1d 2022-11-14 20:22:42,910:INFO: STOP 322: refineB1 340, 14 Thr, 68 R, 438 T, 370 F, 0 Q TotalTime= 0h 24.53m RunTime= 0h 10.51m CPUload=161% saphyr1b 2022-11-14 20:22:42,913:INFO: STOP 282: refineB1 300, 14 Thr, 67 R, 438 T, 371 F, 0 Q TotalTime= 0h 24.55m RunTime= 0h 11.25m CPUload=160% saphyr1b 2022-11-14 20:22:43,869:INFO: STOP 422: refineB1 173, 14 Thr, 66 R, 438 T, 372 F, 0 Q TotalTime= 0h 24.50m RunTime= 0h 4.47m CPUload=525% bionano1d 2022-11-14 20:22:45,821:INFO: STOP 331: refineB1 349, 14 Thr, 65 R, 438 T, 373 F, 0 Q TotalTime= 0h 24.57m RunTime= 0h 10.00m CPUload=176% saphyr1b 2022-11-14 20:22:50,734:INFO: STOP 375: refineB1 393, 14 Thr, 64 R, 438 T, 374 F, 0 Q TotalTime= 0h 24.63m RunTime= 0h 7.12m CPUload=155% bionano2b 2022-11-14 20:22:51,600:INFO: STOP 17: refineB1 17, 56 Thr, 63 R, 438 T, 375 F, 0 Q TotalTime= 0h 25.67m RunTime= 0h 25.60m CPUload=830% bionano2b 2022-11-14 20:22:51,747:INFO: STOP 430: refineB1 179, 14 Thr, 62 R, 438 T, 376 F, 0 Q TotalTime= 0h 24.63m RunTime= 0h 4.34m CPUload=423% bionano1d 2022-11-14 20:22:51,872:INFO: STOP 408: refineB1 426, 14 Thr, 61 R, 438 T, 377 F, 0 Q TotalTime= 0h 24.64m RunTime= 0h 5.23m CPUload=297% bionano2a 2022-11-14 20:22:54,220:INFO: STOP 347: refineB1 365, 14 Thr, 60 R, 438 T, 378 F, 0 Q TotalTime= 0h 24.71m RunTime= 0h 9.31m CPUload=168% bionano2b 2022-11-14 20:22:59,475:INFO: STOP 360: refineB1 378, 14 Thr, 59 R, 438 T, 379 F, 0 Q TotalTime= 0h 24.79m RunTime= 0h 8.66m CPUload=193% bionano2b 2022-11-14 20:23:02,120:INFO: STOP 354: refineB1 372, 14 Thr, 58 R, 438 T, 380 F, 0 Q TotalTime= 0h 24.84m RunTime= 0h 9.26m CPUload=189% saphyr1d 2022-11-14 20:23:03,273:INFO: STOP 386: refineB1 404, 14 Thr, 57 R, 438 T, 381 F, 0 Q TotalTime= 0h 24.84m RunTime= 0h 7.07m CPUload=212% bionano2b 2022-11-14 20:23:04,003:INFO: STOP 356: refineB1 374, 14 Thr, 56 R, 438 T, 382 F, 0 Q TotalTime= 0h 24.87m RunTime= 0h 9.19m CPUload=213% saphyr1d 2022-11-14 20:23:06,112:INFO: STOP 419: refineB1 437, 14 Thr, 55 R, 438 T, 383 F, 0 Q TotalTime= 0h 24.87m RunTime= 0h 4.98m CPUload=404% bionano2a 2022-11-14 20:23:07,001:INFO: STOP 378: refineB1 396, 14 Thr, 54 R, 438 T, 384 F, 0 Q TotalTime= 0h 24.90m RunTime= 0h 7.36m CPUload=217% saphyr1b 2022-11-14 20:23:08,893:INFO: STOP 323: refineB1 341, 14 Thr, 53 R, 438 T, 385 F, 0 Q TotalTime= 0h 24.96m RunTime= 0h 10.92m CPUload=209% bionano2d 2022-11-14 20:23:09,903:INFO: STOP 388: refineB1 406, 14 Thr, 52 R, 438 T, 386 F, 0 Q TotalTime= 0h 24.95m RunTime= 0h 6.93m CPUload=202% bionano1b 2022-11-14 20:23:09,928:INFO: STOP 384: refineB1 402, 14 Thr, 51 R, 438 T, 387 F, 0 Q TotalTime= 0h 24.95m RunTime= 0h 7.26m CPUload=202% bionano1b 2022-11-14 20:23:10,436:INFO: STOP 395: refineB1 413, 14 Thr, 50 R, 438 T, 388 F, 0 Q TotalTime= 0h 24.95m RunTime= 0h 6.34m CPUload=240% bionano1c 2022-11-14 20:23:10,526:INFO: STOP 374: refineB1 392, 14 Thr, 49 R, 438 T, 389 F, 0 Q TotalTime= 0h 24.97m RunTime= 0h 7.46m CPUload=177% bionano2b 2022-11-14 20:23:11,823:INFO: STOP 432: refineB1 84, 14 Thr, 48 R, 438 T, 390 F, 0 Q TotalTime= 0h 24.96m RunTime= 0h 4.66m CPUload=526% bionano2a 2022-11-14 20:23:11,936:INFO: STOP 406: refineB1 424, 14 Thr, 47 R, 438 T, 391 F, 0 Q TotalTime= 0h 24.97m RunTime= 0h 5.58m CPUload=457% bionano2a 2022-11-14 20:23:13,210:INFO: STOP 325: refineB1 343, 14 Thr, 46 R, 438 T, 392 F, 0 Q TotalTime= 0h 25.03m RunTime= 0h 10.92m CPUload=236% saphyr1d 2022-11-14 20:23:14,238:INFO: STOP 18: refineB1 18, 56 Thr, 45 R, 438 T, 393 F, 0 Q TotalTime= 0h 26.05m RunTime= 0h 25.97m CPUload=850% saphyr1d 2022-11-14 20:23:15,614:INFO: STOP 385: refineB1 403, 14 Thr, 44 R, 438 T, 394 F, 0 Q TotalTime= 0h 25.04m RunTime= 0h 7.29m CPUload=216% bionano2b 2022-11-14 20:23:15,894:INFO: STOP 418: refineB1 436, 14 Thr, 43 R, 438 T, 395 F, 0 Q TotalTime= 0h 25.04m RunTime= 0h 5.21m CPUload=439% bionano2a 2022-11-14 20:23:18,547:INFO: STOP 342: refineB1 360, 14 Thr, 42 R, 438 T, 396 F, 0 Q TotalTime= 0h 25.11m RunTime= 0h 9.89m CPUload=202% saphyr1b 2022-11-14 20:23:19,004:INFO: STOP 355: refineB1 373, 14 Thr, 41 R, 438 T, 397 F, 0 Q TotalTime= 0h 25.12m RunTime= 0h 9.39m CPUload=275% bionano1c 2022-11-14 20:23:19,141:INFO: STOP 438: refineB1 184, 14 Thr, 40 R, 438 T, 398 F, 0 Q TotalTime= 0h 25.08m RunTime= 0h 4.54m CPUload=538% bionano2a 2022-11-14 20:23:19,797:INFO: STOP 396: refineB1 414, 14 Thr, 39 R, 438 T, 399 F, 0 Q TotalTime= 0h 25.11m RunTime= 0h 6.46m CPUload=212% bionano1c 2022-11-14 20:23:21,765:INFO: STOP 429: refineB1 178, 14 Thr, 38 R, 438 T, 400 F, 0 Q TotalTime= 0h 25.13m RunTime= 0h 4.84m CPUload=517% bionano1d 2022-11-14 20:23:23,237:INFO: STOP 382: refineB1 400, 14 Thr, 37 R, 438 T, 401 F, 0 Q TotalTime= 0h 25.17m RunTime= 0h 7.52m CPUload=204% bionano2d 2022-11-14 20:23:28,275:INFO: STOP 10: refineB1 10, 56 Thr, 36 R, 438 T, 402 F, 0 Q TotalTime= 0h 26.29m RunTime= 0h 26.25m CPUload=1050% saphyr1d 2022-11-14 20:23:29,361:INFO: STOP 377: refineB1 395, 14 Thr, 35 R, 438 T, 403 F, 0 Q TotalTime= 0h 25.28m RunTime= 0h 7.76m CPUload=235% bionano2b 2022-11-14 20:23:31,189:INFO: STOP 402: refineB1 420, 14 Thr, 34 R, 438 T, 404 F, 0 Q TotalTime= 0h 25.30m RunTime= 0h 6.68m CPUload=185% bionano1b 2022-11-14 20:23:32,831:INFO: STOP 332: refineB1 350, 14 Thr, 33 R, 438 T, 405 F, 0 Q TotalTime= 0h 25.36m RunTime= 0h 10.56m CPUload=257% bionano1c 2022-11-14 20:23:33,878:INFO: STOP 397: refineB1 415, 14 Thr, 32 R, 438 T, 406 F, 0 Q TotalTime= 0h 25.34m RunTime= 0h 6.70m CPUload=270% bionano1c 2022-11-14 20:23:36,439:INFO: STOP 266: refineB1 284, 14 Thr, 31 R, 438 T, 407 F, 0 Q TotalTime= 0h 25.45m RunTime= 0h 12.77m CPUload=209% bionano2b 2022-11-14 20:23:39,881:INFO: STOP 16: refineB1 16, 56 Thr, 30 R, 438 T, 408 F, 0 Q TotalTime= 0h 26.48m RunTime= 0h 26.34m CPUload=845% saphyr1b 2022-11-14 20:23:39,962:INFO: STOP 434: refineB1 182, 14 Thr, 29 R, 438 T, 409 F, 0 Q TotalTime= 0h 25.43m RunTime= 0h 4.77m CPUload=317% bionano1c 2022-11-14 20:23:40,042:INFO: STOP 411: refineB1 429, 14 Thr, 28 R, 438 T, 410 F, 0 Q TotalTime= 0h 25.44m RunTime= 0h 5.88m CPUload=282% bionano1c 2022-11-14 20:23:40,112:INFO: STOP 398: refineB1 416, 14 Thr, 27 R, 438 T, 411 F, 0 Q TotalTime= 0h 25.45m RunTime= 0h 6.83m CPUload=172% bionano1b 2022-11-14 20:23:42,261:INFO: STOP 359: refineB1 377, 14 Thr, 26 R, 438 T, 412 F, 0 Q TotalTime= 0h 25.50m RunTime= 0h 9.42m CPUload=228% bionano1b 2022-11-14 20:23:42,684:INFO: STOP 415: refineB1 433, 14 Thr, 25 R, 438 T, 413 F, 0 Q TotalTime= 0h 25.48m RunTime= 0h 5.74m CPUload=581% bionano1d 2022-11-14 20:23:44,723:INFO: STOP 392: refineB1 410, 14 Thr, 24 R, 438 T, 414 F, 0 Q TotalTime= 0h 25.53m RunTime= 0h 7.06m CPUload=284% bionano2b 2022-11-14 20:23:45,546:INFO: STOP 376: refineB1 394, 14 Thr, 23 R, 438 T, 415 F, 0 Q TotalTime= 0h 25.55m RunTime= 0h 8.02m CPUload=269% bionano2b 2022-11-14 20:23:45,593:INFO: STOP 9: refineB1 9, 56 Thr, 22 R, 438 T, 416 F, 0 Q TotalTime= 0h 26.58m RunTime= 0h 26.55m CPUload=993% bionano2b 2022-11-14 20:23:45,718:INFO: STOP 403: refineB1 421, 14 Thr, 21 R, 438 T, 417 F, 0 Q TotalTime= 0h 25.54m RunTime= 0h 6.50m CPUload=287% saphyr1b 2022-11-14 20:23:47,413:INFO: STOP 341: refineB1 359, 14 Thr, 20 R, 438 T, 418 F, 0 Q TotalTime= 0h 25.60m RunTime= 0h 10.40m CPUload=235% bionano2d 2022-11-14 20:23:54,084:INFO: STOP 8: refineB1 8, 56 Thr, 19 R, 438 T, 419 F, 0 Q TotalTime= 0h 26.72m RunTime= 0h 26.69m CPUload=1088% saphyr1b 2022-11-14 20:23:55,128:INFO: STOP 13: refineB1 13, 56 Thr, 18 R, 438 T, 420 F, 0 Q TotalTime= 0h 26.74m RunTime= 0h 26.61m CPUload=1066% bionano1c 2022-11-14 20:23:56,017:INFO: STOP 410: refineB1 428, 14 Thr, 17 R, 438 T, 421 F, 0 Q TotalTime= 0h 25.71m RunTime= 0h 6.21m CPUload=331% saphyr1b 2022-11-14 20:24:04,278:INFO: STOP 414: refineB1 432, 14 Thr, 16 R, 438 T, 422 F, 0 Q TotalTime= 0h 25.84m RunTime= 0h 6.09m CPUload=344% bionano1c 2022-11-14 20:24:04,325:INFO: STOP 399: refineB1 417, 14 Thr, 15 R, 438 T, 423 F, 0 Q TotalTime= 0h 25.85m RunTime= 0h 7.22m CPUload=239% bionano1b 2022-11-14 20:24:07,291:INFO: STOP 401: refineB1 419, 14 Thr, 14 R, 438 T, 424 F, 0 Q TotalTime= 0h 25.90m RunTime= 0h 7.30m CPUload=219% bionano1b 2022-11-14 20:24:14,424:INFO: STOP 381: refineB1 399, 14 Thr, 13 R, 438 T, 425 F, 0 Q TotalTime= 0h 26.03m RunTime= 0h 8.37m CPUload=216% bionano2d 2022-11-14 20:24:22,436:INFO: STOP 394: refineB1 412, 14 Thr, 12 R, 438 T, 426 F, 0 Q TotalTime= 0h 26.15m RunTime= 0h 7.52m CPUload=520% bionano1c 2022-11-14 20:24:23,357:INFO: STOP 400: refineB1 418, 14 Thr, 11 R, 438 T, 427 F, 0 Q TotalTime= 0h 26.17m RunTime= 0h 7.56m CPUload=244% bionano1b 2022-11-14 20:24:24,333:INFO: STOP 387: refineB1 405, 14 Thr, 10 R, 438 T, 428 F, 0 Q TotalTime= 0h 26.19m RunTime= 0h 8.40m CPUload=267% bionano1b 2022-11-14 20:25:03,648:INFO: STOP 404: refineB1 422, 14 Thr, 9 R, 438 T, 429 F, 0 Q TotalTime= 0h 26.84m RunTime= 0h 8.01m CPUload=279% bionano2d 2022-11-14 20:25:21,512:INFO: STOP 413: refineB1 431, 14 Thr, 8 R, 438 T, 430 F, 0 Q TotalTime= 0h 27.13m RunTime= 0h 7.55m CPUload=273% bionano1b 2022-11-14 20:25:30,805:INFO: STOP 417: refineB1 435, 14 Thr, 7 R, 438 T, 431 F, 0 Q TotalTime= 0h 27.28m RunTime= 0h 7.46m CPUload=278% bionano2d 2022-11-14 20:25:42,855:INFO: STOP 425: refineB1 175, 14 Thr, 6 R, 438 T, 432 F, 0 Q TotalTime= 0h 27.48m RunTime= 0h 7.38m CPUload=320% bionano2d 2022-11-14 20:25:45,903:INFO: STOP 433: refineB1 181, 14 Thr, 5 R, 438 T, 433 F, 0 Q TotalTime= 0h 27.53m RunTime= 0h 7.20m CPUload=322% bionano2d 2022-11-14 20:25:58,928:INFO: STOP 420: refineB1 438, 14 Thr, 4 R, 438 T, 434 F, 0 Q TotalTime= 0h 27.75m RunTime= 0h 7.81m CPUload=301% bionano2d 2022-11-14 20:26:04,587:INFO: STOP 14: refineB1 14, 56 Thr, 3 R, 438 T, 435 F, 0 Q TotalTime= 0h 28.89m RunTime= 0h 28.87m CPUload=871% bionano1b 2022-11-14 20:26:17,998:INFO: STOP 15: refineB1 15, 56 Thr, 2 R, 438 T, 436 F, 0 Q TotalTime= 0h 29.12m RunTime= 0h 29.09m CPUload=801% bionano2d 2022-11-14 20:26:24,642:INFO: STOP 6: refineB1 6, 56 Thr, 1 R, 438 T, 437 F, 0 Q TotalTime= 0h 29.23m RunTime= 0h 29.20m CPUload=1128% bionano1b 2022-11-14 20:26:32,011:INFO: STOP 7: refineB1 7, 56 Thr, 0 R, 438 T, 438 F, 0 Q TotalTime= 0h 29.35m RunTime= 0h 29.32m CPUload=1000% bionano2d 2022-11-14 20:26:32,012:INFO: Finished Multi-Threaded Process: refineB1 2022-11-14 20:26:32,303:INFO: refineB1 1 completed in: 869.7s Result Found refineB1 2 completed in: 862.6s Result Found refineB1 3 completed in: 751.1s Result Found refineB1 4 completed in: 751.1s Result Found refineB1 5 completed in: 1442.6s Result Found refineB1 6 completed in: 1753.8s Result Found refineB1 7 completed in: 1761.1s Result Found refineB1 8 completed in: 1603.2s Result Found refineB1 9 completed in: 1594.7s Result Found refineB1 10 completed in: 1577.3s Result Found refineB1 11 completed in: 1451.4s Result Found refineB1 12 completed in: 1454.0s Result Found refineB1 13 completed in: 1604.1s Result Found refineB1 14 completed in: 1733.5s Result Found refineB1 15 completed in: 1746.9s Result Found refineB1 16 completed in: 1588.8s Result Found refineB1 17 completed in: 1540.5s Result Found refineB1 18 completed in: 1563.1s Result Found refineB1 19 completed in: 1335.7s Result Found refineB1 20 completed in: 1316.1s Result Found refineB1 21 completed in: 1304.4s Result Found refineB1 22 completed in: 1176.4s Result Found refineB1 23 completed in: 1179.4s Result Found refineB1 24 completed in: 1337.7s Result Found refineB1 25 completed in: 850.7s Result Found refineB1 26 completed in: 1110.6s Result Found refineB1 27 completed in: 992.8s Result Found refineB1 28 completed in: 1119.4s Result Found refineB1 29 completed in: 817.0s Result Found refineB1 30 completed in: 839.5s Result Found refineB1 31 completed in: 596.5s Result Found refineB1 32 completed in: 820.7s Result Found refineB1 33 completed in: 785.9s Result Found refineB1 34 completed in: 652.8s Result Found refineB1 44 completed in: 969.9s Result Found refineB1 35 completed in: 721.2s Result Found refineB1 45 completed in: 824.3s Result Found refineB1 53 completed in: 766.0s Result Found refineB1 36 completed in: 574.5s Result Found refineB1 54 completed in: 769.9s Result Found refineB1 46 completed in: 842.9s Result Found refineB1 55 completed in: 793.5s Result Found refineB1 37 completed in: 635.2s Result Found refineB1 56 completed in: 1026.0s Result Found refineB1 47 completed in: 656.7s Result Found refineB1 48 completed in: 757.7s Result Found refineB1 57 completed in: 910.6s Result Found refineB1 87 completed in: 745.5s Result Found refineB1 88 completed in: 998.6s Result Found refineB1 89 completed in: 546.9s Result Found refineB1 38 completed in: 410.8s Result Found refineB1 90 completed in: 823.0s Result Found refineB1 91 completed in: 1166.2s Result Found refineB1 39 completed in: 874.2s Result Found refineB1 58 completed in: 740.2s Result Found refineB1 92 completed in: 845.2s Result Found refineB1 93 completed in: 902.4s Result Found refineB1 94 completed in: 752.3s Result Found refineB1 95 completed in: 961.6s Result Found refineB1 96 completed in: 772.3s Result Found refineB1 97 completed in: 981.3s Result Found refineB1 59 completed in: 744.0s Result Found refineB1 98 completed in: 852.3s Result Found refineB1 49 completed in: 563.8s Result Found refineB1 99 completed in: 1095.7s Result Found refineB1 100 completed in: 723.4s Result Found refineB1 185 completed in: 1003.5s Result Found refineB1 60 completed in: 984.3s Result Found refineB1 101 completed in: 964.6s Result Found refineB1 186 completed in: 1105.5s Result Found refineB1 102 completed in: 1024.3s Result Found refineB1 187 completed in: 940.9s Result Found refineB1 103 completed in: 779.7s Result Found refineB1 40 completed in: 459.4s Result Found refineB1 188 completed in: 898.2s Result Found refineB1 104 completed in: 795.3s Result Found refineB1 105 completed in: 984.1s Result Found refineB1 189 completed in: 954.3s Result Found refineB1 106 completed in: 851.7s Result Found refineB1 190 completed in: 659.7s Result Found refineB1 107 completed in: 668.2s Result Found refineB1 191 completed in: 898.0s Result Found refineB1 61 completed in: 650.1s Result Found refineB1 192 completed in: 829.4s Result Found refineB1 108 completed in: 783.3s Result Found refineB1 193 completed in: 883.8s Result Found refineB1 109 completed in: 829.3s Result Found refineB1 194 completed in: 1359.0s Result Found refineB1 110 completed in: 858.8s Result Found refineB1 195 completed in: 684.8s Result Found refineB1 111 completed in: 929.0s Result Found refineB1 41 completed in: 798.5s Result Found refineB1 112 completed in: 810.1s Result Found refineB1 196 completed in: 918.6s Result Found refineB1 113 completed in: 1113.6s Result Found refineB1 197 completed in: 915.0s Result Found refineB1 62 completed in: 701.3s Result Found refineB1 114 completed in: 623.4s Result Found refineB1 198 completed in: 1164.9s Result Found refineB1 115 completed in: 1224.1s Result Found refineB1 199 completed in: 663.2s Result Found refineB1 116 completed in: 726.1s Result Found refineB1 200 completed in: 992.8s Result Found refineB1 117 completed in: 839.8s Result Found refineB1 63 completed in: 786.4s Result Found refineB1 118 completed in: 1119.1s Result Found refineB1 201 completed in: 742.4s Result Found refineB1 119 completed in: 821.0s Result Found refineB1 202 completed in: 1110.3s Result Found refineB1 203 completed in: 692.5s Result Found refineB1 120 completed in: 778.4s Result Found refineB1 204 completed in: 854.2s Result Found refineB1 64 completed in: 805.5s Result Found refineB1 121 completed in: 982.9s Result Found refineB1 205 completed in: 1118.8s Result Found refineB1 206 completed in: 766.2s Result Found refineB1 122 completed in: 1060.3s Result Found refineB1 207 completed in: 969.6s Result Found refineB1 208 completed in: 696.3s Result Found refineB1 123 completed in: 982.7s Result Found refineB1 209 completed in: 976.1s Result Found refineB1 210 completed in: 976.1s Result Found refineB1 124 completed in: 1009.0s Result Found refineB1 211 completed in: 878.9s Result Found refineB1 125 completed in: 1038.3s Result Found refineB1 126 completed in: 721.1s Result Found refineB1 65 completed in: 708.5s Result Found refineB1 127 completed in: 773.7s Result Found refineB1 212 completed in: 1025.6s Result Found refineB1 128 completed in: 1106.6s Result Found refineB1 213 completed in: 924.2s Result Found refineB1 214 completed in: 1097.6s Result Found refineB1 215 completed in: 959.2s Result Found refineB1 129 completed in: 678.8s Result Found refineB1 216 completed in: 1152.5s Result Found refineB1 66 completed in: 643.6s Result Found refineB1 130 completed in: 816.1s Result Found refineB1 217 completed in: 882.0s Result Found refineB1 218 completed in: 945.5s Result Found refineB1 131 completed in: 827.4s Result Found refineB1 219 completed in: 934.2s Result Found refineB1 132 completed in: 792.9s Result Found refineB1 133 completed in: 728.7s Result Found refineB1 220 completed in: 1097.2s Result Found refineB1 50 completed in: 678.4s Result Found refineB1 134 completed in: 948.7s Result Found refineB1 221 completed in: 255.4s Result Found refineB1 67 completed in: 186.7s Result Found refineB1 135 completed in: 366.1s Result Found refineB1 136 completed in: 460.9s Result Found refineB1 222 completed in: 630.1s Result Found refineB1 137 completed in: 573.5s Result Found refineB1 223 completed in: 415.8s Result Found refineB1 138 completed in: 393.1s Result Found refineB1 224 completed in: 424.7s Result Found refineB1 139 completed in: 356.6s Result Found refineB1 68 completed in: 496.4s Result Found refineB1 42 completed in: 424.6s Result Found refineB1 225 completed in: 551.4s Result Found refineB1 140 completed in: 482.9s Result Found refineB1 226 completed in: 519.4s Result Found refineB1 141 completed in: 473.9s Result Found refineB1 227 completed in: 513.9s Result Found refineB1 142 completed in: 491.7s Result Found refineB1 143 completed in: 948.1s Result Found refineB1 69 completed in: 852.4s Result Found refineB1 228 completed in: 752.4s Result Found refineB1 144 completed in: 1102.5s Result Found refineB1 229 completed in: 905.5s Result Found refineB1 145 completed in: 837.5s Result Found refineB1 230 completed in: 822.5s Result Found refineB1 146 completed in: 1338.6s Result Found refineB1 231 completed in: 898.4s Result Found refineB1 147 completed in: 833.7s Result Found refineB1 70 completed in: 855.8s Result Found refineB1 232 completed in: 799.4s Result Found refineB1 148 completed in: 984.1s Result Found refineB1 149 completed in: 719.2s Result Found refineB1 233 completed in: 971.0s Result Found refineB1 150 completed in: 1277.4s Result Found refineB1 51 completed in: 977.5s Result Found refineB1 71 completed in: 1179.4s Result Found refineB1 151 completed in: 1336.3s Result Found refineB1 234 completed in: 1096.0s Result Found refineB1 235 completed in: 1463.1s Result Found refineB1 152 completed in: 1453.1s Result Found refineB1 72 completed in: 1232.3s Result Found refineB1 236 completed in: 1055.0s Result Found refineB1 153 completed in: 1354.0s Result Found refineB1 237 completed in: 1383.6s Result Found refineB1 73 completed in: 1291.4s Result Found refineB1 154 completed in: 1404.0s Result Found refineB1 238 completed in: 1517.8s Result Found refineB1 155 completed in: 1312.2s Result Found refineB1 156 completed in: 1312.2s Result Found refineB1 239 completed in: 1386.8s Result Found refineB1 240 completed in: 1414.8s Result Found refineB1 157 completed in: 1226.5s Result Found refineB1 74 completed in: 1295.9s Result Found refineB1 158 completed in: 1323.1s Result Found refineB1 241 completed in: 1261.1s Result Found refineB1 159 completed in: 1476.4s Result Found refineB1 242 completed in: 1451.4s Result Found refineB1 243 completed in: 1476.7s Result Found refineB1 160 completed in: 1249.4s Result Found refineB1 244 completed in: 1416.4s Result Found refineB1 245 completed in: 1467.2s Result Found refineB1 75 completed in: 1069.8s Result Found refineB1 161 completed in: 1441.4s Result Found refineB1 246 completed in: 1368.6s Result Found refineB1 162 completed in: 1303.3s Result Found refineB1 247 completed in: 1427.9s Result Found refineB1 76 completed in: 1098.5s Result Found refineB1 163 completed in: 1472.8s Result Found refineB1 164 completed in: 1286.0s Result Found refineB1 248 completed in: 1380.0s Result Found refineB1 165 completed in: 1386.6s Result Found refineB1 77 completed in: 1169.8s Result Found refineB1 249 completed in: 1375.2s Result Found refineB1 166 completed in: 1208.5s Result Found refineB1 250 completed in: 1311.2s Result Found refineB1 78 completed in: 1168.0s Result Found refineB1 167 completed in: 1311.0s Result Found refineB1 251 completed in: 1332.8s Result Found refineB1 79 completed in: 1259.3s Result Found refineB1 252 completed in: 1344.0s Result Found refineB1 168 completed in: 1345.6s Result Found refineB1 253 completed in: 1385.3s Result Found refineB1 80 completed in: 1302.9s Result Found refineB1 169 completed in: 1240.3s Result Found refineB1 254 completed in: 1372.9s Result Found refineB1 170 completed in: 1222.8s Result Found refineB1 52 completed in: 1194.7s Result Found refineB1 255 completed in: 1375.7s Result Found refineB1 256 completed in: 1351.3s Result Found refineB1 171 completed in: 1197.2s Result Found refineB1 257 completed in: 1388.8s Result Found refineB1 43 completed in: 1062.0s Result Found refineB1 172 completed in: 1167.1s Result Found refineB1 258 completed in: 1288.6s Result Found refineB1 259 completed in: 1237.5s Result Found refineB1 260 completed in: 1251.6s Result Found refineB1 261 completed in: 1064.7s Result Found refineB1 262 completed in: 1055.9s Result Found refineB1 263 completed in: 1265.2s Result Found refineB1 264 completed in: 1070.3s Result Found refineB1 265 completed in: 1401.5s Result Found refineB1 266 completed in: 1219.6s Result Found refineB1 267 completed in: 1227.5s Result Found refineB1 268 completed in: 1423.7s Result Found refineB1 269 completed in: 1313.8s Result Found refineB1 270 completed in: 1313.8s Result Found refineB1 271 completed in: 1239.4s Result Found refineB1 272 completed in: 1185.2s Result Found refineB1 273 completed in: 1204.1s Result Found refineB1 274 completed in: 1279.8s Result Found refineB1 275 completed in: 1285.8s Result Found refineB1 276 completed in: 1187.6s Result Found refineB1 277 completed in: 1133.0s Result Found refineB1 278 completed in: 795.1s Result Found refineB1 279 completed in: 1351.9s Result Found refineB1 280 completed in: 1420.0s Result Found refineB1 281 completed in: 1382.6s Result Found refineB1 282 completed in: 1266.5s Result Found refineB1 283 completed in: 1365.7s Result Found refineB1 284 completed in: 1527.2s Result Found refineB1 285 completed in: 1441.3s Result Found refineB1 286 completed in: 1318.5s Result Found refineB1 287 completed in: 1372.9s Result Found refineB1 288 completed in: 1283.2s Result Found refineB1 289 completed in: 995.5s Result Found refineB1 290 completed in: 1332.6s Result Found refineB1 291 completed in: 1418.4s Result Found refineB1 292 completed in: 1198.1s Result Found refineB1 293 completed in: 1045.4s Result Found refineB1 294 completed in: 1314.6s Result Found refineB1 295 completed in: 1354.5s Result Found refineB1 296 completed in: 1327.2s Result Found refineB1 297 completed in: 1029.1s Result Found refineB1 298 completed in: 1192.0s Result Found refineB1 299 completed in: 1446.4s Result Found refineB1 300 completed in: 1473.2s Result Found refineB1 301 completed in: 1400.1s Result Found refineB1 302 completed in: 1284.8s Result Found refineB1 303 completed in: 1328.7s Result Found refineB1 304 completed in: 1389.7s Result Found refineB1 305 completed in: 1355.7s Result Found refineB1 306 completed in: 1088.5s Result Found refineB1 307 completed in: 1131.9s Result Found refineB1 308 completed in: 1328.6s Result Found refineB1 309 completed in: 1310.1s Result Found refineB1 310 completed in: 1217.9s Result Found refineB1 311 completed in: 1215.4s Result Found refineB1 312 completed in: 1258.7s Result Found refineB1 313 completed in: 1225.6s Result Found refineB1 314 completed in: 1215.2s Result Found refineB1 315 completed in: 1306.1s Result Found refineB1 316 completed in: 1254.0s Result Found refineB1 317 completed in: 1204.9s Result Found refineB1 318 completed in: 1191.3s Result Found refineB1 319 completed in: 1346.3s Result Found refineB1 320 completed in: 1267.3s Result Found refineB1 321 completed in: 1364.4s Result Found refineB1 322 completed in: 1296.1s Result Found refineB1 323 completed in: 1230.1s Result Found refineB1 324 completed in: 1292.0s Result Found refineB1 325 completed in: 1279.9s Result Found refineB1 326 completed in: 1227.6s Result Found refineB1 327 completed in: 1317.1s Result Found refineB1 328 completed in: 1309.4s Result Found refineB1 329 completed in: 1251.2s Result Found refineB1 330 completed in: 1275.5s Result Found refineB1 331 completed in: 1281.7s Result Found refineB1 332 completed in: 1271.1s Result Found refineB1 333 completed in: 1257.9s Result Found refineB1 334 completed in: 1257.7s Result Found refineB1 335 completed in: 1262.2s Result Found refineB1 336 completed in: 1363.8s Result Found refineB1 337 completed in: 1423.4s Result Found refineB1 338 completed in: 1460.7s Result Found refineB1 339 completed in: 1384.7s Result Found refineB1 340 completed in: 1471.8s Result Found refineB1 341 completed in: 1497.8s Result Found refineB1 342 completed in: 1198.5s Result Found refineB1 343 completed in: 1502.0s Result Found refineB1 344 completed in: 1377.6s Result Found refineB1 345 completed in: 1165.9s Result Found refineB1 346 completed in: 1419.9s Result Found refineB1 347 completed in: 1373.6s Result Found refineB1 348 completed in: 1414.2s Result Found refineB1 349 completed in: 1474.4s Result Found refineB1 350 completed in: 1521.4s Result Found refineB1 351 completed in: 1390.5s Result Found refineB1 352 completed in: 1347.5s Result Found refineB1 353 completed in: 1429.1s Result Found refineB1 354 completed in: 1100.5s Result Found refineB1 355 completed in: 1430.0s Result Found refineB1 356 completed in: 1368.9s Result Found refineB1 357 completed in: 1442.5s Result Found refineB1 358 completed in: 1408.0s Result Found refineB1 359 completed in: 1535.7s Result Found refineB1 360 completed in: 1506.8s Result Found refineB1 361 completed in: 1173.3s Result Found refineB1 362 completed in: 1423.6s Result Found refineB1 363 completed in: 1334.3s Result Found refineB1 364 completed in: 1312.0s Result Found refineB1 365 completed in: 1482.4s Result Found refineB1 366 completed in: 1467.1s Result Found refineB1 367 completed in: 1353.4s Result Found refineB1 368 completed in: 1379.5s Result Found refineB1 369 completed in: 1362.6s Result Found refineB1 370 completed in: 1235.3s Result Found refineB1 371 completed in: 1443.9s Result Found refineB1 372 completed in: 1490.1s Result Found refineB1 373 completed in: 1507.0s Result Found refineB1 374 completed in: 1491.9s Result Found refineB1 375 completed in: 1461.1s Result Found refineB1 376 completed in: 1454.3s Result Found refineB1 377 completed in: 1530.1s Result Found refineB1 378 completed in: 1487.3s Result Found refineB1 379 completed in: 1410.8s Result Found refineB1 380 completed in: 1393.4s Result Found refineB1 381 completed in: 1262.6s Result Found refineB1 382 completed in: 1212.3s Result Found refineB1 383 completed in: 1406.0s Result Found refineB1 384 completed in: 1262.5s Result Found refineB1 385 completed in: 1467.3s Result Found refineB1 386 completed in: 1422.8s Result Found refineB1 387 completed in: 1408.2s Result Found refineB1 388 completed in: 1458.2s Result Found refineB1 389 completed in: 1303.2s Result Found refineB1 390 completed in: 1271.0s Result Found refineB1 391 completed in: 1377.3s Result Found refineB1 392 completed in: 1497.9s Result Found refineB1 393 completed in: 1478.1s Result Found refineB1 394 completed in: 1532.9s Result Found refineB1 395 completed in: 1516.6s Result Found refineB1 396 completed in: 1494.2s Result Found refineB1 397 completed in: 1312.6s Result Found refineB1 398 completed in: 1402.9s Result Found refineB1 399 completed in: 1561.6s Result Found refineB1 400 completed in: 1510.4s Result Found refineB1 401 completed in: 1455.2s Result Found refineB1 402 completed in: 1497.0s Result Found refineB1 403 completed in: 1502.7s Result Found refineB1 404 completed in: 1490.3s Result Found refineB1 405 completed in: 1571.3s Result Found refineB1 406 completed in: 1496.9s Result Found refineB1 407 completed in: 1328.3s Result Found refineB1 408 completed in: 1384.5s Result Found refineB1 409 completed in: 1302.4s Result Found refineB1 410 completed in: 1531.6s Result Found refineB1 411 completed in: 1406.2s Result Found refineB1 412 completed in: 1569.3s Result Found refineB1 413 completed in: 1497.2s Result Found refineB1 414 completed in: 1506.6s Result Found refineB1 415 completed in: 1520.6s Result Found refineB1 416 completed in: 1526.8s Result Found refineB1 417 completed in: 1551.0s Result Found refineB1 418 completed in: 1570.0s Result Found refineB1 419 completed in: 1554.0s Result Found refineB1 420 completed in: 1517.8s Result Found refineB1 421 completed in: 1532.3s Result Found refineB1 422 completed in: 1610.2s Result Found refineB1 423 completed in: 1349.8s Result Found refineB1 424 completed in: 1498.5s Result Found refineB1 425 completed in: 1458.6s Result Found refineB1 426 completed in: 1478.4s Result Found refineB1 427 completed in: 1348.1s Result Found refineB1 428 completed in: 1542.5s Result Found refineB1 429 completed in: 1526.5s Result Found refineB1 430 completed in: 1348.0s Result Found refineB1 431 completed in: 1627.9s Result Found refineB1 432 completed in: 1550.6s Result Found refineB1 433 completed in: 1529.0s Result Found refineB1 434 completed in: 1435.3s Result Found refineB1 435 completed in: 1637.1s Result Found refineB1 436 completed in: 1502.1s Result Found refineB1 437 completed in: 1492.3s Result Found refineB1 438 completed in: 1665.1s Result Found refineB1 81 completed in: 1361.6s Result Found refineB1 173 completed in: 1470.0s Result Found refineB1 174 completed in: 1426.1s Result Found refineB1 82 completed in: 1458.0s Result Found refineB1 175 completed in: 1648.9s Result Found refineB1 176 completed in: 1380.9s Result Found refineB1 83 completed in: 1419.7s Result Found refineB1 177 completed in: 1435.8s Result Found refineB1 178 completed in: 1507.6s Result Found refineB1 179 completed in: 1477.5s Result Found refineB1 180 completed in: 1439.3s Result Found refineB1 84 completed in: 1497.5s Result Found refineB1 181 completed in: 1651.6s Result Found refineB1 182 completed in: 1525.6s Result Found refineB1 85 completed in: 1409.3s Result Found refineB1 183 completed in: 1430.5s Result Found refineB1 86 completed in: 1434.4s Result Found refineB1 184 completed in: 1504.7s Result Found Completed 438 jobs on 56 threads Clock time: 0h 29.36m CPU time : 142h 15.15m Begin machine parsable segment for: refineB1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineB1_contig4.cmap 869.73955 21048.63 303.64 14:26.56 2464% 1619924 Mon Nov 14 14:24:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig9.cmap 862.55122 19752.32 288.36 14:19.63 2331% 1197980 Mon Nov 14 14:24:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig12.cmap 751.11978 18134.97 247.94 12:26.06 2463% 1117340 Mon Nov 14 14:22:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig5.cmap 751.09244 17067.27 248.94 12:27.39 2316% 1291064 Mon Nov 14 14:22:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1.cmap 1442.55828 16344.54 261.05 24:00.87 1152% 2114576 Mon Nov 14 14:21:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig8.cmap 1753.79941 19576.89 187.96 29:11.49 1128% 1147240 Mon Nov 14 14:39:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig16.cmap 1761.14319 17432.67 162.01 29:19.07 1000% 920860 Mon Nov 14 14:39:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig2.cmap 1603.19014 17262.77 157.32 26:40.84 1088% 1686652 Mon Nov 14 14:17:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig14.cmap 1594.67475 15689.50 126.34 26:31.98 993% 908380 Mon Nov 14 14:36:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig6.cmap 1577.33179 16377.12 161.91 26:14.43 1050% 1460348 Mon Nov 14 14:46:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig3.cmap 1451.39979 13063.76 109.36 24:08.13 909% 1476936 Mon Nov 14 14:34:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig20.cmap 1453.98115 15331.40 123.83 24:11.31 1064% 806812 Mon Nov 14 14:37:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig11.cmap 1604.10906 16872.83 147.89 26:35.67 1066% 1198768 Mon Nov 14 14:36:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig10.cmap 1733.54251 14968.07 118.32 28:50.39 871% 1185896 Mon Nov 14 14:39:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig21.cmap 1746.92834 13880.38 100.31 29:03.23 801% 764616 Mon Nov 14 14:39:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig7.cmap 1588.78660 13228.34 127.72 26:20.49 845% 1261908 Mon Nov 14 14:17:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig17.cmap 1540.48109 12655.79 91.66 25:34.32 830% 766832 Mon Nov 14 14:35:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig13.cmap 1563.09421 13134.37 112.04 25:57.59 850% 1028260 Mon Nov 14 14:45:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig19.cmap 1335.74879 12365.19 113.98 22:09.08 938% 739556 Mon Nov 14 14:32:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig15.cmap 1316.07827 8429.39 79.22 21:46.38 651% 977440 Mon Nov 14 14:32:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig22.cmap 1304.44386 9423.72 80.90 21:37.32 732% 618724 Mon Nov 14 14:35:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig26.cmap 1176.44073 8138.47 75.94 19:27.04 703% 550260 Mon Nov 14 14:29:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig23.cmap 1179.39014 7255.28 39.01 19:32.28 622% 551340 Mon Nov 14 14:29:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig27.cmap 1337.68369 6526.62 20.00 22:12.76 491% 473160 Mon Nov 14 14:32:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig18.cmap 850.69980 4801.93 24.37 14:00.38 574% 683348 Mon Nov 14 14:04:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig33.cmap 1110.63110 6833.88 31.57 18:22.61 622% 391508 Mon Nov 14 14:28:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig31.cmap 992.84887 5384.67 30.49 16:24.07 550% 552188 Mon Nov 14 14:36:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig28.cmap 1119.35931 5132.19 16.24 18:34.88 461% 412288 Mon Nov 14 14:28:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig24.cmap 816.97128 4672.47 27.43 13:28.28 581% 561252 Mon Nov 14 14:23:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig29.cmap 839.49583 4308.45 20.80 13:49.89 521% 390768 Mon Nov 14 14:24:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig25.cmap 596.50367 3157.89 17.55 9:46.61 541% 508928 Mon Nov 14 14:00:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig34.cmap 820.69935 4315.31 22.43 13:32.55 533% 328804 Mon Nov 14 14:23:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig32.cmap 785.91883 4386.41 25.47 12:58.70 566% 455356 Mon Nov 14 14:26:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig30.cmap 652.78370 3279.91 22.18 10:45.81 511% 438136 Mon Nov 14 14:30:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig43.cmap 969.88473 2448.24 7.28 16:06.02 254% 287192 Mon Nov 14 14:26:22 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig37.cmap 721.23690 3416.64 11.29 11:51.38 481% 268300 Mon Nov 14 14:22:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig36.cmap 824.34924 2711.04 12.00 13:33.03 334% 295924 Mon Nov 14 14:23:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig51.cmap 765.97469 1922.86 13.71 12:34.00 256% 235492 Mon Nov 14 14:22:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig41.cmap 574.46019 1725.08 5.54 9:26.66 305% 215880 Mon Nov 14 14:19:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig69.cmap 769.90831 1952.18 12.09 12:40.10 258% 305804 Mon Nov 14 14:03:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig61.cmap 842.92077 2045.36 7.15 13:58.15 244% 278332 Mon Nov 14 14:24:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig52.cmap 793.48416 2237.51 13.12 13:04.86 286% 309392 Mon Nov 14 14:23:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig38.cmap 635.23272 2729.78 9.43 10:23.05 439% 247500 Mon Nov 14 14:20:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig72.cmap 1026.02025 2313.32 12.92 16:59.46 228% 227348 Mon Nov 14 14:27:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig58.cmap 656.72317 2192.79 12.14 10:44.55 342% 234116 Mon Nov 14 14:21:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig116.cmap 757.71429 1918.29 7.69 12:31.74 256% 234596 Mon Nov 14 14:22:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig59.cmap 910.57160 2083.86 14.52 15:03.46 232% 208064 Mon Nov 14 14:28:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1316.cmap 745.49868 1222.79 8.87 12:15.03 167% 163064 Mon Nov 14 14:03:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig89.cmap 998.59688 2010.36 14.81 16:29.95 204% 196956 Mon Nov 14 14:36:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig969.cmap 546.90386 1073.12 3.98 9:00.93 199% 175996 Mon Nov 14 14:19:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig35.cmap 410.80694 1579.55 6.12 6:39.04 397% 261120 Mon Nov 14 14:17:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig589.cmap 822.96590 1477.48 10.56 13:36.95 182% 155892 Mon Nov 14 14:23:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig583.cmap 1166.24718 2069.09 15.17 19:18.57 179% 154892 Mon Nov 14 14:29:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig44.cmap 874.22831 2703.24 6.86 14:26.25 312% 213364 Mon Nov 14 14:24:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig75.cmap 740.23125 1632.98 10.15 12:11.99 224% 175788 Mon Nov 14 14:25:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig840.cmap 845.19693 1764.35 10.45 13:52.30 213% 164732 Mon Nov 14 14:04:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1076.cmap 902.36799 1440.77 10.00 14:54.78 162% 162092 Mon Nov 14 14:34:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig351.cmap 752.34824 1477.32 4.88 12:27.26 198% 185252 Mon Nov 14 14:22:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig543.cmap 961.64280 1714.41 11.60 15:51.95 181% 185420 Mon Nov 14 14:26:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig377.cmap 772.29197 1304.19 10.60 12:44.76 171% 180940 Mon Nov 14 14:23:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig429.cmap 981.34916 1586.26 9.89 16:12.63 164% 178832 Mon Nov 14 14:26:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig82.cmap 744.04476 1817.48 6.27 12:16.80 247% 191908 Mon Nov 14 14:22:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig694.cmap 852.28060 1461.30 11.46 14:04.14 174% 198932 Mon Nov 14 14:27:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig85.cmap 563.83972 1689.76 8.88 9:16.25 305% 245736 Mon Nov 14 14:00:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig629.cmap 1095.69546 2292.12 14.83 18:08.47 211% 163648 Mon Nov 14 14:38:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig726.cmap 723.39988 1505.08 5.05 11:58.45 210% 159564 Mon Nov 14 14:22:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1036.cmap 1003.53095 1812.71 14.49 16:33.81 183% 185800 Mon Nov 14 14:26:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig73.cmap 984.32089 2516.53 13.76 16:12.24 260% 233336 Mon Nov 14 14:26:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig639.cmap 964.59526 1815.18 14.00 15:56.52 191% 185860 Mon Nov 14 14:26:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1147.cmap 1105.51093 1690.26 10.44 18:17.60 154% 165384 Mon Nov 14 14:28:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig456.cmap 1024.25892 2499.96 8.65 16:56.36 246% 185020 Mon Nov 14 14:27:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1191.cmap 940.86996 1413.51 12.04 15:34.06 152% 176064 Mon Nov 14 14:29:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig484.cmap 779.72123 1488.14 9.80 12:51.78 194% 195940 Mon Nov 14 14:03:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig40.cmap 459.39492 1851.18 7.14 7:30.63 412% 211280 Mon Nov 14 14:27:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig815.cmap 898.23545 1817.24 5.91 14:55.33 203% 197960 Mon Nov 14 14:25:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig769.cmap 795.25070 1562.31 11.66 13:04.70 200% 163972 Mon Nov 14 14:23:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig697.cmap 984.06196 1938.75 11.64 16:13.85 200% 177436 Mon Nov 14 14:26:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig831.cmap 954.28759 1533.25 13.66 15:47.15 163% 194508 Mon Nov 14 14:26:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig541.cmap 851.70869 1316.15 8.30 14:04.96 156% 184508 Mon Nov 14 14:24:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig590.cmap 659.72839 1421.56 4.86 10:55.68 217% 173332 Mon Nov 14 14:21:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig890.cmap 668.22391 1145.29 8.84 11:00.05 174% 177224 Mon Nov 14 14:24:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig979.cmap 898.04073 1370.44 10.34 14:46.91 155% 154044 Mon Nov 14 14:05:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig288.cmap 650.06872 1346.72 8.21 10:44.01 210% 170276 Mon Nov 14 14:30:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig477.cmap 829.39389 1568.55 6.09 13:45.40 190% 177140 Mon Nov 14 14:24:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig431.cmap 783.26859 1532.66 11.11 12:52.06 199% 186844 Mon Nov 14 14:23:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig490.cmap 883.83369 1176.41 8.93 14:29.86 136% 192096 Mon Nov 14 14:24:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig794.cmap 829.30790 1492.77 11.02 13:42.02 182% 159892 Mon Nov 14 14:24:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig482.cmap 1358.97279 2162.61 17.22 22:32.21 161% 217716 Mon Nov 14 14:32:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig958.cmap 858.82368 1977.93 6.90 14:13.91 232% 185044 Mon Nov 14 14:24:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig925.cmap 684.84000 705.51 8.08 11:15.76 105% 156276 Mon Nov 14 14:25:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig500.cmap 929.03409 1503.33 11.23 15:20.50 164% 151544 Mon Nov 14 14:06:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig42.cmap 798.54802 2135.12 6.86 13:15.43 269% 248228 Mon Nov 14 14:23:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig817.cmap 810.06539 1325.52 9.57 13:21.88 166% 184488 Mon Nov 14 14:33:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig848.cmap 918.64355 1471.42 13.99 15:09.32 163% 181428 Mon Nov 14 14:25:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig122.cmap 1113.61610 2305.63 15.09 18:26.53 209% 184040 Mon Nov 14 14:28:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig758.cmap 914.96057 1323.98 10.91 15:08.54 146% 154736 Mon Nov 14 14:25:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig522.cmap 701.34288 1609.85 8.80 11:32.45 233% 154040 Mon Nov 14 14:21:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1353.cmap 623.44201 1374.20 4.41 10:18.97 222% 163756 Mon Nov 14 14:20:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1009.cmap 1164.87029 2696.03 14.19 19:16.74 234% 168692 Mon Nov 14 14:33:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig87.cmap 1224.11253 2506.46 18.62 20:16.22 207% 264644 Mon Nov 14 14:11:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig388.cmap 663.15521 1199.79 5.41 11:00.69 182% 153228 Mon Nov 14 14:21:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1175.cmap 726.14586 920.35 8.00 12:00.62 128% 165488 Mon Nov 14 14:31:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig830.cmap 992.83629 1718.49 14.28 16:22.48 176% 168680 Mon Nov 14 14:26:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig357.cmap 839.82065 1548.05 10.07 13:49.04 187% 165492 Mon Nov 14 14:24:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig63.cmap 786.40166 1727.92 10.38 12:58.13 223% 213268 Mon Nov 14 14:23:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig81.cmap 1119.08033 2235.80 13.45 18:29.42 202% 202900 Mon Nov 14 14:28:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig860.cmap 742.38019 1609.83 5.99 12:16.30 219% 170428 Mon Nov 14 14:22:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig497.cmap 820.99802 1452.04 10.91 13:30.55 180% 176208 Mon Nov 14 14:27:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig403.cmap 1110.25500 1617.93 13.34 18:22.87 147% 168568 Mon Nov 14 14:09:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1396.cmap 692.47114 1282.65 4.63 11:29.42 186% 157280 Mon Nov 14 14:21:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig164.cmap 778.35087 1413.02 9.93 12:50.02 184% 189264 Mon Nov 14 14:32:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig109.cmap 854.15371 1272.31 10.34 14:03.84 152% 173164 Mon Nov 14 14:24:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig103.cmap 805.46494 1636.88 10.99 13:16.12 206% 187060 Mon Nov 14 14:23:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig753.cmap 982.85431 2391.84 15.71 16:11.95 247% 179832 Mon Nov 14 14:26:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1228.cmap 1118.77226 1595.09 11.96 18:25.15 145% 179208 Mon Nov 14 14:28:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig566.cmap 766.18296 1711.92 5.43 12:38.73 226% 162072 Mon Nov 14 14:22:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig704.cmap 1060.26293 1943.04 15.38 17:30.27 186% 180136 Mon Nov 14 14:31:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig524.cmap 969.64563 1514.45 13.11 15:58.74 159% 192860 Mon Nov 14 14:06:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1502.cmap 696.27866 1366.61 3.72 11:30.22 198% 162648 Mon Nov 14 14:21:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1061.cmap 982.67760 2202.67 13.00 16:13.69 227% 168716 Mon Nov 14 14:36:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig294.cmap 976.12854 1853.32 15.11 16:07.42 193% 192704 Mon Nov 14 14:26:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig918.cmap 976.06037 1304.84 10.35 15:56.00 137% 205540 Mon Nov 14 14:26:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig584.cmap 1009.01029 1595.13 11.24 16:26.12 162% 177372 Mon Nov 14 14:27:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig685.cmap 878.89177 1180.68 10.56 14:31.64 136% 164968 Mon Nov 14 14:24:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig986.cmap 1038.32418 2154.90 14.71 16:57.23 213% 166456 Mon Nov 14 14:30:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig933.cmap 721.05963 1144.28 8.24 11:48.22 162% 173856 Mon Nov 14 14:02:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig88.cmap 708.51621 1398.37 8.56 11:36.65 201% 162884 Mon Nov 14 14:31:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig556.cmap 773.70547 1425.26 10.76 12:41.98 188% 184984 Mon Nov 14 14:23:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig344.cmap 1025.56275 1525.34 10.37 16:44.97 152% 191144 Mon Nov 14 14:27:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1054.cmap 1106.63721 2068.01 12.83 18:01.46 192% 199504 Mon Nov 14 14:28:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig527.cmap 924.22191 1359.81 12.83 15:15.73 149% 193688 Mon Nov 14 14:25:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig733.cmap 1097.59719 1654.44 14.39 18:02.94 154% 167116 Mon Nov 14 14:31:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig640.cmap 959.15095 1338.86 10.65 15:50.97 141% 161080 Mon Nov 14 14:35:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig664.cmap 678.84684 1122.41 8.74 11:01.48 171% 180152 Mon Nov 14 14:21:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig177.cmap 1152.48401 1902.29 13.92 18:42.13 170% 186096 Mon Nov 14 14:29:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig97.cmap 643.62431 1421.57 8.12 10:35.76 224% 169732 Mon Nov 14 14:20:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig427.cmap 816.13770 1436.97 10.59 13:11.60 182% 174520 Mon Nov 14 14:27:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1079.cmap 881.99552 1384.56 11.68 14:20.97 162% 154312 Mon Nov 14 14:24:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig610.cmap 945.46569 1498.28 13.35 15:33.84 161% 191292 Mon Nov 14 14:25:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig763.cmap 827.37911 1439.81 10.01 13:25.67 179% 157836 Mon Nov 14 14:27:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig576.cmap 934.19021 1631.94 13.04 15:11.79 180% 182036 Mon Nov 14 14:25:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1041.cmap 792.85490 1199.76 9.74 12:52.53 156% 159356 Mon Nov 14 14:23:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig341.cmap 728.70241 1393.64 10.65 11:40.82 200% 166252 Mon Nov 14 14:22:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1226.cmap 1097.24664 1694.43 14.54 17:50.57 159% 167928 Mon Nov 14 14:28:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig60.cmap 678.44004 2043.31 10.89 10:48.11 316% 246388 Mon Nov 14 14:21:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig364.cmap 948.68008 1878.71 13.51 15:23.52 204% 169940 Mon Nov 14 14:26:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig866.cmap 255.42529 1188.20 8.71 4:11.57 475% 170736 Mon Nov 14 14:14:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig901.cmap 186.70789 941.15 7.58 3:03.38 517% 160912 Mon Nov 14 14:13:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig897.cmap 366.06098 1085.33 9.71 6:01.26 303% 160740 Mon Nov 14 14:03:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1231.cmap 460.89494 1435.75 12.61 7:36.83 317% 180988 Mon Nov 14 14:04:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig476.cmap 630.11974 1896.61 17.20 10:24.35 306% 173396 Mon Nov 14 14:07:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig354.cmap 573.52172 1796.14 16.79 9:28.02 319% 182524 Mon Nov 14 14:06:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1346.cmap 415.77865 1149.16 10.31 6:50.63 282% 186868 Mon Nov 14 14:04:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig371.cmap 393.09411 1215.72 11.21 6:28.82 315% 185920 Mon Nov 14 14:03:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1588.cmap 424.71744 1212.81 10.32 7:02.44 289% 172660 Mon Nov 14 14:04:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1042.cmap 356.60440 1026.27 8.85 5:49.94 295% 160412 Mon Nov 14 14:03:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig350.cmap 496.37551 1624.59 13.51 8:09.06 334% 202320 Mon Nov 14 14:05:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig47.cmap 424.60306 1805.74 16.76 6:59.72 434% 225600 Mon Nov 14 14:04:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig966.cmap 551.36518 1673.41 14.26 9:08.47 307% 170624 Mon Nov 14 14:06:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig211.cmap 482.91627 1365.30 12.48 7:55.82 289% 180084 Mon Nov 14 14:05:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig455.cmap 519.39838 1550.17 13.96 8:35.45 303% 166592 Mon Nov 14 14:05:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1189.cmap 473.88838 1410.13 12.78 7:49.92 302% 161136 Mon Nov 14 14:05:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1155.cmap 513.89540 1327.22 7.04 5:26.10 409% 200836 Mon Nov 14 14:18:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1192.cmap 491.66879 1028.87 6.23 3:53.74 442% 172248 Mon Nov 14 14:18:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig956.cmap 948.08914 1964.40 16.68 9:49.91 335% 180296 Mon Nov 14 14:12:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig800.cmap 852.36187 1520.19 14.72 8:04.65 316% 187420 Mon Nov 14 14:11:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig358.cmap 752.41651 933.37 8.76 5:59.19 262% 166980 Mon Nov 14 14:09:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig775.cmap 1102.51023 1080.29 8.82 11:32.84 157% 181576 Mon Nov 14 14:28:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1519.cmap 905.52232 1507.20 13.41 8:10.17 310% 204588 Mon Nov 14 14:12:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig981.cmap 837.52607 1073.23 9.89 6:49.04 264% 159200 Mon Nov 14 14:11:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1538.cmap 822.54344 1065.12 9.60 6:34.75 272% 169056 Mon Nov 14 14:10:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig787.cmap 1338.58351 1591.16 13.03 14:39.77 182% 184468 Mon Nov 14 14:42:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1305.cmap 898.44190 1235.24 12.61 7:15.62 286% 170644 Mon Nov 14 14:12:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig764.cmap 833.68654 979.07 10.23 5:56.61 277% 152120 Mon Nov 14 14:11:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig526.cmap 855.82991 1129.02 9.60 6:11.49 306% 203024 Mon Nov 14 14:11:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig545.cmap 799.42539 1392.28 9.83 5:05.06 459% 191296 Mon Nov 14 14:23:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig463.cmap 984.11037 1512.42 13.80 8:07.63 312% 179984 Mon Nov 14 14:13:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig984.cmap 719.24039 1235.03 10.08 3:23.68 611% 159360 Mon Nov 14 14:22:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1401.cmap 971.02388 1248.38 11.30 7:28.91 280% 171060 Mon Nov 14 14:13:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig767.cmap 1277.35277 1502.01 5.11 12:11.26 206% 162804 Mon Nov 14 14:31:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig53.cmap 977.50168 1397.51 11.17 7:01.28 334% 240004 Mon Nov 14 14:13:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig803.cmap 1179.37637 1244.93 9.15 10:14.65 204% 168004 Mon Nov 14 14:10:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig710.cmap 1336.26501 1872.24 5.63 12:46.33 245% 162892 Mon Nov 14 14:32:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1236.cmap 1096.00754 1578.38 14.67 8:41.75 305% 183596 Mon Nov 14 14:15:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig570.cmap 1463.08219 1306.99 12.01 14:25.92 152% 166488 Mon Nov 14 14:15:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig479.cmap 1453.11962 1598.24 13.74 14:15.59 188% 199264 Mon Nov 14 14:15:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig312.cmap 1232.26282 1517.94 6.09 10:06.47 251% 169488 Mon Nov 14 14:30:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig962.cmap 1054.98403 1170.17 11.61 7:06.00 277% 195292 Mon Nov 14 14:14:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig908.cmap 1353.98223 1925.84 14.36 12:02.96 268% 161384 Mon Nov 14 14:32:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1259.cmap 1383.58221 1500.78 15.53 12:14.34 206% 208776 Mon Nov 14 14:33:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig569.cmap 1291.40852 1038.67 9.25 10:39.11 163% 158108 Mon Nov 14 14:41:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig851.cmap 1404.00411 1085.38 9.54 12:32.16 145% 160508 Mon Nov 14 14:43:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig270.cmap 1517.83927 1953.65 16.18 14:27.04 227% 168160 Mon Nov 14 14:45:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1180.cmap 1312.23846 1398.37 14.00 10:58.36 214% 181160 Mon Nov 14 14:32:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig422.cmap 1312.21303 1555.07 5.41 10:51.27 239% 172612 Mon Nov 14 14:32:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig558.cmap 1386.84512 1477.96 4.72 12:02.39 205% 173520 Mon Nov 14 14:33:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1125.cmap 1414.78246 1911.00 13.98 12:16.36 261% 169652 Mon Nov 14 14:37:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig774.cmap 1226.46736 763.08 9.99 9:05.58 141% 180144 Mon Nov 14 14:30:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig199.cmap 1295.87138 1638.64 13.72 10:16.83 267% 164012 Mon Nov 14 14:31:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig999.cmap 1323.05644 1089.78 10.65 10:34.08 173% 150516 Mon Nov 14 14:35:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig734.cmap 1261.06194 963.45 4.05 9:28.98 170% 157944 Mon Nov 14 14:31:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig293.cmap 1476.39590 1829.64 6.55 13:09.56 232% 198852 Mon Nov 14 14:35:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig729.cmap 1451.38449 1189.14 11.20 12:43.15 157% 157076 Mon Nov 14 14:34:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1051.cmap 1476.66547 1492.91 13.78 13:06.93 191% 170620 Mon Nov 14 14:44:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig555.cmap 1249.39840 1064.67 12.85 9:08.96 196% 176328 Mon Nov 14 14:31:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1243.cmap 1416.41470 1460.17 5.88 11:58.49 204% 208696 Mon Nov 14 14:34:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig299.cmap 1467.23160 1310.46 13.18 12:48.39 172% 164260 Mon Nov 14 14:15:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig650.cmap 1069.79456 933.56 7.09 6:12.17 252% 149168 Mon Nov 14 14:28:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig776.cmap 1441.39279 1397.42 12.01 12:21.33 190% 179376 Mon Nov 14 14:44:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig879.cmap 1368.62437 1248.81 12.01 11:06.21 189% 192896 Mon Nov 14 14:33:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig593.cmap 1303.31858 1074.01 10.72 9:50.30 183% 160692 Mon Nov 14 14:35:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig143.cmap 1427.89930 1617.87 6.37 11:59.86 225% 195504 Mon Nov 14 14:34:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig808.cmap 1098.45190 902.50 3.88 6:32.54 230% 161628 Mon Nov 14 14:29:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig242.cmap 1472.77650 1634.85 15.03 12:46.78 215% 178460 Mon Nov 14 14:16:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig900.cmap 1285.95383 1236.05 6.22 9:42.97 213% 205400 Mon Nov 14 14:32:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig300.cmap 1380.03468 1363.19 5.51 11:20.69 201% 165044 Mon Nov 14 14:34:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig315.cmap 1386.57023 1647.66 7.75 11:29.29 240% 185748 Mon Nov 14 14:34:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1007.cmap 1169.81830 941.05 5.23 7:53.43 199% 158696 Mon Nov 14 14:30:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1034.cmap 1375.20683 1346.45 6.36 11:20.20 198% 165928 Mon Nov 14 14:34:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig847.cmap 1208.47620 1017.76 4.82 8:34.29 198% 160164 Mon Nov 14 14:31:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1110.cmap 1311.20580 1019.84 5.02 10:16.23 166% 169888 Mon Nov 14 14:32:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig594.cmap 1167.98617 1133.18 6.01 7:53.78 240% 172676 Mon Nov 14 14:30:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig748.cmap 1310.97640 1382.62 5.97 10:16.75 225% 174044 Mon Nov 14 14:32:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1434.cmap 1332.82247 1165.80 5.70 10:37.40 183% 167220 Mon Nov 14 14:33:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig708.cmap 1259.25036 1307.73 7.25 9:24.01 233% 160660 Mon Nov 14 14:32:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig930.cmap 1344.00239 1135.34 6.35 10:50.09 175% 191472 Mon Nov 14 14:33:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig666.cmap 1345.64876 1325.76 6.90 10:50.38 204% 197496 Mon Nov 14 14:33:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig950.cmap 1385.33765 1317.48 7.52 11:30.80 191% 164796 Mon Nov 14 14:34:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig789.cmap 1302.89742 1362.34 7.38 10:07.02 225% 157292 Mon Nov 14 14:32:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig451.cmap 1240.33747 1204.32 5.45 9:04.29 222% 161044 Mon Nov 14 14:31:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig144.cmap 1372.94809 1181.91 6.14 11:18.33 175% 193936 Mon Nov 14 14:34:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig320.cmap 1222.78815 910.81 4.55 8:46.93 173% 154148 Mon Nov 14 14:31:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig78.cmap 1194.71627 1577.28 5.45 8:19.23 317% 247588 Mon Nov 14 14:31:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig722.cmap 1375.74662 1409.89 7.10 11:19.94 208% 166412 Mon Nov 14 14:34:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1188.cmap 1351.31848 1265.30 5.50 10:57.28 193% 158664 Mon Nov 14 14:33:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1260.cmap 1197.21263 865.31 4.43 8:21.14 173% 145668 Mon Nov 14 14:31:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1509.cmap 1388.80819 1414.66 6.40 11:32.88 205% 159108 Mon Nov 14 14:34:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig48.cmap 1061.95947 1384.46 5.37 6:06.77 378% 202256 Mon Nov 14 14:28:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig105.cmap 1167.05496 886.93 4.38 7:52.48 188% 170072 Mon Nov 14 14:30:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1774.cmap 1288.56809 990.04 3.62 9:53.94 167% 209292 Mon Nov 14 14:32:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1780.cmap 1237.51045 812.88 3.27 9:01.35 150% 249508 Mon Nov 14 14:31:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1783.cmap 1251.61090 1056.88 2.91 9:15.00 190% 219252 Mon Nov 14 14:32:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig869.cmap 1064.66899 690.49 2.63 6:01.07 191% 272776 Mon Nov 14 14:28:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1785.cmap 1055.85757 1104.60 9.33 5:53.38 315% 208552 Mon Nov 14 14:15:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1311.cmap 1265.18136 684.95 8.16 9:13.63 125% 217484 Mon Nov 14 14:32:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig871.cmap 1070.30672 655.69 2.61 5:57.94 183% 159996 Mon Nov 14 14:29:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1795.cmap 1401.46014 686.04 7.19 11:25.64 101% 224660 Mon Nov 14 14:15:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1314.cmap 1219.61501 579.94 8.97 8:18.43 118% 167064 Mon Nov 14 14:31:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1798.cmap 1227.45332 517.18 7.65 8:20.61 104% 156540 Mon Nov 14 14:31:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1512.cmap 1423.71941 846.50 8.84 11:33.08 123% 218184 Mon Nov 14 14:44:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1808.cmap 1313.80226 261.98 5.29 9:46.07 45% 158548 Mon Nov 14 14:13:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig820.cmap 1313.77649 880.14 9.32 9:43.00 152% 209844 Mon Nov 14 14:36:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1254.cmap 1239.37431 520.66 6.79 8:28.06 103% 162140 Mon Nov 14 14:35:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1819.cmap 1185.19663 260.19 5.81 7:32.22 58% 157976 Mon Nov 14 14:30:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1059.cmap 1204.10691 516.32 8.33 7:49.00 111% 188600 Mon Nov 14 14:31:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1816.cmap 1279.79106 649.23 8.96 9:00.62 121% 218224 Mon Nov 14 14:32:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1821.cmap 1285.82264 604.83 8.83 9:01.94 113% 156860 Mon Nov 14 14:32:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig778.cmap 1187.61378 500.75 7.12 7:23.42 114% 184984 Mon Nov 14 14:30:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1325.cmap 1133.03758 661.54 2.42 6:25.29 172% 220756 Mon Nov 14 14:30:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1517.cmap 795.14632 461.00 7.17 0:46.70 1002% 170484 Mon Nov 14 14:24:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1205.cmap 1351.88454 1126.15 12.79 9:59.47 189% 160064 Mon Nov 14 14:33:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1458.cmap 1419.97509 782.20 8.75 11:02.96 119% 152960 Mon Nov 14 14:44:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig283.cmap 1382.58927 1280.88 14.11 10:14.69 210% 169508 Mon Nov 14 14:34:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1332.cmap 1266.51114 763.99 9.27 8:16.52 155% 249048 Mon Nov 14 14:32:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1010.cmap 1365.67668 1190.82 12.92 9:58.40 201% 158608 Mon Nov 14 14:37:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig780.cmap 1527.21110 1583.81 17.42 12:43.81 209% 182576 Mon Nov 14 14:36:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1563.cmap 1441.28654 810.65 9.03 11:17.59 120% 183992 Mon Nov 14 14:35:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1524.cmap 1318.52478 1157.51 9.86 9:11.04 211% 192028 Mon Nov 14 14:33:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1356.cmap 1372.86013 1304.38 13.13 10:02.00 218% 251672 Mon Nov 14 14:37:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig239.cmap 1283.22186 753.78 9.52 8:31.58 149% 183424 Mon Nov 14 14:32:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1726.cmap 995.46759 601.96 5.24 3:42.16 273% 174876 Mon Nov 14 14:14:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1527.cmap 1332.59910 792.68 9.50 9:16.36 144% 157064 Mon Nov 14 14:36:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1337.cmap 1418.44304 1380.90 15.61 10:41.59 217% 283440 Mon Nov 14 14:34:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1616.cmap 1198.07914 667.46 2.55 7:01.68 158% 159156 Mon Nov 14 14:31:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1013.cmap 1045.43766 670.65 6.82 4:21.96 258% 165732 Mon Nov 14 14:15:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1728.cmap 1314.63203 977.54 8.16 8:49.64 186% 255316 Mon Nov 14 14:33:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig782.cmap 1354.45726 954.01 10.49 9:29.25 169% 225224 Mon Nov 14 14:33:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1566.cmap 1327.15579 736.98 10.20 9:00.28 138% 156280 Mon Nov 14 14:33:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1729.cmap 1029.06501 597.36 6.55 4:02.98 248% 158676 Mon Nov 14 14:15:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1531.cmap 1192.01267 620.38 2.57 6:44.25 154% 155372 Mon Nov 14 14:31:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig485.cmap 1446.38565 1049.93 9.80 10:52.78 162% 161264 Mon Nov 14 14:15:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1730.cmap 1473.22493 1068.40 11.24 11:13.96 160% 210680 Mon Nov 14 14:16:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1731.cmap 1400.13800 605.91 7.76 10:01.97 101% 164888 Mon Nov 14 14:15:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1156.cmap 1284.82555 1075.68 6.72 8:10.18 220% 168584 Mon Nov 14 14:32:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1263.cmap 1328.72612 1015.96 9.17 8:46.53 194% 208296 Mon Nov 14 14:36:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig286.cmap 1389.65585 656.21 8.02 9:49.20 112% 173000 Mon Nov 14 14:34:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig243.cmap 1355.72726 1046.07 10.43 9:14.14 190% 219300 Mon Nov 14 14:33:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1540.cmap 1088.51967 763.80 9.01 4:47.25 269% 168576 Mon Nov 14 14:16:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1412.cmap 1131.88312 942.12 9.80 5:28.43 289% 184320 Mon Nov 14 14:16:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig919.cmap 1328.58511 1401.11 7.52 8:43.21 269% 217504 Mon Nov 14 14:33:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1570.cmap 1310.11841 1177.77 6.40 8:24.77 234% 161156 Mon Nov 14 14:33:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1571.cmap 1217.89041 645.13 5.10 6:51.55 157% 186732 Mon Nov 14 14:31:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1265.cmap 1215.35491 762.20 4.65 6:51.15 186% 210104 Mon Nov 14 14:31:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1541.cmap 1258.71262 862.62 5.09 7:32.07 191% 160168 Mon Nov 14 14:32:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1114.cmap 1225.62440 742.99 5.04 7:00.79 177% 187704 Mon Nov 14 14:31:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig245.cmap 1215.16854 729.40 5.08 6:49.50 179% 186200 Mon Nov 14 14:31:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1469.cmap 1306.08478 1083.03 6.41 8:20.31 217% 184316 Mon Nov 14 14:32:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1352.cmap 1254.02090 867.06 4.70 7:29.29 194% 215064 Mon Nov 14 14:32:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1682.cmap 1204.90678 821.94 5.00 6:40.26 206% 156848 Mon Nov 14 14:31:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1545.cmap 1191.26472 681.29 4.50 6:24.74 178% 156996 Mon Nov 14 14:31:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig512.cmap 1346.25350 1444.67 8.22 9:00.61 268% 224356 Mon Nov 14 14:33:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1683.cmap 1267.31382 943.30 6.08 7:41.93 205% 200092 Mon Nov 14 14:32:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1354.cmap 1364.44783 1162.26 4.25 9:19.33 208% 169340 Mon Nov 14 14:33:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1417.cmap 1296.06916 910.21 5.00 8:04.64 188% 219024 Mon Nov 14 14:32:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1574.cmap 1230.11432 741.65 4.46 6:57.26 178% 214468 Mon Nov 14 14:31:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1549.cmap 1292.04223 985.32 5.92 8:00.05 206% 168152 Mon Nov 14 14:32:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1551.cmap 1279.89685 990.88 4.91 7:46.53 213% 212460 Mon Nov 14 14:32:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig557.cmap 1227.56348 642.94 4.73 6:55.25 155% 181248 Mon Nov 14 14:31:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig513.cmap 1317.12857 1111.24 6.09 8:25.18 221% 192880 Mon Nov 14 14:33:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1218.cmap 1309.40348 1033.84 5.69 8:17.45 208% 227044 Mon Nov 14 14:33:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1553.cmap 1251.17080 845.62 5.88 7:17.33 194% 155768 Mon Nov 14 14:32:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1576.cmap 1275.48500 931.93 5.56 7:44.28 201% 154900 Mon Nov 14 14:32:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig249.cmap 1281.69820 960.06 5.99 7:50.87 205% 185060 Mon Nov 14 14:32:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig668.cmap 1271.10815 924.47 5.81 7:39.59 202% 168124 Mon Nov 14 14:32:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1556.cmap 1257.87211 887.88 5.21 7:26.43 200% 167600 Mon Nov 14 14:32:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1577.cmap 1257.71915 1015.93 5.73 7:26.89 228% 248208 Mon Nov 14 14:32:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1741.cmap 1262.16399 843.37 4.59 7:30.17 188% 217984 Mon Nov 14 14:32:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig498.cmap 1363.79623 1177.92 5.06 9:06.53 216% 221564 Mon Nov 14 14:33:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1557.cmap 1423.44788 1289.72 13.45 9:53.78 219% 213988 Mon Nov 14 14:34:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig386.cmap 1460.65932 1373.15 12.62 10:26.26 221% 220072 Mon Nov 14 14:35:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig671.cmap 1384.66367 1193.31 14.16 9:13.83 218% 215888 Mon Nov 14 14:34:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig836.cmap 1471.81096 1004.28 11.16 10:29.44 161% 159192 Mon Nov 14 14:16:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1221.cmap 1497.75088 1365.74 3.85 10:54.69 209% 211400 Mon Nov 14 14:36:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1744.cmap 1198.53059 1157.52 12.24 5:52.03 332% 225812 Mon Nov 14 14:18:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig252.cmap 1502.01524 1531.87 14.65 10:55.09 236% 250140 Mon Nov 14 14:45:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1745.cmap 1377.55486 1448.73 13.49 8:43.39 279% 249784 Mon Nov 14 14:37:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1581.cmap 1165.90312 889.81 9.79 5:11.15 289% 170884 Mon Nov 14 14:17:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1746.cmap 1419.88259 979.47 12.74 9:17.33 178% 185512 Mon Nov 14 14:34:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig337.cmap 1373.63117 906.41 9.63 8:27.30 180% 184328 Mon Nov 14 14:34:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1691.cmap 1414.22633 1159.56 13.32 9:02.37 216% 166940 Mon Nov 14 14:34:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig976.cmap 1474.43221 1044.85 11.66 9:59.36 176% 170684 Mon Nov 14 14:16:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1026.cmap 1521.39875 1614.53 14.45 10:33.51 257% 252128 Mon Nov 14 14:36:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig505.cmap 1390.50399 1293.77 12.73 8:21.06 260% 159592 Mon Nov 14 14:37:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1693.cmap 1347.49366 665.38 9.80 7:35.78 148% 154036 Mon Nov 14 14:33:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1425.cmap 1429.05031 1403.94 13.71 8:53.75 265% 201056 Mon Nov 14 14:35:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig839.cmap 1100.51968 604.50 6.12 3:26.32 295% 249572 Mon Nov 14 14:16:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig743.cmap 1430.00895 1277.66 13.68 8:48.53 244% 163604 Mon Nov 14 14:35:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig339.cmap 1368.89280 1058.79 11.57 7:41.34 232% 267108 Mon Nov 14 14:34:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1227.cmap 1442.51770 816.43 9.69 8:56.56 153% 167224 Mon Nov 14 14:44:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig436.cmap 1407.98632 1169.45 10.62 8:03.12 244% 215700 Mon Nov 14 14:34:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1752.cmap 1535.70564 1461.73 4.03 10:23.52 235% 214584 Mon Nov 14 14:36:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1482.cmap 1506.81672 1185.78 12.58 9:52.16 202% 215736 Mon Nov 14 14:16:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig745.cmap 1173.33742 720.80 8.28 4:13.40 287% 164896 Mon Nov 14 14:17:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1636.cmap 1423.59180 889.08 10.05 8:14.93 181% 160396 Mon Nov 14 14:34:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1430.cmap 1334.32865 546.50 8.38 6:47.76 136% 151592 Mon Nov 14 14:33:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1379.cmap 1311.97962 1389.74 16.44 6:28.34 362% 223888 Mon Nov 14 14:20:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1280.cmap 1482.37501 927.93 10.65 9:17.63 168% 167920 Mon Nov 14 14:35:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1590.cmap 1467.13481 818.02 9.32 8:56.87 154% 201832 Mon Nov 14 14:45:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1757.cmap 1353.38000 793.65 9.67 7:02.74 190% 170128 Mon Nov 14 14:33:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1756.cmap 1379.48893 733.70 10.28 7:28.08 166% 251472 Mon Nov 14 14:34:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1485.cmap 1362.58453 865.59 9.49 7:11.71 202% 155204 Mon Nov 14 14:33:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1640.cmap 1235.33688 969.67 12.80 5:03.06 324% 286908 Mon Nov 14 14:18:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1130.cmap 1443.94352 626.62 8.55 8:27.16 125% 155808 Mon Nov 14 14:44:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1382.cmap 1490.11314 1037.42 12.55 9:13.83 189% 184228 Mon Nov 14 14:45:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1282.cmap 1506.97485 1536.38 12.66 9:22.88 275% 247952 Mon Nov 14 14:36:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1433.cmap 1491.92514 1159.35 15.74 9:10.57 213% 267464 Mon Nov 14 14:45:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1384.cmap 1461.14703 1156.38 10.38 8:30.67 228% 257888 Mon Nov 14 14:35:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1233.cmap 1454.30738 803.60 8.12 8:20.46 162% 258224 Mon Nov 14 14:35:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig845.cmap 1530.09485 1283.82 4.39 9:24.47 228% 201036 Mon Nov 14 14:36:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig441.cmap 1487.28439 992.68 10.60 8:37.56 193% 157880 Mon Nov 14 14:36:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig395.cmap 1410.84898 1548.17 14.66 7:18.04 356% 212416 Mon Nov 14 14:34:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1763.cmap 1393.44649 1063.40 12.47 6:46.44 264% 191140 Mon Nov 14 14:37:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1285.cmap 1262.60802 813.23 10.20 4:28.37 306% 169580 Mon Nov 14 14:19:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1705.cmap 1212.31857 620.72 7.67 3:28.54 301% 166708 Mon Nov 14 14:18:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig618.cmap 1405.95400 1189.79 13.29 6:40.16 300% 210648 Mon Nov 14 14:38:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1707.cmap 1262.48977 752.20 8.06 3:53.93 324% 211436 Mon Nov 14 14:19:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig298.cmap 1467.29827 655.34 8.78 7:07.15 155% 164984 Mon Nov 14 14:45:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1038.cmap 1422.80109 1400.43 16.06 6:14.62 378% 184944 Mon Nov 14 14:38:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig273.cmap 1408.21600 787.66 4.41 6:06.43 216% 190152 Mon Nov 14 14:34:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1648.cmap 1458.19925 1274.60 12.58 6:50.02 313% 206416 Mon Nov 14 14:35:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1493.cmap 1303.19356 874.28 10.56 4:19.60 340% 169644 Mon Nov 14 14:19:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1649.cmap 1270.95107 745.38 9.66 3:44.85 335% 213508 Mon Nov 14 14:19:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1182.cmap 1377.27607 970.52 9.26 5:26.48 300% 271636 Mon Nov 14 14:34:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig850.cmap 1497.90656 781.86 10.53 7:26.62 177% 160192 Mon Nov 14 14:36:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1769.cmap 1478.08541 653.06 9.13 7:05.22 155% 164004 Mon Nov 14 14:35:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1710.cmap 1532.86751 1277.75 16.25 8:00.10 269% 223388 Mon Nov 14 14:36:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig195.cmap 1516.63651 1080.93 13.23 7:44.33 235% 197216 Mon Nov 14 14:36:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1771.cmap 1494.24385 948.91 8.72 7:19.84 217% 213424 Mon Nov 14 14:16:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig621.cmap 1312.56410 1048.68 11.42 4:17.69 411% 217716 Mon Nov 14 14:20:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1712.cmap 1402.90860 1124.61 14.05 5:41.99 332% 164904 Mon Nov 14 14:34:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1713.cmap 1561.59130 1079.96 4.45 8:21.94 216% 159140 Mon Nov 14 14:37:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1141.cmap 1510.37913 916.62 3.22 7:30.08 204% 166508 Mon Nov 14 14:36:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1604.cmap 1455.16679 946.25 5.91 6:35.67 240% 161024 Mon Nov 14 14:35:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1499.cmap 1497.01866 876.11 3.24 7:14.56 202% 216268 Mon Nov 14 14:36:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig448.cmap 1502.65496 933.25 11.40 7:16.01 216% 217712 Mon Nov 14 14:36:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1606.cmap 1490.29043 890.08 9.63 7:03.72 212% 214740 Mon Nov 14 14:36:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1608.cmap 1571.32785 1340.46 5.11 8:23.27 267% 222128 Mon Nov 14 14:37:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1046.cmap 1496.87448 837.86 2.60 6:56.07 202% 168032 Mon Nov 14 14:36:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1398.cmap 1328.27388 948.20 12.05 4:00.46 399% 205792 Mon Nov 14 14:20:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig449.cmap 1384.50864 753.50 9.57 4:46.74 266% 169072 Mon Nov 14 14:34:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig760.cmap 1302.41994 666.50 9.17 3:20.42 337% 189056 Mon Nov 14 14:19:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1609.cmap 1531.60328 1191.90 11.88 7:03.16 284% 214404 Mon Nov 14 14:36:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig856.cmap 1406.16285 984.52 13.13 4:53.88 339% 154112 Mon Nov 14 14:38:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1449.cmap 1569.25526 2328.25 18.05 7:30.75 520% 217772 Mon Nov 14 14:37:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig998.cmap 1497.23270 903.39 9.20 6:19.01 240% 211068 Mon Nov 14 14:36:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig404.cmap 1506.57070 811.76 10.49 6:26.98 212% 166112 Mon Nov 14 14:36:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1402.cmap 1520.62884 1073.38 11.72 6:40.41 270% 213116 Mon Nov 14 14:36:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1662.cmap 1526.83890 702.02 3.04 6:48.32 172% 162544 Mon Nov 14 14:36:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1452.cmap 1551.02936 1031.82 3.57 7:12.68 239% 202660 Mon Nov 14 14:37:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1404.cmap 1570.03831 1102.08 4.36 7:32.71 244% 217304 Mon Nov 14 14:37:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1302.cmap 1553.95009 954.62 4.47 7:16.34 219% 181092 Mon Nov 14 14:37:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1251.cmap 1517.82527 738.69 2.64 6:39.65 185% 171848 Mon Nov 14 14:36:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1456.cmap 1532.33137 1105.51 13.83 6:29.63 287% 166264 Mon Nov 14 14:17:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1003.cmap 1610.23791 1336.05 4.58 7:59.36 279% 224096 Mon Nov 14 14:38:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig632.cmap 1349.78739 1191.63 20.14 3:40.53 549% 169744 Mon Nov 14 14:20:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig587.cmap 1498.47931 1520.86 7.87 5:34.07 457% 251720 Mon Nov 14 14:36:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig635.cmap 1458.58932 746.02 5.71 4:53.54 256% 158100 Mon Nov 14 14:35:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1202.cmap 1478.36891 924.29 7.59 5:13.53 297% 161992 Mon Nov 14 14:35:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig151.cmap 1348.06864 794.33 10.39 3:03.08 439% 222228 Mon Nov 14 14:20:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig203.cmap 1542.46856 1217.75 16.49 6:12.44 331% 211316 Mon Nov 14 14:17:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig207.cmap 1526.47015 983.18 11.92 5:52.38 282% 207744 Mon Nov 14 14:36:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig208.cmap 1347.97697 803.11 13.39 2:55.32 465% 212060 Mon Nov 14 14:20:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig162.cmap 1627.88517 1230.20 7.07 7:32.41 273% 212048 Mon Nov 14 14:38:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig113.cmap 1550.60479 1241.00 15.85 6:04.97 344% 211736 Mon Nov 14 14:37:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig169.cmap 1528.98791 1969.17 32.31 5:44.05 581% 268504 Mon Nov 14 14:36:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig219.cmap 1435.27147 969.17 8.60 4:06.33 396% 256024 Mon Nov 14 14:35:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig171.cmap 1637.06289 1239.10 5.52 7:27.35 278% 260264 Mon Nov 14 14:38:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig173.cmap 1502.12893 1360.24 11.26 5:11.83 439% 199784 Mon Nov 14 14:36:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig233.cmap 1492.32414 1198.25 8.52 4:58.17 404% 192780 Mon Nov 14 14:36:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig182.cmap 1665.11677 1402.00 8.75 7:48.14 301% 219836 Mon Nov 14 14:39:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig600.cmap 1361.58099 1099.14 13.20 2:45.13 673% 154828 Mon Nov 14 14:20:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1138.cmap 1470.00252 1396.19 12.65 4:27.86 525% 175976 Mon Nov 14 14:35:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig824.cmap 1426.07018 1062.84 8.16 3:43.71 478% 157724 Mon Nov 14 14:35:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig343.cmap 1458.00627 1060.34 6.68 4:13.13 421% 161168 Mon Nov 14 14:35:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1060.cmap 1648.88247 1410.81 6.28 7:22.00 320% 184688 Mon Nov 14 14:38:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1383.cmap 1380.87527 1144.86 18.59 2:49.67 685% 166692 Mon Nov 14 14:21:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1022.cmap 1419.65431 1149.13 6.42 3:27.43 557% 163584 Mon Nov 14 14:34:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1225.cmap 1435.75554 1207.98 8.72 3:40.85 550% 153240 Mon Nov 14 14:35:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1212.cmap 1507.61901 1484.25 17.63 4:50.42 517% 187420 Mon Nov 14 14:36:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig911.cmap 1477.52936 1090.03 12.63 4:20.52 423% 162732 Mon Nov 14 14:35:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig450.cmap 1439.32198 1149.21 9.70 3:44.13 517% 164076 Mon Nov 14 14:35:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig92.cmap 1497.54481 1462.35 9.83 4:39.64 526% 188688 Mon Nov 14 14:36:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig828.cmap 1651.60137 1383.05 7.13 7:10.41 322% 181720 Mon Nov 14 14:38:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig496.cmap 1525.63671 896.76 10.60 4:45.35 317% 147532 Mon Nov 14 14:36:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig321.cmap 1409.29851 917.51 5.66 3:04.71 499% 145188 Mon Nov 14 14:34:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1387.cmap 1430.49602 1088.62 7.59 3:25.59 533% 155372 Mon Nov 14 14:35:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig466.cmap 1434.43831 1206.02 9.14 3:26.01 589% 161540 Mon Nov 14 14:35:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig378.cmap 1504.72432 1455.04 10.33 4:31.91 538% 166796 Mon Nov 14 14:36:21 CST 2022 2022-11-14 20:26:32,303:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 20:26:32,309:INFO:Loaded 11845 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 20:26:32,339:INFO:Found 1885 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 20:26:32,339:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 20:26:32,340:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 20:26:32,341:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_refineB1 2022-11-14 20:26:32,341:INFO:conda_env=None,conda_source=None 2022-11-14 20:26:32,342:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 20:26:32,435:INFO: START 1: mrg_exp_refineB, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:26:41,139:INFO: STOP 1: mrg_exp_refineB, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.15m RunTime= 0h 0.09m CPUload=216% bionano2c 2022-11-14 20:26:41,140:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_refineB1 2022-11-14 20:26:41,140:INFO: mrg_exp_refineB1_0 completed in: 8.7s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.15m CPU time : 0h 0.15m Begin machine parsable segment for: Cmap_Merge_exp_refineB1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_refineB1_0 8.70248 8.81 3.35 0:05.62 216% 542216 Mon Nov 14 14:39:42 CST 2022 2022-11-14 20:26:42,799:INFO:Generating jobs for CharacterizeD_refineB1 2022-11-14 20:26:42,799:INFO:CharacterizeD_refineB1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/EXP_REFINEB1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/alignref/EXP_REFINEB1 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 20:26:42,801:INFO:Running jobs for CharacterizeD_refineB1 2022-11-14 20:26:42,801:INFO:************************* Executing stage 7: Merge0 ************************* 2022-11-14 20:26:42,802:INFO:Generating jobs for Merge0 2022-11-14 20:26:42,802:INFO:extensionCount= 0 : Adding roughMerge args 2022-11-14 20:26:42,802:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 20:26:42,803:INFO: Starting Multi-Threaded Process: CharacterizeD_refineB1 2022-11-14 20:26:42,803:INFO:conda_env=None,conda_source=None 2022-11-14 20:26:42,803:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:26:42,808:INFO:Loaded 11849 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 20:26:42,830:INFO:Found 1885 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 20:26:42,830:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/mergeContigs.txt 2022-11-14 20:26:42,831:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/mergeContigs.txt 2022-11-14 20:26:42,831:INFO:Merge0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/exp_mrg0 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -ScaleDelta 0.025 20 -hashScaleDelta 2 -sr 0.02 -pairmerge 60 0.0 100.0 100.0 100.0 10 -BreakEndOutlier 60 10 100 10 -BreakOutlier 60 10 100 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/mergeContigs.txt 2022-11-14 20:26:42,831:INFO:Running jobs for Merge0 2022-11-14 20:26:42,832:INFO: Starting Multi-Threaded Process: Merge0 2022-11-14 20:26:42,832:INFO:conda_env=None,conda_source=None 2022-11-14 20:26:42,832:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:26:42,868:INFO: START 1: CharD_refineB1, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:26:42,869:INFO: START 1: Merge0, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:30:01,525:INFO: STOP 1: Merge0, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 3.31m RunTime= 0h 3.30m CPUload=3443% saphyr1a 2022-11-14 20:30:01,526:INFO: Finished Multi-Threaded Process: Merge0 2022-11-14 20:30:01,541:INFO: Merge0 completed in: 198.7s Result Found Completed 1 jobs on 56 threads Clock time: 0h 3.31m CPU time : 0h 3.31m Begin machine parsable segment for: Merge0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge0 198.65515 6062.92 752.30 3:17.91 3443% 28617588 Mon Nov 14 14:30:01 CST 2022 2022-11-14 20:30:01,541:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 20:30:01,542:INFO:Loaded 801 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 20:30:01,553:INFO:Found 799 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 20:30:01,554:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 20:30:01,554:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 20:30:01,556:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg0 2022-11-14 20:30:01,556:INFO:conda_env=None,conda_source=None 2022-11-14 20:30:01,556:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 20:30:01,597:INFO: START 1: mrg_exp_mrg0_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:30:06,128:INFO: STOP 1: mrg_exp_mrg0_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.08m RunTime= 0h 0.04m CPUload=128% bionano2c 2022-11-14 20:30:06,128:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg0 2022-11-14 20:30:06,129:INFO: mrg_exp_mrg0_0 completed in: 4.5s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.08m CPU time : 0h 0.08m Begin machine parsable segment for: Cmap_Merge_exp_mrg0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg0_0 4.53007 1.54 1.67 0:02.49 128% 144556 Mon Nov 14 14:43:08 CST 2022 2022-11-14 20:30:07,147:INFO:Generating jobs for CharacterizeD_Merge0 2022-11-14 20:30:07,148:INFO:CharacterizeD_Merge0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/EXP_MRG0.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/alignref/EXP_MRG0 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 20:30:07,148:INFO:Running jobs for CharacterizeD_Merge0 2022-11-14 20:30:07,148:INFO:Rough assembly: waiting for merge0 characterize 2022-11-14 20:30:07,148:INFO:Waiting for all threads to complete 2022-11-14 20:30:07,149:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge0 2022-11-14 20:30:07,149:INFO:conda_env=None,conda_source=None 2022-11-14 20:30:07,149:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:30:07,154:INFO: START 1: CharD_Merge0, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:30:10,043:INFO: STOP 1: CharD_refineB1, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 3.45m RunTime= 0h 0.13m CPUload=1413% saphyr1a 2022-11-14 20:30:10,044:INFO: Finished Multi-Threaded Process: CharacterizeD_refineB1 2022-11-14 20:30:10,045:INFO:Characterize refineB1 completed : will check Results 2022-11-14 20:30:10,046:INFO: CharD_refineB1 completed in: 207.2s Result Found Completed 1 jobs on 56 threads Clock time: 0h 3.45m CPU time : 0h 3.45m Begin machine parsable segment for: CharacterizeD_refineB1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_refineB1 207.17515 99.52 11.10 0:07.82 1413% 1268124 Mon Nov 14 14:30:09 CST 2022 2022-11-14 20:30:12,189:INFO:Stage Summary: CharacterizeD_refineB1 Number Genome Maps: 1877 Total Genome Map Length (Mbp): 1997.249 Mean Genome Map Length (Mbp): 1.064 Median Genome Map Length (Mbp): 0.362 Genome Map N50 (Mbp): 18.295 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 2.955 Total number of aligned Genome Maps : 3 (0.00) Total Aligned Length (Mbp) : 0.377 Total Aligned Length / Reference Length: 0.001 Total Unique Aligned Length (Mbp) : 0.227 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 20:30:12,189:INFO:Characterize refineB1 results check completed 2022-11-14 20:30:18,031:INFO: STOP 1: CharD_Merge0, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.18m RunTime= 0h 0.11m CPUload=1395% saphyr1a 2022-11-14 20:30:18,031:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge0 2022-11-14 20:30:18,031:INFO:Characterize Merge0 completed : will check Results 2022-11-14 20:30:18,032:INFO: CharD_Merge0 completed in: 10.9s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.18m CPU time : 0h 0.18m Begin machine parsable segment for: CharacterizeD_Merge0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge0 10.87613 85.29 9.41 0:06.78 1395% 1191616 Mon Nov 14 14:30:17 CST 2022 2022-11-14 20:30:19,277:INFO:Stage Summary: CharacterizeD_Merge0 Number Genome Maps: 799 Total Genome Map Length (Mbp): 1167.809 Mean Genome Map Length (Mbp): 1.462 Median Genome Map Length (Mbp): 0.256 Genome Map N50 (Mbp): 13.188 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.728 Total number of aligned Genome Maps : 1 (0.00) Total Aligned Length (Mbp) : 0.151 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.151 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 20:30:19,277:INFO:Characterize Merge0 results check completed 2022-11-14 20:30:19,278:INFO:Configuring the rough assembly 2022-11-14 20:30:19,939:INFO:Rough assembly: reference alignment length ratio 0.01; using reference : /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/EXP_MRG0.cmap 2022-11-14 20:30:19,951:INFO:Rough assembly: using reference: /home/bionano/access/local/jobs/10230251/output/ref/EXP_MRG0.cmap 2022-11-14 20:30:19,954:INFO:Setting up the file structure for the rough assembly 2022-11-14 20:30:19,954:INFO:Rough assembly: moving folder /home/bionano/access/local/jobs/10230251/output/contigs to /home/bionano/access/local/jobs/10230251/output/contigs_roughAssembly 2022-11-14 20:30:19,955:INFO:Rough assembly: moving folder /home/bionano/access/local/jobs/10230251/output/align to /home/bionano/access/local/jobs/10230251/output/align_roughAssembly 2022-11-14 20:30:19,955:INFO:Rough assembly: moving folder /home/bionano/access/local/jobs/10230251/output/ClusterLogs to /home/bionano/access/local/jobs/10230251/output/ClusterLogs_roughAssembly 2022-11-14 20:30:19,955:INFO:************************* Executing stage 8: AutoNoise + SplitBNX ************************* 2022-11-14 20:30:19,955:INFO:checkScanScaling: autoNoise= True 2022-11-14 20:30:19,955:INFO:autoNoise: using rough assembly as reference: /home/bionano/access/local/jobs/10230251/output/ref/EXP_MRG0.cmap 2022-11-14 20:30:19,956:INFO:autoNoise0 2022-11-14 20:30:19,956:INFO:Running jobs for stage AutoNoise0 2022-11-14 20:30:19,956:INFO: Starting Multi-Threaded Process: Autonoise0 2022-11-14 20:30:19,956:INFO:conda_env=None,conda_source=None 2022-11-14 20:30:19,956:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:30:19,975:INFO: START 1: Autonoise0, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:35:43,907:INFO: STOP 1: Autonoise0, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 5.40m RunTime= 0h 5.39m CPUload=2485% bionano1a 2022-11-14 20:35:43,910:INFO: Finished Multi-Threaded Process: Autonoise0 2022-11-14 20:35:43,912:INFO: Autonoise0 completed in: 323.9s Result Found Completed 1 jobs on 56 threads Clock time: 0h 5.40m CPU time : 0h 5.40m Begin machine parsable segment for: Autonoise0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Autonoise0 323.93208 7618.96 412.72 5:23.17 2485% 15113960 Mon Nov 14 14:48:47 CST 2022 2022-11-14 20:35:43,913:INFO:Using scan scaled bnx: /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise0_rescaled.bnx for autoNoise1 2022-11-14 20:35:43,913:INFO:autoNoise1 2022-11-14 20:35:43,913:INFO:Running jobs for stage AutoNoise1 2022-11-14 20:35:43,914:INFO: Starting Multi-Threaded Process: Autonoise1 2022-11-14 20:35:43,914:INFO:conda_env=None,conda_source=None 2022-11-14 20:35:43,914:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:35:43,931:INFO: START 1: Autonoise1, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:41:21,981:INFO: STOP 1: Autonoise1, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 5.63m RunTime= 0h 5.61m CPUload=2628% bionano2a 2022-11-14 20:41:21,982:INFO: Finished Multi-Threaded Process: Autonoise1 2022-11-14 20:41:21,984:INFO: Autonoise1 completed in: 338.0s Result Found Completed 1 jobs on 56 threads Clock time: 0h 5.63m CPU time : 0h 5.63m Begin machine parsable segment for: Autonoise1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Autonoise1 338.04941 8478.51 373.44 5:36.80 2628% 8301316 Mon Nov 14 14:54:24 CST 2022 2022-11-14 20:41:21,984:INFO:Automatically determined noise parameters: NLV:11.663 PLV:6.119 bpp:504.33 readparameters:/home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin res:2.92 sd:0.02943 sf:0.14877 sr:0.0242 2022-11-14 20:41:21,985:INFO:Using scan scaled bnx: /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx 2022-11-14 20:41:21,985:INFO:Generating jobs for SplitBNX 2022-11-14 20:41:25,793:INFO:calculate_n_pairwise: Sorted and filtered file has 737618 molecules, 40427096.0 sites, 253231426140.5 bp length total. Gscale= 1.00, blocks= 13 -> 16 (N=4) 2022-11-14 20:41:25,793:INFO:Changing number of blocks from 20 to 16 2022-11-14 20:41:25,793:INFO:Splitting BNX 2022-11-14 20:41:25,793:INFO:Splitting scan-scaled bnx file: /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx 2022-11-14 20:41:25,794:INFO:Removing 20 split bnx files 2022-11-14 20:41:25,957:INFO:Running jobs for SplitBNX 2022-11-14 20:41:25,957:INFO: Starting Multi-Threaded Process: SplitBNX 2022-11-14 20:41:25,958:INFO:conda_env=None,conda_source=None 2022-11-14 20:41:25,958:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:41:25,981:INFO: START 1: SplitBNX, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 20:42:42,417:INFO: STOP 1: SplitBNX, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 1.27m RunTime= 0h 1.27m CPUload=113% bionano1a 2022-11-14 20:42:42,417:INFO: Finished Multi-Threaded Process: SplitBNX 2022-11-14 20:42:42,418:INFO: SplitBNX completed in: 76.4s Result Found Completed 1 jobs on 56 threads Clock time: 0h 1.27m CPU time : 0h 1.27m Begin machine parsable segment for: SplitBNX time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_SplitBNX 76.43577 78.26 8.17 1:16.02 113% 4093352 Mon Nov 14 14:55:45 CST 2022 2022-11-14 20:42:42,419:INFO:After waiting 0 seconds found: /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_2_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_3_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_4_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_5_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_6_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_7_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_8_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_9_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_10_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_11_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_12_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_13_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_14_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_15_of_16.bnx, /home/bionano/access/local/jobs/10230251/output/all_16_of_16.bnx 2022-11-14 20:42:42,419:INFO:************************* Executing stage 9: Pairwise + Alignmolvref ************************* 2022-11-14 20:42:42,425:INFO:Pairwise ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -o /home/bionano/access/local/jobs/10230251/output/align/exppairwise1of136 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -mres 0.9 -S 0.1 -A 8 -HashMaxHits 200 -MaxSF 0.15 -MinFN 0.10 -MinFP 1.0 -MinSR 0.025 -MaxSE 0.5 -outlier 0.001 -outlierMax 40. -endoutlier 0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -PVres 2 -alignscore -align_format 1 -maptype 0 -f -hashgen 5 4 2.2 1.2 0.05 3.0 1 1 -hash -insertThreads 4 -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -T 1e-11 -minlen 180.0 -stdout -stderr -maxthreads 48 -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 20:42:42,425:INFO:Running jobs for Pairwise 2022-11-14 20:42:42,426:INFO: Starting Multi-Threaded Process: Pairwise 2022-11-14 20:42:42,426:INFO:conda_env=None,conda_source=None 2022-11-14 20:42:42,426:INFO: Running 136 jobs with 56 threads, sleepTime=0.01 2022-11-14 20:42:42,443:INFO: START 1: Pairwise 1 of 1, 48 Thr, 1 R, 136 T, 0 F, 135 Q 2022-11-14 20:42:42,468:INFO: START 2: Pairwise 2 of 1, 48 Thr, 2 R, 136 T, 0 F, 134 Q 2022-11-14 20:42:42,492:INFO: START 3: Pairwise 3 of 1, 48 Thr, 3 R, 136 T, 0 F, 133 Q 2022-11-14 20:42:42,517:INFO: START 4: Pairwise 4 of 1, 48 Thr, 4 R, 136 T, 0 F, 132 Q 2022-11-14 20:42:42,553:INFO: START 5: Pairwise 5 of 1, 48 Thr, 5 R, 136 T, 0 F, 131 Q 2022-11-14 20:42:42,634:INFO: START 6: Pairwise 6 of 1, 48 Thr, 6 R, 136 T, 0 F, 130 Q 2022-11-14 20:42:42,663:INFO: START 7: Pairwise 7 of 1, 48 Thr, 7 R, 136 T, 0 F, 129 Q 2022-11-14 20:42:42,688:INFO: START 8: Pairwise 8 of 1, 48 Thr, 8 R, 136 T, 0 F, 128 Q 2022-11-14 20:42:42,725:INFO: START 9: Pairwise 9 of 1, 48 Thr, 9 R, 136 T, 0 F, 127 Q 2022-11-14 20:42:42,790:INFO: START 10: Pairwise 10 of , 48 Thr, 10 R, 136 T, 0 F, 126 Q 2022-11-14 20:42:42,820:INFO: START 11: Pairwise 11 of , 48 Thr, 11 R, 136 T, 0 F, 125 Q 2022-11-14 20:42:42,845:INFO: START 12: Pairwise 12 of , 48 Thr, 12 R, 136 T, 0 F, 124 Q 2022-11-14 20:42:42,878:INFO: START 13: Pairwise 13 of , 48 Thr, 13 R, 136 T, 0 F, 123 Q 2022-11-14 20:42:42,906:INFO: START 14: Pairwise 14 of , 48 Thr, 14 R, 136 T, 0 F, 122 Q 2022-11-14 20:42:42,931:INFO: START 15: Pairwise 15 of , 48 Thr, 15 R, 136 T, 0 F, 121 Q 2022-11-14 20:42:42,958:INFO: START 16: Pairwise 16 of , 48 Thr, 16 R, 136 T, 0 F, 120 Q 2022-11-14 20:42:42,983:INFO: START 17: Pairwise 17 of , 48 Thr, 17 R, 136 T, 0 F, 119 Q 2022-11-14 20:42:43,023:INFO: START 18: Pairwise 18 of , 48 Thr, 18 R, 136 T, 0 F, 118 Q 2022-11-14 20:42:43,063:INFO: START 19: Pairwise 19 of , 48 Thr, 19 R, 136 T, 0 F, 117 Q 2022-11-14 20:42:43,088:INFO: START 20: Pairwise 20 of , 48 Thr, 20 R, 136 T, 0 F, 116 Q 2022-11-14 20:42:43,115:INFO: START 21: Pairwise 21 of , 48 Thr, 21 R, 136 T, 0 F, 115 Q 2022-11-14 20:42:43,191:INFO: START 22: Pairwise 22 of , 48 Thr, 22 R, 136 T, 0 F, 114 Q 2022-11-14 20:42:43,216:INFO: START 23: Pairwise 23 of , 48 Thr, 23 R, 136 T, 0 F, 113 Q 2022-11-14 20:42:43,241:INFO: START 24: Pairwise 24 of , 48 Thr, 24 R, 136 T, 0 F, 112 Q 2022-11-14 20:42:43,275:INFO: START 25: Pairwise 25 of , 48 Thr, 25 R, 136 T, 0 F, 111 Q 2022-11-14 20:42:43,300:INFO: START 26: Pairwise 26 of , 48 Thr, 26 R, 136 T, 0 F, 110 Q 2022-11-14 20:42:43,330:INFO: START 27: Pairwise 27 of , 48 Thr, 27 R, 136 T, 0 F, 109 Q 2022-11-14 20:42:43,390:INFO: START 28: Pairwise 28 of , 48 Thr, 28 R, 136 T, 0 F, 108 Q 2022-11-14 20:42:43,419:INFO: START 29: Pairwise 29 of , 48 Thr, 29 R, 136 T, 0 F, 107 Q 2022-11-14 20:42:43,447:INFO: START 30: Pairwise 30 of , 48 Thr, 30 R, 136 T, 0 F, 106 Q 2022-11-14 20:42:43,472:INFO: START 31: Pairwise 31 of , 48 Thr, 31 R, 136 T, 0 F, 105 Q 2022-11-14 20:42:43,496:INFO: START 32: Pairwise 32 of , 48 Thr, 32 R, 136 T, 0 F, 104 Q 2022-11-14 20:42:43,521:INFO: START 33: Pairwise 33 of , 48 Thr, 33 R, 136 T, 0 F, 103 Q 2022-11-14 20:42:43,545:INFO: START 34: Pairwise 34 of , 48 Thr, 34 R, 136 T, 0 F, 102 Q 2022-11-14 20:42:43,577:INFO: START 35: Pairwise 35 of , 48 Thr, 35 R, 136 T, 0 F, 101 Q 2022-11-14 20:42:43,602:INFO: START 36: Pairwise 36 of , 48 Thr, 36 R, 136 T, 0 F, 100 Q 2022-11-14 20:42:43,635:INFO: START 37: Pairwise 37 of , 48 Thr, 37 R, 136 T, 0 F, 99 Q 2022-11-14 20:42:43,659:INFO: START 38: Pairwise 38 of , 48 Thr, 38 R, 136 T, 0 F, 98 Q 2022-11-14 20:42:43,698:INFO: START 39: Pairwise 39 of , 48 Thr, 39 R, 136 T, 0 F, 97 Q 2022-11-14 20:42:43,722:INFO: START 40: Pairwise 40 of , 48 Thr, 40 R, 136 T, 0 F, 96 Q 2022-11-14 20:42:43,747:INFO: START 41: Pairwise 41 of , 48 Thr, 41 R, 136 T, 0 F, 95 Q 2022-11-14 20:42:43,771:INFO: START 42: Pairwise 42 of , 48 Thr, 42 R, 136 T, 0 F, 94 Q 2022-11-14 20:42:43,796:INFO: START 43: Pairwise 43 of , 48 Thr, 43 R, 136 T, 0 F, 93 Q 2022-11-14 20:42:43,828:INFO: START 44: Pairwise 44 of , 48 Thr, 44 R, 136 T, 0 F, 92 Q 2022-11-14 20:42:43,852:INFO: START 45: Pairwise 45 of , 48 Thr, 45 R, 136 T, 0 F, 91 Q 2022-11-14 20:42:43,880:INFO: START 46: Pairwise 46 of , 48 Thr, 46 R, 136 T, 0 F, 90 Q 2022-11-14 20:42:43,904:INFO: START 47: Pairwise 47 of , 48 Thr, 47 R, 136 T, 0 F, 89 Q 2022-11-14 20:42:43,929:INFO: START 48: Pairwise 48 of , 48 Thr, 48 R, 136 T, 0 F, 88 Q 2022-11-14 20:42:43,953:INFO: START 49: Pairwise 49 of , 48 Thr, 49 R, 136 T, 0 F, 87 Q 2022-11-14 20:42:43,978:INFO: START 50: Pairwise 50 of , 48 Thr, 50 R, 136 T, 0 F, 86 Q 2022-11-14 20:42:44,004:INFO: START 51: Pairwise 51 of , 48 Thr, 51 R, 136 T, 0 F, 85 Q 2022-11-14 20:42:44,040:INFO: START 52: Pairwise 52 of , 48 Thr, 52 R, 136 T, 0 F, 84 Q 2022-11-14 20:42:44,066:INFO: START 53: Pairwise 53 of , 48 Thr, 53 R, 136 T, 0 F, 83 Q 2022-11-14 20:42:44,094:INFO: START 54: Pairwise 54 of , 48 Thr, 54 R, 136 T, 0 F, 82 Q 2022-11-14 20:42:44,119:INFO: START 55: Pairwise 55 of , 48 Thr, 55 R, 136 T, 0 F, 81 Q 2022-11-14 20:42:44,185:INFO: START 56: Pairwise 56 of , 48 Thr, 56 R, 136 T, 0 F, 80 Q 2022-11-14 20:42:44,217:INFO: START 57: Pairwise 57 of , 48 Thr, 57 R, 136 T, 0 F, 79 Q 2022-11-14 20:42:44,249:INFO: START 58: Pairwise 58 of , 48 Thr, 58 R, 136 T, 0 F, 78 Q 2022-11-14 20:42:44,275:INFO: START 59: Pairwise 59 of , 48 Thr, 59 R, 136 T, 0 F, 77 Q 2022-11-14 20:42:44,299:INFO: START 60: Pairwise 60 of , 48 Thr, 60 R, 136 T, 0 F, 76 Q 2022-11-14 20:42:44,341:INFO: START 61: Pairwise 61 of , 48 Thr, 61 R, 136 T, 0 F, 75 Q 2022-11-14 20:42:44,365:INFO: START 62: Pairwise 62 of , 48 Thr, 62 R, 136 T, 0 F, 74 Q 2022-11-14 20:42:44,389:INFO: START 63: Pairwise 63 of , 48 Thr, 63 R, 136 T, 0 F, 73 Q 2022-11-14 20:42:44,413:INFO: START 64: Pairwise 64 of , 48 Thr, 64 R, 136 T, 0 F, 72 Q 2022-11-14 20:42:44,436:INFO: START 65: Pairwise 65 of , 48 Thr, 65 R, 136 T, 0 F, 71 Q 2022-11-14 20:42:44,467:INFO: START 66: Pairwise 66 of , 48 Thr, 66 R, 136 T, 0 F, 70 Q 2022-11-14 20:42:44,492:INFO: START 67: Pairwise 67 of , 48 Thr, 67 R, 136 T, 0 F, 69 Q 2022-11-14 20:42:44,516:INFO: START 68: Pairwise 68 of , 48 Thr, 68 R, 136 T, 0 F, 68 Q 2022-11-14 20:42:44,541:INFO: START 69: Pairwise 69 of , 48 Thr, 69 R, 136 T, 0 F, 67 Q 2022-11-14 20:42:44,565:INFO: START 70: Pairwise 70 of , 48 Thr, 70 R, 136 T, 0 F, 66 Q 2022-11-14 20:42:44,591:INFO: START 71: Pairwise 71 of , 48 Thr, 71 R, 136 T, 0 F, 65 Q 2022-11-14 20:42:44,615:INFO: START 72: Pairwise 72 of , 48 Thr, 72 R, 136 T, 0 F, 64 Q 2022-11-14 20:42:44,640:INFO: START 73: Pairwise 73 of , 48 Thr, 73 R, 136 T, 0 F, 63 Q 2022-11-14 20:42:44,663:INFO: START 74: Pairwise 74 of , 48 Thr, 74 R, 136 T, 0 F, 62 Q 2022-11-14 20:42:44,687:INFO: START 75: Pairwise 75 of , 48 Thr, 75 R, 136 T, 0 F, 61 Q 2022-11-14 20:42:44,711:INFO: START 76: Pairwise 76 of , 48 Thr, 76 R, 136 T, 0 F, 60 Q 2022-11-14 20:42:44,735:INFO: START 77: Pairwise 77 of , 48 Thr, 77 R, 136 T, 0 F, 59 Q 2022-11-14 20:42:44,759:INFO: START 78: Pairwise 78 of , 48 Thr, 78 R, 136 T, 0 F, 58 Q 2022-11-14 20:42:44,784:INFO: START 79: Pairwise 79 of , 48 Thr, 79 R, 136 T, 0 F, 57 Q 2022-11-14 20:42:44,808:INFO: START 80: Pairwise 80 of , 48 Thr, 80 R, 136 T, 0 F, 56 Q 2022-11-14 20:42:44,843:INFO: START 81: Pairwise 81 of , 48 Thr, 81 R, 136 T, 0 F, 55 Q 2022-11-14 20:42:44,869:INFO: START 82: Pairwise 82 of , 48 Thr, 82 R, 136 T, 0 F, 54 Q 2022-11-14 20:42:44,893:INFO: START 83: Pairwise 83 of , 48 Thr, 83 R, 136 T, 0 F, 53 Q 2022-11-14 20:42:44,917:INFO: START 84: Pairwise 84 of , 48 Thr, 84 R, 136 T, 0 F, 52 Q 2022-11-14 20:42:44,942:INFO: START 85: Pairwise 85 of , 48 Thr, 85 R, 136 T, 0 F, 51 Q 2022-11-14 20:42:44,975:INFO: START 86: Pairwise 86 of , 48 Thr, 86 R, 136 T, 0 F, 50 Q 2022-11-14 20:42:45,000:INFO: START 87: Pairwise 87 of , 48 Thr, 87 R, 136 T, 0 F, 49 Q 2022-11-14 20:42:45,093:INFO: START 88: Pairwise 88 of , 48 Thr, 88 R, 136 T, 0 F, 48 Q 2022-11-14 20:42:45,117:INFO: START 89: Pairwise 89 of , 48 Thr, 89 R, 136 T, 0 F, 47 Q 2022-11-14 20:42:45,150:INFO: START 90: Pairwise 90 of , 48 Thr, 90 R, 136 T, 0 F, 46 Q 2022-11-14 20:42:45,174:INFO: START 91: Pairwise 91 of , 48 Thr, 91 R, 136 T, 0 F, 45 Q 2022-11-14 20:42:45,198:INFO: START 92: Pairwise 92 of , 48 Thr, 92 R, 136 T, 0 F, 44 Q 2022-11-14 20:42:45,221:INFO: START 93: Pairwise 93 of , 48 Thr, 93 R, 136 T, 0 F, 43 Q 2022-11-14 20:42:45,254:INFO: START 94: Pairwise 94 of , 48 Thr, 94 R, 136 T, 0 F, 42 Q 2022-11-14 20:42:45,279:INFO: START 95: Pairwise 95 of , 48 Thr, 95 R, 136 T, 0 F, 41 Q 2022-11-14 20:42:45,303:INFO: START 96: Pairwise 96 of , 48 Thr, 96 R, 136 T, 0 F, 40 Q 2022-11-14 20:42:45,327:INFO: START 97: Pairwise 97 of , 48 Thr, 97 R, 136 T, 0 F, 39 Q 2022-11-14 20:42:45,351:INFO: START 98: Pairwise 98 of , 48 Thr, 98 R, 136 T, 0 F, 38 Q 2022-11-14 20:42:45,384:INFO: START 99: Pairwise 99 of , 48 Thr, 99 R, 136 T, 0 F, 37 Q 2022-11-14 20:42:45,409:INFO: START 100: Pairwise 100 of, 48 Thr, 100 R, 136 T, 0 F, 36 Q 2022-11-14 20:42:45,433:INFO: START 101: Pairwise 101 of, 48 Thr, 101 R, 136 T, 0 F, 35 Q 2022-11-14 20:42:45,458:INFO: START 102: Pairwise 102 of, 48 Thr, 102 R, 136 T, 0 F, 34 Q 2022-11-14 20:42:45,482:INFO: START 103: Pairwise 103 of, 48 Thr, 103 R, 136 T, 0 F, 33 Q 2022-11-14 20:42:45,510:INFO: START 104: Pairwise 104 of, 48 Thr, 104 R, 136 T, 0 F, 32 Q 2022-11-14 20:42:45,584:INFO: START 105: Pairwise 105 of, 48 Thr, 105 R, 136 T, 0 F, 31 Q 2022-11-14 20:42:45,609:INFO: START 106: Pairwise 106 of, 48 Thr, 106 R, 136 T, 0 F, 30 Q 2022-11-14 20:42:45,633:INFO: START 107: Pairwise 107 of, 48 Thr, 107 R, 136 T, 0 F, 29 Q 2022-11-14 20:42:45,658:INFO: START 108: Pairwise 108 of, 48 Thr, 108 R, 136 T, 0 F, 28 Q 2022-11-14 20:42:45,682:INFO: START 109: Pairwise 109 of, 48 Thr, 109 R, 136 T, 0 F, 27 Q 2022-11-14 20:42:45,707:INFO: START 110: Pairwise 110 of, 48 Thr, 110 R, 136 T, 0 F, 26 Q 2022-11-14 20:42:45,731:INFO: START 111: Pairwise 111 of, 48 Thr, 111 R, 136 T, 0 F, 25 Q 2022-11-14 20:42:45,755:INFO: START 112: Pairwise 112 of, 48 Thr, 112 R, 136 T, 0 F, 24 Q 2022-11-14 20:42:45,779:INFO: START 113: Pairwise 113 of, 48 Thr, 113 R, 136 T, 0 F, 23 Q 2022-11-14 20:42:45,803:INFO: START 114: Pairwise 114 of, 48 Thr, 114 R, 136 T, 0 F, 22 Q 2022-11-14 20:42:45,827:INFO: START 115: Pairwise 115 of, 48 Thr, 115 R, 136 T, 0 F, 21 Q 2022-11-14 20:42:45,861:INFO: START 116: Pairwise 116 of, 48 Thr, 116 R, 136 T, 0 F, 20 Q 2022-11-14 20:42:45,885:INFO: START 117: Pairwise 117 of, 48 Thr, 117 R, 136 T, 0 F, 19 Q 2022-11-14 20:42:45,910:INFO: START 118: Pairwise 118 of, 48 Thr, 118 R, 136 T, 0 F, 18 Q 2022-11-14 20:42:45,943:INFO: START 119: Pairwise 119 of, 48 Thr, 119 R, 136 T, 0 F, 17 Q 2022-11-14 20:42:45,976:INFO: START 120: Pairwise 120 of, 48 Thr, 120 R, 136 T, 0 F, 16 Q 2022-11-14 20:42:46,001:INFO: START 121: Pairwise 121 of, 48 Thr, 121 R, 136 T, 0 F, 15 Q 2022-11-14 20:42:46,025:INFO: START 122: Pairwise 122 of, 48 Thr, 122 R, 136 T, 0 F, 14 Q 2022-11-14 20:42:46,058:INFO: START 123: Pairwise 123 of, 48 Thr, 123 R, 136 T, 0 F, 13 Q 2022-11-14 20:42:46,093:INFO: START 124: Pairwise 124 of, 48 Thr, 124 R, 136 T, 0 F, 12 Q 2022-11-14 20:42:46,126:INFO: START 125: Pairwise 125 of, 48 Thr, 125 R, 136 T, 0 F, 11 Q 2022-11-14 20:42:46,152:INFO: START 126: Pairwise 126 of, 48 Thr, 126 R, 136 T, 0 F, 10 Q 2022-11-14 20:42:46,178:INFO: START 127: Pairwise 127 of, 48 Thr, 127 R, 136 T, 0 F, 9 Q 2022-11-14 20:42:46,202:INFO: START 128: Pairwise 128 of, 48 Thr, 128 R, 136 T, 0 F, 8 Q 2022-11-14 20:42:46,226:INFO: START 129: Pairwise 129 of, 48 Thr, 129 R, 136 T, 0 F, 7 Q 2022-11-14 20:42:46,249:INFO: START 130: Pairwise 130 of, 48 Thr, 130 R, 136 T, 0 F, 6 Q 2022-11-14 20:42:46,274:INFO: START 131: Pairwise 131 of, 48 Thr, 131 R, 136 T, 0 F, 5 Q 2022-11-14 20:42:46,299:INFO: START 132: Pairwise 132 of, 48 Thr, 132 R, 136 T, 0 F, 4 Q 2022-11-14 20:42:46,325:INFO: START 133: Pairwise 133 of, 48 Thr, 133 R, 136 T, 0 F, 3 Q 2022-11-14 20:42:46,349:INFO: START 134: Pairwise 134 of, 48 Thr, 134 R, 136 T, 0 F, 2 Q 2022-11-14 20:42:46,374:INFO: START 135: Pairwise 135 of, 48 Thr, 135 R, 136 T, 0 F, 1 Q 2022-11-14 20:42:46,399:INFO: START 136: Pairwise 136 of, 48 Thr, 136 R, 136 T, 0 F, 0 Q 2022-11-14 20:45:30,918:INFO: STOP 17: Pairwise 17 of , 48 Thr, 135 R, 136 T, 1 F, 0 Q TotalTime= 0h 2.80m RunTime= 0h 2.76m CPUload=2008% bionano1b 2022-11-14 20:45:44,273:INFO: STOP 22: Pairwise 22 of , 48 Thr, 134 R, 136 T, 2 F, 0 Q TotalTime= 0h 3.02m RunTime= 0h 2.95m CPUload=2208% bionano2a 2022-11-14 20:45:45,890:INFO: STOP 1: Pairwise 1 of 1, 48 Thr, 133 R, 136 T, 3 F, 0 Q TotalTime= 0h 3.06m RunTime= 0h 2.88m CPUload=1928% bionano2c 2022-11-14 20:45:53,687:INFO: STOP 24: Pairwise 24 of , 48 Thr, 132 R, 136 T, 4 F, 0 Q TotalTime= 0h 3.17m RunTime= 0h 3.11m CPUload=2174% saphyr1a 2022-11-14 20:45:53,710:INFO: STOP 20: Pairwise 20 of , 48 Thr, 131 R, 136 T, 5 F, 0 Q TotalTime= 0h 3.18m RunTime= 0h 3.12m CPUload=2069% bionano2a 2022-11-14 20:45:55,102:INFO: STOP 23: Pairwise 23 of , 48 Thr, 130 R, 136 T, 6 F, 0 Q TotalTime= 0h 3.20m RunTime= 0h 3.15m CPUload=2160% saphyr1a 2022-11-14 20:45:55,120:INFO: STOP 19: Pairwise 19 of , 48 Thr, 129 R, 136 T, 7 F, 0 Q TotalTime= 0h 3.20m RunTime= 0h 3.15m CPUload=2056% bionano1a 2022-11-14 20:45:59,409:INFO: STOP 21: Pairwise 21 of , 48 Thr, 128 R, 136 T, 8 F, 0 Q TotalTime= 0h 3.27m RunTime= 0h 3.19m CPUload=2038% bionano1a 2022-11-14 20:46:24,449:INFO: STOP 8: Pairwise 8 of 1, 48 Thr, 127 R, 136 T, 9 F, 0 Q TotalTime= 0h 3.70m RunTime= 0h 3.64m CPUload=2050% bionano1b 2022-11-14 20:46:38,571:INFO: STOP 10: Pairwise 10 of , 48 Thr, 126 R, 136 T, 10 F, 0 Q TotalTime= 0h 3.93m RunTime= 0h 3.76m CPUload=1974% bionano2c 2022-11-14 20:46:48,282:INFO: STOP 11: Pairwise 11 of , 48 Thr, 125 R, 136 T, 11 F, 0 Q TotalTime= 0h 4.09m RunTime= 0h 4.02m CPUload=1856% saphyr1c 2022-11-14 20:46:48,350:INFO: STOP 2: Pairwise 2 of 1, 48 Thr, 124 R, 136 T, 12 F, 0 Q TotalTime= 0h 4.10m RunTime= 0h 4.02m CPUload=1849% saphyr1c 2022-11-14 20:46:49,575:INFO: STOP 18: Pairwise 18 of , 48 Thr, 123 R, 136 T, 13 F, 0 Q TotalTime= 0h 4.11m RunTime= 0h 4.03m CPUload=1948% bionano2d 2022-11-14 20:46:57,729:INFO: STOP 9: Pairwise 9 of 1, 48 Thr, 122 R, 136 T, 14 F, 0 Q TotalTime= 0h 4.25m RunTime= 0h 4.18m CPUload=1918% bionano2d 2022-11-14 20:46:59,066:INFO: STOP 7: Pairwise 7 of 1, 48 Thr, 121 R, 136 T, 15 F, 0 Q TotalTime= 0h 4.27m RunTime= 0h 4.18m CPUload=1830% bionano2b 2022-11-14 20:46:59,101:INFO: STOP 3: Pairwise 3 of 1, 48 Thr, 120 R, 136 T, 16 F, 0 Q TotalTime= 0h 4.28m RunTime= 0h 4.15m CPUload=1813% bionano1d 2022-11-14 20:47:00,330:INFO: STOP 16: Pairwise 16 of , 48 Thr, 119 R, 136 T, 17 F, 0 Q TotalTime= 0h 4.29m RunTime= 0h 4.16m CPUload=1807% bionano2b 2022-11-14 20:47:00,332:INFO: STOP 15: Pairwise 15 of , 48 Thr, 118 R, 136 T, 18 F, 0 Q TotalTime= 0h 4.29m RunTime= 0h 4.09m CPUload=1847% bionano1c 2022-11-14 20:47:00,356:INFO: STOP 12: Pairwise 12 of , 48 Thr, 117 R, 136 T, 19 F, 0 Q TotalTime= 0h 4.29m RunTime= 0h 4.05m CPUload=1838% bionano1d 2022-11-14 20:47:01,627:INFO: STOP 14: Pairwise 14 of , 48 Thr, 116 R, 136 T, 20 F, 0 Q TotalTime= 0h 4.31m RunTime= 0h 4.17m CPUload=1854% saphyr1b 2022-11-14 20:47:01,651:INFO: STOP 5: Pairwise 5 of 1, 48 Thr, 115 R, 136 T, 21 F, 0 Q TotalTime= 0h 4.32m RunTime= 0h 4.18m CPUload=1838% saphyr1b 2022-11-14 20:47:04,166:INFO: STOP 6: Pairwise 6 of 1, 48 Thr, 114 R, 136 T, 22 F, 0 Q TotalTime= 0h 4.36m RunTime= 0h 4.14m CPUload=1840% bionano1c 2022-11-14 20:47:20,060:INFO: STOP 13: Pairwise 13 of , 48 Thr, 113 R, 136 T, 23 F, 0 Q TotalTime= 0h 4.62m RunTime= 0h 4.56m CPUload=1936% saphyr1d 2022-11-14 20:47:20,062:INFO: STOP 4: Pairwise 4 of 1, 48 Thr, 112 R, 136 T, 24 F, 0 Q TotalTime= 0h 4.63m RunTime= 0h 4.56m CPUload=1907% saphyr1d 2022-11-14 20:48:06,190:INFO: STOP 32: Pairwise 32 of , 48 Thr, 111 R, 136 T, 25 F, 0 Q TotalTime= 0h 5.38m RunTime= 0h 2.07m CPUload=2376% bionano1a 2022-11-14 20:48:23,315:INFO: STOP 26: Pairwise 26 of , 48 Thr, 110 R, 136 T, 26 F, 0 Q TotalTime= 0h 5.67m RunTime= 0h 2.64m CPUload=2411% bionano2a 2022-11-14 20:48:43,335:INFO: STOP 30: Pairwise 30 of , 48 Thr, 109 R, 136 T, 27 F, 0 Q TotalTime= 0h 6.00m RunTime= 0h 2.75m CPUload=2300% bionano1a 2022-11-14 20:48:51,407:INFO: STOP 29: Pairwise 29 of , 48 Thr, 108 R, 136 T, 28 F, 0 Q TotalTime= 0h 6.13m RunTime= 0h 2.89m CPUload=2188% bionano2a 2022-11-14 20:48:53,656:INFO: STOP 28: Pairwise 28 of , 48 Thr, 107 R, 136 T, 29 F, 0 Q TotalTime= 0h 6.17m RunTime= 0h 2.99m CPUload=2365% saphyr1a 2022-11-14 20:49:08,574:INFO: STOP 31: Pairwise 31 of , 48 Thr, 106 R, 136 T, 30 F, 0 Q TotalTime= 0h 6.42m RunTime= 0h 3.19m CPUload=2177% saphyr1a 2022-11-14 20:49:08,587:INFO: STOP 25: Pairwise 25 of , 48 Thr, 105 R, 136 T, 31 F, 0 Q TotalTime= 0h 6.42m RunTime= 0h 3.58m CPUload=2017% bionano1b 2022-11-14 20:49:12,076:INFO: STOP 27: Pairwise 27 of , 48 Thr, 104 R, 136 T, 32 F, 0 Q TotalTime= 0h 6.48m RunTime= 0h 3.40m CPUload=2084% bionano2c 2022-11-14 20:49:51,566:INFO: STOP 46: Pairwise 46 of , 48 Thr, 103 R, 136 T, 33 F, 0 Q TotalTime= 0h 7.13m RunTime= 0h 2.72m CPUload=2050% bionano1c 2022-11-14 20:50:02,996:INFO: STOP 33: Pairwise 33 of , 48 Thr, 102 R, 136 T, 34 F, 0 Q TotalTime= 0h 7.32m RunTime= 0h 3.61m CPUload=2009% bionano1b 2022-11-14 20:50:13,151:INFO: STOP 34: Pairwise 34 of , 48 Thr, 101 R, 136 T, 35 F, 0 Q TotalTime= 0h 7.49m RunTime= 0h 3.54m CPUload=2043% bionano2c 2022-11-14 20:50:39,901:INFO: STOP 41: Pairwise 41 of , 48 Thr, 100 R, 136 T, 36 F, 0 Q TotalTime= 0h 7.94m RunTime= 0h 3.64m CPUload=2027% bionano1c 2022-11-14 20:50:47,589:INFO: STOP 49: Pairwise 49 of , 48 Thr, 99 R, 136 T, 37 F, 0 Q TotalTime= 0h 8.06m RunTime= 0h 2.66m CPUload=2391% bionano1a 2022-11-14 20:50:55,754:INFO: STOP 36: Pairwise 36 of , 48 Thr, 98 R, 136 T, 38 F, 0 Q TotalTime= 0h 8.20m RunTime= 0h 3.97m CPUload=1928% saphyr1c 2022-11-14 20:50:58,980:INFO: STOP 35: Pairwise 35 of , 48 Thr, 97 R, 136 T, 39 F, 0 Q TotalTime= 0h 8.26m RunTime= 0h 4.00m CPUload=1898% saphyr1c 2022-11-14 20:51:04,254:INFO: STOP 43: Pairwise 43 of , 48 Thr, 96 R, 136 T, 40 F, 0 Q TotalTime= 0h 8.34m RunTime= 0h 4.01m CPUload=1896% bionano2b 2022-11-14 20:51:04,258:INFO: STOP 42: Pairwise 42 of , 48 Thr, 95 R, 136 T, 41 F, 0 Q TotalTime= 0h 8.34m RunTime= 0h 3.98m CPUload=1923% bionano1d 2022-11-14 20:51:04,260:INFO: STOP 40: Pairwise 40 of , 48 Thr, 94 R, 136 T, 42 F, 0 Q TotalTime= 0h 8.34m RunTime= 0h 4.01m CPUload=1882% bionano2b 2022-11-14 20:51:04,262:INFO: STOP 39: Pairwise 39 of , 48 Thr, 93 R, 136 T, 43 F, 0 Q TotalTime= 0h 8.34m RunTime= 0h 3.99m CPUload=1902% bionano1d 2022-11-14 20:51:09,288:INFO: STOP 50: Pairwise 50 of , 48 Thr, 92 R, 136 T, 44 F, 0 Q TotalTime= 0h 8.42m RunTime= 0h 2.74m CPUload=2398% bionano2a 2022-11-14 20:51:11,322:INFO: STOP 48: Pairwise 48 of , 48 Thr, 91 R, 136 T, 45 F, 0 Q TotalTime= 0h 8.46m RunTime= 0h 3.79m CPUload=1975% saphyr1d 2022-11-14 20:51:11,323:INFO: STOP 47: Pairwise 47 of , 48 Thr, 90 R, 136 T, 46 F, 0 Q TotalTime= 0h 8.46m RunTime= 0h 3.82m CPUload=1959% saphyr1d 2022-11-14 20:51:24,231:INFO: STOP 45: Pairwise 45 of , 48 Thr, 89 R, 136 T, 47 F, 0 Q TotalTime= 0h 8.67m RunTime= 0h 4.28m CPUload=2040% saphyr1b 2022-11-14 20:51:27,135:INFO: STOP 44: Pairwise 44 of , 48 Thr, 88 R, 136 T, 48 F, 0 Q TotalTime= 0h 8.72m RunTime= 0h 4.32m CPUload=2016% saphyr1b 2022-11-14 20:51:29,041:INFO: STOP 51: Pairwise 51 of , 48 Thr, 87 R, 136 T, 49 F, 0 Q TotalTime= 0h 8.75m RunTime= 0h 2.73m CPUload=2300% bionano1a 2022-11-14 20:51:33,848:INFO: STOP 38: Pairwise 38 of , 48 Thr, 86 R, 136 T, 50 F, 0 Q TotalTime= 0h 8.84m RunTime= 0h 4.52m CPUload=2218% bionano2d 2022-11-14 20:51:38,513:INFO: STOP 52: Pairwise 52 of , 48 Thr, 85 R, 136 T, 51 F, 0 Q TotalTime= 0h 8.91m RunTime= 0h 2.76m CPUload=2281% bionano2a 2022-11-14 20:51:39,440:INFO: STOP 37: Pairwise 37 of , 48 Thr, 84 R, 136 T, 52 F, 0 Q TotalTime= 0h 8.93m RunTime= 0h 4.71m CPUload=2011% bionano2d 2022-11-14 20:52:00,979:INFO: STOP 53: Pairwise 53 of , 48 Thr, 83 R, 136 T, 53 F, 0 Q TotalTime= 0h 9.28m RunTime= 0h 3.09m CPUload=2177% saphyr1a 2022-11-14 20:52:10,929:INFO: STOP 55: Pairwise 55 of , 48 Thr, 82 R, 136 T, 54 F, 0 Q TotalTime= 0h 9.45m RunTime= 0h 3.00m CPUload=2230% saphyr1a 2022-11-14 20:52:36,851:INFO: STOP 54: Pairwise 54 of , 48 Thr, 81 R, 136 T, 55 F, 0 Q TotalTime= 0h 9.88m RunTime= 0h 3.45m CPUload=2071% bionano1b 2022-11-14 20:52:53,198:INFO: STOP 56: Pairwise 56 of , 48 Thr, 80 R, 136 T, 56 F, 0 Q TotalTime= 0h 10.15m RunTime= 0h 3.65m CPUload=1975% bionano2c 2022-11-14 20:52:58,460:INFO: STOP 59: Pairwise 59 of , 48 Thr, 79 R, 136 T, 57 F, 0 Q TotalTime= 0h 10.24m RunTime= 0h 2.72m CPUload=2006% bionano2c 2022-11-14 20:53:20,717:INFO: STOP 57: Pairwise 57 of , 48 Thr, 78 R, 136 T, 58 F, 0 Q TotalTime= 0h 10.61m RunTime= 0h 3.45m CPUload=2081% bionano1c 2022-11-14 20:53:28,593:INFO: STOP 61: Pairwise 61 of , 48 Thr, 77 R, 136 T, 59 F, 0 Q TotalTime= 0h 10.74m RunTime= 0h 2.65m CPUload=2387% bionano1a 2022-11-14 20:53:35,549:INFO: STOP 58: Pairwise 58 of , 48 Thr, 76 R, 136 T, 60 F, 0 Q TotalTime= 0h 10.85m RunTime= 0h 3.51m CPUload=2025% bionano1b 2022-11-14 20:53:52,720:INFO: STOP 68: Pairwise 68 of , 48 Thr, 75 R, 136 T, 61 F, 0 Q TotalTime= 0h 11.14m RunTime= 0h 2.67m CPUload=2355% bionano2a 2022-11-14 20:54:06,342:INFO: STOP 71: Pairwise 71 of , 48 Thr, 74 R, 136 T, 62 F, 0 Q TotalTime= 0h 11.36m RunTime= 0h 2.66m CPUload=2083% saphyr1b 2022-11-14 20:54:17,271:INFO: STOP 73: Pairwise 73 of , 48 Thr, 73 R, 136 T, 63 F, 0 Q TotalTime= 0h 11.54m RunTime= 0h 2.77m CPUload=2309% bionano1a 2022-11-14 20:54:23,794:INFO: STOP 60: Pairwise 60 of , 48 Thr, 72 R, 136 T, 64 F, 0 Q TotalTime= 0h 11.66m RunTime= 0h 3.69m CPUload=1994% bionano1c 2022-11-14 20:54:27,585:INFO: STOP 75: Pairwise 75 of , 48 Thr, 71 R, 136 T, 65 F, 0 Q TotalTime= 0h 11.71m RunTime= 0h 2.77m CPUload=2269% bionano2a 2022-11-14 20:54:51,526:INFO: STOP 77: Pairwise 77 of , 48 Thr, 70 R, 136 T, 66 F, 0 Q TotalTime= 0h 12.11m RunTime= 0h 2.81m CPUload=2361% saphyr1a 2022-11-14 20:54:52,355:INFO: STOP 63: Pairwise 63 of , 48 Thr, 69 R, 136 T, 67 F, 0 Q TotalTime= 0h 12.13m RunTime= 0h 3.79m CPUload=1981% saphyr1c 2022-11-14 20:54:53,812:INFO: STOP 62: Pairwise 62 of , 48 Thr, 68 R, 136 T, 68 F, 0 Q TotalTime= 0h 12.16m RunTime= 0h 3.83m CPUload=1992% saphyr1c 2022-11-14 20:55:00,345:INFO: STOP 70: Pairwise 70 of , 48 Thr, 67 R, 136 T, 69 F, 0 Q TotalTime= 0h 12.26m RunTime= 0h 3.73m CPUload=1982% saphyr1d 2022-11-14 20:55:00,347:INFO: STOP 69: Pairwise 69 of , 48 Thr, 66 R, 136 T, 70 F, 0 Q TotalTime= 0h 12.26m RunTime= 0h 3.75m CPUload=1979% saphyr1d 2022-11-14 20:55:04,655:INFO: STOP 66: Pairwise 66 of , 48 Thr, 65 R, 136 T, 71 F, 0 Q TotalTime= 0h 12.34m RunTime= 0h 3.86m CPUload=1957% bionano1d 2022-11-14 20:55:04,668:INFO: STOP 64: Pairwise 64 of , 48 Thr, 64 R, 136 T, 72 F, 0 Q TotalTime= 0h 12.34m RunTime= 0h 3.86m CPUload=1948% bionano1d 2022-11-14 20:55:05,345:INFO: STOP 67: Pairwise 67 of , 48 Thr, 63 R, 136 T, 73 F, 0 Q TotalTime= 0h 12.35m RunTime= 0h 3.92m CPUload=1945% bionano2b 2022-11-14 20:55:05,346:INFO: STOP 65: Pairwise 65 of , 48 Thr, 62 R, 136 T, 74 F, 0 Q TotalTime= 0h 12.35m RunTime= 0h 3.92m CPUload=1959% bionano2b 2022-11-14 20:55:07,353:INFO: STOP 72: Pairwise 72 of , 48 Thr, 61 R, 136 T, 75 F, 0 Q TotalTime= 0h 12.38m RunTime= 0h 3.63m CPUload=2044% saphyr1b 2022-11-14 20:55:20,711:INFO: STOP 78: Pairwise 78 of , 48 Thr, 60 R, 136 T, 76 F, 0 Q TotalTime= 0h 12.60m RunTime= 0h 3.12m CPUload=2148% saphyr1a 2022-11-14 20:55:36,045:INFO: STOP 74: Pairwise 74 of , 48 Thr, 59 R, 136 T, 77 F, 0 Q TotalTime= 0h 12.86m RunTime= 0h 3.95m CPUload=2056% bionano2d 2022-11-14 20:55:40,611:INFO: STOP 76: Pairwise 76 of , 48 Thr, 58 R, 136 T, 78 F, 0 Q TotalTime= 0h 12.93m RunTime= 0h 3.98m CPUload=2071% bionano2d 2022-11-14 20:55:59,604:INFO: STOP 82: Pairwise 82 of , 48 Thr, 57 R, 136 T, 79 F, 0 Q TotalTime= 0h 13.25m RunTime= 0h 2.61m CPUload=2060% bionano1c 2022-11-14 20:56:11,203:INFO: STOP 79: Pairwise 79 of , 48 Thr, 56 R, 136 T, 80 F, 0 Q TotalTime= 0h 13.44m RunTime= 0h 3.53m CPUload=2059% bionano1b 2022-11-14 20:56:14,275:INFO: STOP 83: Pairwise 83 of , 48 Thr, 55 R, 136 T, 81 F, 0 Q TotalTime= 0h 13.49m RunTime= 0h 2.72m CPUload=2373% bionano1a 2022-11-14 20:56:32,707:INFO: STOP 85: Pairwise 85 of , 48 Thr, 54 R, 136 T, 82 F, 0 Q TotalTime= 0h 13.80m RunTime= 0h 2.60m CPUload=2419% bionano2a 2022-11-14 20:57:01,281:INFO: STOP 87: Pairwise 87 of , 48 Thr, 53 R, 136 T, 83 F, 0 Q TotalTime= 0h 14.27m RunTime= 0h 2.68m CPUload=2383% bionano1a 2022-11-14 20:57:03,065:INFO: STOP 80: Pairwise 80 of , 48 Thr, 52 R, 136 T, 84 F, 0 Q TotalTime= 0h 14.30m RunTime= 0h 4.11m CPUload=2036% bionano2c 2022-11-14 20:57:05,366:INFO: STOP 81: Pairwise 81 of , 48 Thr, 51 R, 136 T, 85 F, 0 Q TotalTime= 0h 14.34m RunTime= 0h 4.06m CPUload=2124% bionano2c 2022-11-14 20:57:12,561:INFO: STOP 84: Pairwise 84 of , 48 Thr, 50 R, 136 T, 86 F, 0 Q TotalTime= 0h 14.46m RunTime= 0h 3.57m CPUload=2031% bionano1b 2022-11-14 20:57:14,194:INFO: STOP 89: Pairwise 89 of , 48 Thr, 49 R, 136 T, 87 F, 0 Q TotalTime= 0h 14.48m RunTime= 0h 2.74m CPUload=2333% bionano2a 2022-11-14 20:57:44,241:INFO: STOP 86: Pairwise 86 of , 48 Thr, 48 R, 136 T, 88 F, 0 Q TotalTime= 0h 14.99m RunTime= 0h 3.61m CPUload=2063% saphyr1b 2022-11-14 20:57:49,959:INFO: STOP 92: Pairwise 92 of , 48 Thr, 47 R, 136 T, 89 F, 0 Q TotalTime= 0h 15.08m RunTime= 0h 2.86m CPUload=1990% saphyr1c 2022-11-14 20:57:50,479:INFO: STOP 91: Pairwise 91 of , 48 Thr, 46 R, 136 T, 90 F, 0 Q TotalTime= 0h 15.09m RunTime= 0h 2.95m CPUload=2229% saphyr1a 2022-11-14 20:57:58,921:INFO: STOP 88: Pairwise 88 of , 48 Thr, 45 R, 136 T, 91 F, 0 Q TotalTime= 0h 15.23m RunTime= 0h 3.53m CPUload=2103% bionano1c 2022-11-14 20:58:19,497:INFO: STOP 100: Pairwise 100 of, 48 Thr, 44 R, 136 T, 92 F, 0 Q TotalTime= 0h 15.57m RunTime= 0h 2.93m CPUload=2244% saphyr1a 2022-11-14 20:58:19,979:INFO: STOP 101: Pairwise 101 of, 48 Thr, 43 R, 136 T, 93 F, 0 Q TotalTime= 0h 15.58m RunTime= 0h 2.69m CPUload=2110% bionano2d 2022-11-14 20:58:24,818:INFO: STOP 90: Pairwise 90 of , 48 Thr, 42 R, 136 T, 94 F, 0 Q TotalTime= 0h 15.66m RunTime= 0h 3.51m CPUload=2090% saphyr1c 2022-11-14 20:58:46,336:INFO: STOP 99: Pairwise 99 of , 48 Thr, 41 R, 136 T, 95 F, 0 Q TotalTime= 0h 16.02m RunTime= 0h 3.62m CPUload=2133% saphyr1b 2022-11-14 20:58:59,458:INFO: STOP 95: Pairwise 95 of , 48 Thr, 40 R, 136 T, 96 F, 0 Q TotalTime= 0h 16.24m RunTime= 0h 3.82m CPUload=1980% bionano1d 2022-11-14 20:59:00,760:INFO: STOP 96: Pairwise 96 of , 48 Thr, 39 R, 136 T, 97 F, 0 Q TotalTime= 0h 16.26m RunTime= 0h 3.82m CPUload=1974% bionano1d 2022-11-14 20:59:02,460:INFO: STOP 97: Pairwise 97 of , 48 Thr, 38 R, 136 T, 98 F, 0 Q TotalTime= 0h 16.29m RunTime= 0h 3.87m CPUload=1980% bionano2b 2022-11-14 20:59:04,121:INFO: STOP 98: Pairwise 98 of , 48 Thr, 37 R, 136 T, 99 F, 0 Q TotalTime= 0h 16.31m RunTime= 0h 3.87m CPUload=1970% bionano2b 2022-11-14 20:59:04,930:INFO: STOP 94: Pairwise 94 of , 48 Thr, 36 R, 136 T, 100 F, 0 Q TotalTime= 0h 16.33m RunTime= 0h 3.99m CPUload=1926% saphyr1d 2022-11-14 20:59:04,932:INFO: STOP 93: Pairwise 93 of , 48 Thr, 35 R, 136 T, 101 F, 0 Q TotalTime= 0h 16.33m RunTime= 0h 3.99m CPUload=1935% saphyr1d 2022-11-14 20:59:06,039:INFO: STOP 105: Pairwise 105 of, 48 Thr, 34 R, 136 T, 102 F, 0 Q TotalTime= 0h 16.34m RunTime= 0h 2.83m CPUload=2258% bionano1a 2022-11-14 20:59:10,012:INFO: STOP 106: Pairwise 106 of, 48 Thr, 33 R, 136 T, 103 F, 0 Q TotalTime= 0h 16.41m RunTime= 0h 2.59m CPUload=2370% bionano2a 2022-11-14 20:59:20,988:INFO: STOP 102: Pairwise 102 of, 48 Thr, 32 R, 136 T, 104 F, 0 Q TotalTime= 0h 16.59m RunTime= 0h 3.64m CPUload=2067% bionano2d 2022-11-14 20:59:38,954:INFO: STOP 104: Pairwise 104 of, 48 Thr, 31 R, 136 T, 105 F, 0 Q TotalTime= 0h 16.89m RunTime= 0h 3.42m CPUload=2145% bionano1b 2022-11-14 20:59:41,663:INFO: STOP 107: Pairwise 107 of, 48 Thr, 30 R, 136 T, 106 F, 0 Q TotalTime= 0h 16.93m RunTime= 0h 2.66m CPUload=2338% bionano1a 2022-11-14 20:59:44,000:INFO: STOP 103: Pairwise 103 of, 48 Thr, 29 R, 136 T, 107 F, 0 Q TotalTime= 0h 16.98m RunTime= 0h 3.67m CPUload=1999% bionano1c 2022-11-14 21:00:13,604:INFO: STOP 111: Pairwise 111 of, 48 Thr, 28 R, 136 T, 108 F, 0 Q TotalTime= 0h 17.46m RunTime= 0h 2.95m CPUload=2037% bionano2a 2022-11-14 21:00:21,640:INFO: STOP 109: Pairwise 109 of, 48 Thr, 27 R, 136 T, 109 F, 0 Q TotalTime= 0h 17.60m RunTime= 0h 3.23m CPUload=1898% bionano2c 2022-11-14 21:00:40,120:INFO: STOP 108: Pairwise 108 of, 48 Thr, 26 R, 136 T, 110 F, 0 Q TotalTime= 0h 17.91m RunTime= 0h 3.58m CPUload=2246% bionano2c 2022-11-14 21:00:59,571:INFO: STOP 116: Pairwise 116 of, 48 Thr, 25 R, 136 T, 111 F, 0 Q TotalTime= 0h 18.23m RunTime= 0h 2.63m CPUload=2062% bionano2d 2022-11-14 21:01:09,758:INFO: STOP 127: Pairwise 127 of, 48 Thr, 24 R, 136 T, 112 F, 0 Q TotalTime= 0h 18.39m RunTime= 0h 1.96m CPUload=2424% bionano2a 2022-11-14 21:01:12,621:INFO: STOP 117: Pairwise 117 of, 48 Thr, 23 R, 136 T, 113 F, 0 Q TotalTime= 0h 18.45m RunTime= 0h 2.85m CPUload=2315% saphyr1a 2022-11-14 21:01:15,326:INFO: STOP 110: Pairwise 110 of, 48 Thr, 22 R, 136 T, 114 F, 0 Q TotalTime= 0h 18.49m RunTime= 0h 4.00m CPUload=1856% bionano1b 2022-11-14 21:01:16,757:INFO: STOP 114: Pairwise 114 of, 48 Thr, 21 R, 136 T, 115 F, 0 Q TotalTime= 0h 18.52m RunTime= 0h 3.40m CPUload=1866% saphyr1a 2022-11-14 21:01:36,691:INFO: STOP 115: Pairwise 115 of, 48 Thr, 20 R, 136 T, 116 F, 0 Q TotalTime= 0h 18.85m RunTime= 0h 3.59m CPUload=1951% bionano1c 2022-11-14 21:01:44,653:INFO: STOP 113: Pairwise 113 of, 48 Thr, 19 R, 136 T, 117 F, 0 Q TotalTime= 0h 18.98m RunTime= 0h 3.88m CPUload=1816% saphyr1c 2022-11-14 21:01:47,496:INFO: STOP 126: Pairwise 126 of, 48 Thr, 18 R, 136 T, 118 F, 0 Q TotalTime= 0h 19.02m RunTime= 0h 2.68m CPUload=2314% bionano1a 2022-11-14 21:01:50,511:INFO: STOP 122: Pairwise 122 of, 48 Thr, 17 R, 136 T, 119 F, 0 Q TotalTime= 0h 19.07m RunTime= 0h 2.75m CPUload=2019% bionano2b 2022-11-14 21:01:52,795:INFO: STOP 118: Pairwise 118 of, 48 Thr, 16 R, 136 T, 120 F, 0 Q TotalTime= 0h 19.11m RunTime= 0h 3.43m CPUload=2148% saphyr1c 2022-11-14 21:01:57,930:INFO: STOP 112: Pairwise 112 of, 48 Thr, 15 R, 136 T, 121 F, 0 Q TotalTime= 0h 19.20m RunTime= 0h 4.18m CPUload=1811% saphyr1b 2022-11-14 21:02:04,946:INFO: STOP 131: Pairwise 131 of, 48 Thr, 14 R, 136 T, 122 F, 0 Q TotalTime= 0h 19.31m RunTime= 0h 2.32m CPUload=2348% bionano1c 2022-11-14 21:02:14,402:INFO: STOP 129: Pairwise 129 of, 48 Thr, 13 R, 136 T, 123 F, 0 Q TotalTime= 0h 19.47m RunTime= 0h 2.53m CPUload=2804% bionano1b 2022-11-14 21:02:16,548:INFO: STOP 130: Pairwise 130 of, 48 Thr, 12 R, 136 T, 124 F, 0 Q TotalTime= 0h 19.50m RunTime= 0h 2.54m CPUload=2418% bionano1a 2022-11-14 21:02:20,970:INFO: STOP 119: Pairwise 119 of, 48 Thr, 11 R, 136 T, 125 F, 0 Q TotalTime= 0h 19.58m RunTime= 0h 3.53m CPUload=2287% saphyr1b 2022-11-14 21:02:22,876:INFO: STOP 123: Pairwise 123 of, 48 Thr, 10 R, 136 T, 126 F, 0 Q TotalTime= 0h 19.61m RunTime= 0h 3.27m CPUload=2251% bionano2b 2022-11-14 21:02:53,813:INFO: STOP 132: Pairwise 132 of, 48 Thr, 9 R, 136 T, 127 F, 0 Q TotalTime= 0h 20.13m RunTime= 0h 2.62m CPUload=2422% bionano2a 2022-11-14 21:02:54,147:INFO: STOP 121: Pairwise 121 of, 48 Thr, 8 R, 136 T, 128 F, 0 Q TotalTime= 0h 20.14m RunTime= 0h 3.83m CPUload=1938% bionano1d 2022-11-14 21:02:54,149:INFO: STOP 120: Pairwise 120 of, 48 Thr, 7 R, 136 T, 129 F, 0 Q TotalTime= 0h 20.14m RunTime= 0h 3.83m CPUload=1940% bionano1d 2022-11-14 21:02:57,152:INFO: STOP 124: Pairwise 124 of, 48 Thr, 6 R, 136 T, 130 F, 0 Q TotalTime= 0h 20.18m RunTime= 0h 3.82m CPUload=1978% saphyr1d 2022-11-14 21:02:58,206:INFO: STOP 125: Pairwise 125 of, 48 Thr, 5 R, 136 T, 131 F, 0 Q TotalTime= 0h 20.20m RunTime= 0h 3.82m CPUload=1966% saphyr1d 2022-11-14 21:02:59,862:INFO: STOP 128: Pairwise 128 of, 48 Thr, 4 R, 136 T, 132 F, 0 Q TotalTime= 0h 20.23m RunTime= 0h 3.60m CPUload=2063% bionano2d 2022-11-14 21:03:13,808:INFO: STOP 136: Pairwise 136 of, 48 Thr, 3 R, 136 T, 133 F, 0 Q TotalTime= 0h 20.46m RunTime= 0h 2.04m CPUload=2232% bionano2a 2022-11-14 21:03:35,940:INFO: STOP 134: Pairwise 134 of, 48 Thr, 2 R, 136 T, 134 F, 0 Q TotalTime= 0h 20.83m RunTime= 0h 2.88m CPUload=1952% bionano2c 2022-11-14 21:03:48,991:INFO: STOP 135: Pairwise 135 of, 48 Thr, 1 R, 136 T, 135 F, 0 Q TotalTime= 0h 21.04m RunTime= 0h 2.78m CPUload=2519% bionano2d 2022-11-14 21:03:49,015:INFO: STOP 133: Pairwise 133 of, 48 Thr, 0 R, 136 T, 136 F, 0 Q TotalTime= 0h 21.04m RunTime= 0h 3.41m CPUload=2238% bionano2c 2022-11-14 21:03:49,016:INFO: Finished Multi-Threaded Process: Pairwise 2022-11-14 21:03:49,035:INFO: Pairwise 1 of 136 completed in: 183.4s Result Found Pairwise 2 of 136 completed in: 245.9s Result Found Pairwise 3 of 136 completed in: 256.6s Result Found Pairwise 4 of 136 completed in: 277.5s Result Found Pairwise 5 of 136 completed in: 259.1s Result Found Pairwise 6 of 136 completed in: 261.5s Result Found Pairwise 7 of 136 completed in: 256.4s Result Found Pairwise 8 of 136 completed in: 221.8s Result Found Pairwise 9 of 136 completed in: 255.0s Result Found Pairwise 10 of 136 completed in: 235.8s Result Found Pairwise 11 of 136 completed in: 245.5s Result Found Pairwise 12 of 136 completed in: 257.5s Result Found Pairwise 13 of 136 completed in: 277.2s Result Found Pairwise 14 of 136 completed in: 258.7s Result Found Pairwise 15 of 136 completed in: 257.4s Result Found Pairwise 16 of 136 completed in: 257.4s Result Found Pairwise 17 of 136 completed in: 167.9s Result Found Pairwise 18 of 136 completed in: 246.6s Result Found Pairwise 19 of 136 completed in: 192.1s Result Found Pairwise 20 of 136 completed in: 190.6s Result Found Pairwise 21 of 136 completed in: 196.3s Result Found Pairwise 22 of 136 completed in: 181.1s Result Found Pairwise 23 of 136 completed in: 191.9s Result Found Pairwise 24 of 136 completed in: 190.4s Result Found Pairwise 25 of 136 completed in: 385.3s Result Found Pairwise 26 of 136 completed in: 340.0s Result Found Pairwise 27 of 136 completed in: 388.7s Result Found Pairwise 28 of 136 completed in: 370.3s Result Found Pairwise 29 of 136 completed in: 368.0s Result Found Pairwise 30 of 136 completed in: 359.9s Result Found Pairwise 31 of 136 completed in: 385.1s Result Found Pairwise 32 of 136 completed in: 322.7s Result Found Pairwise 33 of 136 completed in: 439.5s Result Found Pairwise 34 of 136 completed in: 449.6s Result Found Pairwise 35 of 136 completed in: 495.4s Result Found Pairwise 36 of 136 completed in: 492.2s Result Found Pairwise 37 of 136 completed in: 535.8s Result Found Pairwise 38 of 136 completed in: 530.2s Result Found Pairwise 39 of 136 completed in: 500.6s Result Found Pairwise 40 of 136 completed in: 500.5s Result Found Pairwise 41 of 136 completed in: 476.2s Result Found Pairwise 42 of 136 completed in: 500.5s Result Found Pairwise 43 of 136 completed in: 500.5s Result Found Pairwise 44 of 136 completed in: 523.3s Result Found Pairwise 45 of 136 completed in: 520.4s Result Found Pairwise 46 of 136 completed in: 427.7s Result Found Pairwise 47 of 136 completed in: 507.4s Result Found Pairwise 48 of 136 completed in: 507.4s Result Found Pairwise 49 of 136 completed in: 483.6s Result Found Pairwise 50 of 136 completed in: 505.3s Result Found Pairwise 51 of 136 completed in: 525.0s Result Found Pairwise 52 of 136 completed in: 534.5s Result Found Pairwise 53 of 136 completed in: 556.9s Result Found Pairwise 54 of 136 completed in: 592.8s Result Found Pairwise 55 of 136 completed in: 566.8s Result Found Pairwise 56 of 136 completed in: 609.0s Result Found Pairwise 57 of 136 completed in: 636.5s Result Found Pairwise 58 of 136 completed in: 651.3s Result Found Pairwise 59 of 136 completed in: 614.2s Result Found Pairwise 60 of 136 completed in: 699.5s Result Found Pairwise 61 of 136 completed in: 644.3s Result Found Pairwise 62 of 136 completed in: 729.4s Result Found Pairwise 63 of 136 completed in: 728.0s Result Found Pairwise 64 of 136 completed in: 740.3s Result Found Pairwise 65 of 136 completed in: 740.9s Result Found Pairwise 66 of 136 completed in: 740.2s Result Found Pairwise 67 of 136 completed in: 740.9s Result Found Pairwise 68 of 136 completed in: 668.2s Result Found Pairwise 69 of 136 completed in: 735.8s Result Found Pairwise 70 of 136 completed in: 735.8s Result Found Pairwise 71 of 136 completed in: 681.8s Result Found Pairwise 72 of 136 completed in: 742.7s Result Found Pairwise 73 of 136 completed in: 692.6s Result Found Pairwise 74 of 136 completed in: 771.4s Result Found Pairwise 75 of 136 completed in: 702.9s Result Found Pairwise 76 of 136 completed in: 775.9s Result Found Pairwise 77 of 136 completed in: 726.8s Result Found Pairwise 78 of 136 completed in: 756.0s Result Found Pairwise 79 of 136 completed in: 806.4s Result Found Pairwise 80 of 136 completed in: 858.3s Result Found Pairwise 81 of 136 completed in: 860.5s Result Found Pairwise 82 of 136 completed in: 794.7s Result Found Pairwise 83 of 136 completed in: 809.4s Result Found Pairwise 84 of 136 completed in: 867.6s Result Found Pairwise 85 of 136 completed in: 827.8s Result Found Pairwise 86 of 136 completed in: 899.3s Result Found Pairwise 87 of 136 completed in: 856.3s Result Found Pairwise 88 of 136 completed in: 913.8s Result Found Pairwise 89 of 136 completed in: 869.1s Result Found Pairwise 90 of 136 completed in: 939.7s Result Found Pairwise 91 of 136 completed in: 905.3s Result Found Pairwise 92 of 136 completed in: 904.8s Result Found Pairwise 93 of 136 completed in: 979.7s Result Found Pairwise 94 of 136 completed in: 979.7s Result Found Pairwise 95 of 136 completed in: 974.2s Result Found Pairwise 96 of 136 completed in: 975.5s Result Found Pairwise 97 of 136 completed in: 977.1s Result Found Pairwise 98 of 136 completed in: 978.8s Result Found Pairwise 99 of 136 completed in: 961.0s Result Found Pairwise 100 of 136 completed in: 934.1s Result Found Pairwise 101 of 136 completed in: 934.5s Result Found Pairwise 102 of 136 completed in: 995.5s Result Found Pairwise 103 of 136 completed in: 1018.5s Result Found Pairwise 104 of 136 completed in: 1013.4s Result Found Pairwise 105 of 136 completed in: 980.5s Result Found Pairwise 106 of 136 completed in: 984.4s Result Found Pairwise 107 of 136 completed in: 1016.0s Result Found Pairwise 108 of 136 completed in: 1074.5s Result Found Pairwise 109 of 136 completed in: 1056.0s Result Found Pairwise 110 of 136 completed in: 1109.6s Result Found Pairwise 111 of 136 completed in: 1047.9s Result Found Pairwise 112 of 136 completed in: 1152.2s Result Found Pairwise 113 of 136 completed in: 1138.9s Result Found Pairwise 114 of 136 completed in: 1111.0s Result Found Pairwise 115 of 136 completed in: 1130.9s Result Found Pairwise 116 of 136 completed in: 1093.7s Result Found Pairwise 117 of 136 completed in: 1106.7s Result Found Pairwise 118 of 136 completed in: 1146.9s Result Found Pairwise 119 of 136 completed in: 1175.0s Result Found Pairwise 120 of 136 completed in: 1208.2s Result Found Pairwise 121 of 136 completed in: 1208.1s Result Found Pairwise 122 of 136 completed in: 1144.5s Result Found Pairwise 123 of 136 completed in: 1176.8s Result Found Pairwise 124 of 136 completed in: 1211.1s Result Found Pairwise 125 of 136 completed in: 1212.1s Result Found Pairwise 126 of 136 completed in: 1141.3s Result Found Pairwise 127 of 136 completed in: 1103.6s Result Found Pairwise 128 of 136 completed in: 1213.7s Result Found Pairwise 129 of 136 completed in: 1168.2s Result Found Pairwise 130 of 136 completed in: 1170.3s Result Found Pairwise 131 of 136 completed in: 1158.7s Result Found Pairwise 132 of 136 completed in: 1207.5s Result Found Pairwise 133 of 136 completed in: 1262.7s Result Found Pairwise 134 of 136 completed in: 1249.6s Result Found Pairwise 135 of 136 completed in: 1262.6s Result Found Pairwise 136 of 136 completed in: 1227.4s Result Found Completed 136 jobs on 56 threads Clock time: 0h 21.11m CPU time : 26h 55.08m Begin machine parsable segment for: Pairwise time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_pairwise1of136 183.44685 3243.33 88.06 2:52.70 1928% 2030872 Mon Nov 14 14:58:46 CST 2022 time_line jobs+10230251+startPipeline_pairwise2of136 245.88222 4327.35 127.54 4:00.91 1849% 2366704 Mon Nov 14 15:03:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise3of136 256.60835 4390.06 127.70 4:09.15 1813% 2367088 Mon Nov 14 14:59:57 CST 2022 time_line jobs+10230251+startPipeline_pairwise4of136 277.54474 5084.97 132.83 4:33.57 1907% 2363696 Mon Nov 14 15:09:57 CST 2022 time_line jobs+10230251+startPipeline_pairwise5of136 259.09811 4477.80 131.42 4:10.72 1838% 2367784 Mon Nov 14 14:40:37 CST 2022 time_line jobs+10230251+startPipeline_pairwise6of136 261.53232 4444.63 131.30 4:08.65 1840% 2364760 Mon Nov 14 15:00:02 CST 2022 time_line jobs+10230251+startPipeline_pairwise7of136 256.40289 4448.24 136.84 4:10.47 1830% 2366868 Mon Nov 14 14:59:58 CST 2022 time_line jobs+10230251+startPipeline_pairwise8of136 221.76012 4352.89 126.14 3:38.38 2050% 2369656 Mon Nov 14 14:59:25 CST 2022 time_line jobs+10230251+startPipeline_pairwise9of136 255.00429 4677.26 132.11 4:10.65 1918% 2365756 Mon Nov 14 14:59:57 CST 2022 time_line jobs+10230251+startPipeline_pairwise10of136 235.78130 4319.90 128.44 3:45.32 1974% 2362344 Mon Nov 14 14:59:39 CST 2022 time_line jobs+10230251+startPipeline_pairwise11of136 245.46232 4339.14 132.31 4:00.83 1856% 2363328 Mon Nov 14 15:03:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise12of136 257.51074 4341.23 126.90 4:03.03 1838% 2364340 Mon Nov 14 14:59:51 CST 2022 time_line jobs+10230251+startPipeline_pairwise13of136 277.18157 5161.42 133.76 4:33.41 1936% 2367932 Mon Nov 14 15:09:57 CST 2022 time_line jobs+10230251+startPipeline_pairwise14of136 258.72062 4514.37 128.58 4:10.40 1854% 2367860 Mon Nov 14 14:40:37 CST 2022 time_line jobs+10230251+startPipeline_pairwise15of136 257.40019 4394.48 133.59 4:05.03 1847% 2361224 Mon Nov 14 14:59:58 CST 2022 time_line jobs+10230251+startPipeline_pairwise16of136 257.37124 4366.03 139.00 4:09.29 1807% 2363672 Mon Nov 14 14:59:58 CST 2022 time_line jobs+10230251+startPipeline_pairwise17of136 167.93522 3237.33 88.90 2:45.58 2008% 2032992 Mon Nov 14 14:58:32 CST 2022 time_line jobs+10230251+startPipeline_pairwise18of136 246.55234 4580.25 131.71 4:01.77 1948% 2365008 Mon Nov 14 14:59:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise19of136 192.05665 3773.45 111.10 3:08.86 2056% 2362300 Mon Nov 14 14:58:56 CST 2022 time_line jobs+10230251+startPipeline_pairwise20of136 190.62261 3763.96 110.47 3:07.21 2069% 2365776 Mon Nov 14 14:58:55 CST 2022 time_line jobs+10230251+startPipeline_pairwise21of136 196.29439 3789.78 112.68 3:11.44 2038% 2365332 Mon Nov 14 14:58:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise22of136 181.08176 3799.65 106.07 2:56.85 2208% 2368928 Mon Nov 14 14:58:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise23of136 191.88573 3951.03 127.67 3:08.81 2160% 2374568 Mon Nov 14 14:45:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise24of136 190.44593 3922.89 132.75 3:06.50 2174% 2368192 Mon Nov 14 14:45:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise25of136 385.31165 4205.36 128.36 3:34.78 2017% 2360460 Mon Nov 14 15:02:09 CST 2022 time_line jobs+10230251+startPipeline_pairwise26of136 340.01553 3698.88 118.82 2:38.34 2411% 2366320 Mon Nov 14 15:01:25 CST 2022 time_line jobs+10230251+startPipeline_pairwise27of136 388.74622 4124.35 128.54 3:24.06 2084% 2364236 Mon Nov 14 15:02:13 CST 2022 time_line jobs+10230251+startPipeline_pairwise28of136 370.26583 4100.03 137.97 2:59.18 2365% 2377000 Mon Nov 14 14:48:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise29of136 367.98759 3683.66 113.27 2:53.51 2188% 2365924 Mon Nov 14 15:01:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise30of136 359.88721 3690.34 110.67 2:45.22 2300% 2363764 Mon Nov 14 15:01:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise31of136 385.10232 4032.42 138.69 3:11.59 2177% 2362628 Mon Nov 14 14:49:06 CST 2022 time_line jobs+10230251+startPipeline_pairwise32of136 322.69293 2884.13 73.53 2:04.47 2376% 2032720 Mon Nov 14 15:01:07 CST 2022 time_line jobs+10230251+startPipeline_pairwise33of136 439.47428 4229.20 127.12 3:36.78 2009% 2364040 Mon Nov 14 15:03:04 CST 2022 time_line jobs+10230251+startPipeline_pairwise34of136 449.60563 4214.34 126.04 3:32.45 2043% 2367872 Mon Nov 14 15:03:14 CST 2022 time_line jobs+10230251+startPipeline_pairwise35of136 495.40312 4426.10 134.03 4:00.18 1898% 2367000 Mon Nov 14 15:07:23 CST 2022 time_line jobs+10230251+startPipeline_pairwise36of136 492.15193 4454.10 132.67 3:57.88 1928% 2366504 Mon Nov 14 15:07:20 CST 2022 time_line jobs+10230251+startPipeline_pairwise37of136 535.80525 5540.81 140.30 4:42.42 2011% 2373280 Mon Nov 14 15:04:41 CST 2022 time_line jobs+10230251+startPipeline_pairwise38of136 530.18809 5880.49 139.16 4:31.38 2218% 2365884 Mon Nov 14 15:04:35 CST 2022 time_line jobs+10230251+startPipeline_pairwise39of136 500.56384 4413.50 135.96 3:59.07 1902% 2363072 Mon Nov 14 15:04:05 CST 2022 time_line jobs+10230251+startPipeline_pairwise40of136 500.53712 4399.78 131.29 4:00.68 1882% 2367832 Mon Nov 14 15:04:05 CST 2022 time_line jobs+10230251+startPipeline_pairwise41of136 476.15448 4290.74 130.23 3:38.06 2027% 2366084 Mon Nov 14 15:03:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise42of136 500.48610 4459.29 137.51 3:58.99 1923% 2366700 Mon Nov 14 15:04:05 CST 2022 time_line jobs+10230251+startPipeline_pairwise43of136 500.45804 4421.71 135.69 4:00.32 1896% 2369172 Mon Nov 14 15:04:05 CST 2022 time_line jobs+10230251+startPipeline_pairwise44of136 523.30735 5084.50 137.37 4:18.91 2016% 2363196 Mon Nov 14 14:45:00 CST 2022 time_line jobs+10230251+startPipeline_pairwise45of136 520.37885 5104.77 134.35 4:16.70 2040% 2363344 Mon Nov 14 14:44:58 CST 2022 time_line jobs+10230251+startPipeline_pairwise46of136 427.68666 3250.88 88.89 2:42.90 2050% 2029644 Mon Nov 14 15:02:52 CST 2022 time_line jobs+10230251+startPipeline_pairwise47of136 507.41903 4357.42 127.33 3:48.82 1959% 2367456 Mon Nov 14 15:13:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise48of136 507.39285 4353.57 132.34 3:47.02 1975% 2366172 Mon Nov 14 15:13:47 CST 2022 time_line jobs+10230251+startPipeline_pairwise49of136 483.63548 3705.81 109.45 2:39.52 2391% 2366044 Mon Nov 14 15:03:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise50of136 505.30976 3833.82 107.92 2:44.34 2398% 2368292 Mon Nov 14 15:04:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise51of136 525.03696 3660.23 103.37 2:43.62 2300% 2365100 Mon Nov 14 15:04:30 CST 2022 time_line jobs+10230251+startPipeline_pairwise52of136 534.47257 3675.65 106.36 2:45.76 2281% 2362836 Mon Nov 14 15:04:40 CST 2022 time_line jobs+10230251+startPipeline_pairwise53of136 556.91341 3892.88 139.76 3:05.17 2177% 2362104 Mon Nov 14 14:51:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise54of136 592.75688 4152.43 131.21 3:26.79 2071% 2362832 Mon Nov 14 15:05:38 CST 2022 time_line jobs+10230251+startPipeline_pairwise55of136 566.81003 3872.64 139.16 2:59.85 2230% 2369668 Mon Nov 14 14:52:08 CST 2022 time_line jobs+10230251+startPipeline_pairwise56of136 609.01277 4191.94 128.94 3:38.70 1975% 2366888 Mon Nov 14 15:05:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise57of136 636.49966 4176.52 133.33 3:27.02 2081% 2360828 Mon Nov 14 15:06:22 CST 2022 time_line jobs+10230251+startPipeline_pairwise58of136 651.29899 4132.00 132.60 3:30.52 2025% 2364476 Mon Nov 14 15:06:37 CST 2022 time_line jobs+10230251+startPipeline_pairwise59of136 614.18515 3185.73 82.53 2:42.84 2006% 2032640 Mon Nov 14 15:05:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise60of136 699.49473 4284.91 135.40 3:41.61 1994% 2366792 Mon Nov 14 15:07:25 CST 2022 time_line jobs+10230251+startPipeline_pairwise61of136 644.25147 3682.88 106.03 2:38.68 2387% 2364136 Mon Nov 14 15:06:30 CST 2022 time_line jobs+10230251+startPipeline_pairwise62of136 729.44618 4446.52 131.32 3:49.80 1992% 2370200 Mon Nov 14 15:11:19 CST 2022 time_line jobs+10230251+startPipeline_pairwise63of136 727.96569 4382.19 124.00 3:47.45 1981% 2368452 Mon Nov 14 15:11:17 CST 2022 time_line jobs+10230251+startPipeline_pairwise64of136 740.25529 4378.70 130.49 3:51.46 1948% 2364304 Mon Nov 14 15:08:04 CST 2022 time_line jobs+10230251+startPipeline_pairwise65of136 740.91009 4472.79 137.06 3:55.25 1959% 2363908 Mon Nov 14 15:08:06 CST 2022 time_line jobs+10230251+startPipeline_pairwise66of136 740.18831 4396.60 132.42 3:51.39 1957% 2365440 Mon Nov 14 15:08:04 CST 2022 time_line jobs+10230251+startPipeline_pairwise67of136 740.85297 4441.33 133.59 3:55.18 1945% 2367048 Mon Nov 14 15:08:06 CST 2022 time_line jobs+10230251+startPipeline_pairwise68of136 668.20371 3663.06 113.70 2:40.36 2355% 2373656 Mon Nov 14 15:06:54 CST 2022 time_line jobs+10230251+startPipeline_pairwise69of136 735.80548 4325.83 126.80 3:44.97 1979% 2364224 Mon Nov 14 15:17:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise70of136 735.77991 4304.71 127.60 3:43.52 1982% 2364360 Mon Nov 14 15:17:36 CST 2022 time_line jobs+10230251+startPipeline_pairwise71of136 681.75066 3234.91 90.24 2:39.58 2083% 2029896 Mon Nov 14 14:47:40 CST 2022 time_line jobs+10230251+startPipeline_pairwise72of136 742.73806 4327.16 130.71 3:38.08 2044% 2367400 Mon Nov 14 14:48:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise73of136 692.63075 3727.54 108.06 2:46.06 2309% 2369608 Mon Nov 14 15:07:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise74of136 771.38170 4734.55 137.05 3:56.86 2056% 2366752 Mon Nov 14 15:08:37 CST 2022 time_line jobs+10230251+startPipeline_pairwise75of136 702.89754 3663.52 107.82 2:46.19 2269% 2361232 Mon Nov 14 15:07:29 CST 2022 time_line jobs+10230251+startPipeline_pairwise76of136 775.90045 4819.92 124.26 3:58.63 2071% 2362544 Mon Nov 14 15:08:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise77of136 726.79082 3842.93 139.44 2:48.65 2361% 2361656 Mon Nov 14 14:54:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise78of136 755.95152 3884.72 137.12 3:07.20 2148% 2371416 Mon Nov 14 14:55:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise79of136 806.41843 4231.68 134.17 3:31.94 2059% 2369156 Mon Nov 14 15:09:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise80of136 858.25720 4892.06 133.26 4:06.80 2036% 2362780 Mon Nov 14 15:10:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise81of136 860.52220 5050.19 122.72 4:03.51 2124% 2361256 Mon Nov 14 15:10:06 CST 2022 time_line jobs+10230251+startPipeline_pairwise82of136 794.73537 3124.55 95.67 2:36.26 2060% 2032984 Mon Nov 14 15:09:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise83of136 809.38188 3765.46 107.74 2:43.16 2373% 2369592 Mon Nov 14 15:09:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise84of136 867.64453 4226.20 126.91 3:34.27 2031% 2369736 Mon Nov 14 15:10:14 CST 2022 time_line jobs+10230251+startPipeline_pairwise85of136 827.76494 3667.66 109.67 2:36.13 2419% 2363412 Mon Nov 14 15:09:33 CST 2022 time_line jobs+10230251+startPipeline_pairwise86of136 899.26560 4338.79 130.45 3:36.55 2063% 2363076 Mon Nov 14 14:51:19 CST 2022 time_line jobs+10230251+startPipeline_pairwise87of136 856.28016 3722.16 109.00 2:40.73 2383% 2362892 Mon Nov 14 15:10:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise88of136 913.82849 4326.00 125.94 3:31.64 2103% 2368156 Mon Nov 14 15:11:00 CST 2022 time_line jobs+10230251+startPipeline_pairwise89of136 869.07742 3722.18 116.00 2:44.49 2333% 2368332 Mon Nov 14 15:10:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise90of136 939.66778 4275.78 131.49 3:30.85 2090% 2360700 Mon Nov 14 15:14:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise91of136 905.30511 3806.76 141.38 2:57.08 2229% 2362024 Mon Nov 14 14:57:49 CST 2022 time_line jobs+10230251+startPipeline_pairwise92of136 904.76146 3331.45 87.52 2:51.74 1990% 2037116 Mon Nov 14 15:14:15 CST 2022 time_line jobs+10230251+startPipeline_pairwise93of136 979.71018 4506.02 130.61 3:59.54 1935% 2368256 Mon Nov 14 15:21:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise94of136 979.67587 4482.44 129.59 3:59.43 1926% 2362340 Mon Nov 14 15:21:42 CST 2022 time_line jobs+10230251+startPipeline_pairwise95of136 974.17916 4399.52 137.83 3:49.05 1980% 2364712 Mon Nov 14 15:11:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise96of136 975.45678 4381.19 141.43 3:49.03 1974% 2361980 Mon Nov 14 15:11:59 CST 2022 time_line jobs+10230251+startPipeline_pairwise97of136 977.13239 4466.35 134.76 3:52.33 1980% 2368752 Mon Nov 14 15:12:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise98of136 978.76959 4445.45 132.09 3:52.33 1970% 2369912 Mon Nov 14 15:12:03 CST 2022 time_line jobs+10230251+startPipeline_pairwise99of136 960.95235 4502.29 135.71 3:37.42 2133% 2365392 Mon Nov 14 14:52:22 CST 2022 time_line jobs+10230251+startPipeline_pairwise100of136 934.08853 3816.89 134.46 2:56.07 2244% 2364872 Mon Nov 14 14:58:17 CST 2022 time_line jobs+10230251+startPipeline_pairwise101of136 934.54549 3309.76 100.46 2:41.57 2110% 2031548 Mon Nov 14 15:11:21 CST 2022 time_line jobs+10230251+startPipeline_pairwise102of136 995.52943 4377.51 131.82 3:38.05 2067% 2365180 Mon Nov 14 15:12:22 CST 2022 time_line jobs+10230251+startPipeline_pairwise103of136 1018.51774 4264.77 131.93 3:39.86 1999% 2368084 Mon Nov 14 15:12:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise104of136 1013.44373 4283.14 124.56 3:25.41 2145% 2361212 Mon Nov 14 15:12:41 CST 2022 time_line jobs+10230251+startPipeline_pairwise105of136 980.45531 3730.64 107.13 2:49.89 2258% 2368232 Mon Nov 14 15:12:07 CST 2022 time_line jobs+10230251+startPipeline_pairwise106of136 984.40317 3567.67 112.42 2:35.24 2370% 2365136 Mon Nov 14 15:12:12 CST 2022 time_line jobs+10230251+startPipeline_pairwise107of136 1016.02923 3618.29 108.44 2:39.38 2338% 2360652 Mon Nov 14 15:12:44 CST 2022 time_line jobs+10230251+startPipeline_pairwise108of136 1074.46215 4694.13 128.53 3:34.67 2246% 2361076 Mon Nov 14 15:13:41 CST 2022 time_line jobs+10230251+startPipeline_pairwise109of136 1055.95699 3591.03 86.62 3:13.68 1898% 2026868 Mon Nov 14 15:13:23 CST 2022 time_line jobs+10230251+startPipeline_pairwise110of136 1109.61906 4290.22 159.66 3:59.65 1856% 2364312 Mon Nov 14 15:14:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise111of136 1047.87328 3490.99 118.48 2:57.12 2037% 2361836 Mon Nov 14 15:13:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise112of136 1152.17499 4388.40 150.24 4:10.57 1811% 2366488 Mon Nov 14 14:55:32 CST 2022 time_line jobs+10230251+startPipeline_pairwise113of136 1138.87357 4088.69 144.00 3:52.97 1816% 2370860 Mon Nov 14 15:18:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise114of136 1110.95348 3657.02 152.64 3:24.09 1866% 2361860 Mon Nov 14 15:01:15 CST 2022 time_line jobs+10230251+startPipeline_pairwise115of136 1130.86394 4057.08 149.72 3:35.58 1951% 2360880 Mon Nov 14 15:14:38 CST 2022 time_line jobs+10230251+startPipeline_pairwise116of136 1093.70953 3160.77 97.88 2:38.00 2062% 2029752 Mon Nov 14 15:14:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise117of136 1106.73574 3829.59 133.89 2:51.16 2315% 2362916 Mon Nov 14 15:01:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise118of136 1146.88518 4297.85 126.75 3:25.92 2148% 2367412 Mon Nov 14 15:18:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise119of136 1175.02650 4711.71 128.62 3:31.57 2287% 2369188 Mon Nov 14 14:55:55 CST 2022 time_line jobs+10230251+startPipeline_pairwise120of136 1208.17255 4316.22 141.47 3:49.77 1940% 2359668 Mon Nov 14 15:15:55 CST 2022 time_line jobs+10230251+startPipeline_pairwise121of136 1208.14587 4318.09 134.45 3:49.72 1938% 2362912 Mon Nov 14 15:15:55 CST 2022 time_line jobs+10230251+startPipeline_pairwise122of136 1144.48589 3234.10 91.49 2:44.65 2019% 2028960 Mon Nov 14 15:14:53 CST 2022 time_line jobs+10230251+startPipeline_pairwise123of136 1176.81796 4283.12 126.95 3:15.86 2251% 2368516 Mon Nov 14 15:15:24 CST 2022 time_line jobs+10230251+startPipeline_pairwise124of136 1211.05906 4402.38 128.84 3:49.03 1978% 2368932 Mon Nov 14 15:25:35 CST 2022 time_line jobs+10230251+startPipeline_pairwise125of136 1212.07932 4376.63 127.22 3:49.05 1966% 2361844 Mon Nov 14 15:25:35 CST 2022 time_line jobs+10230251+startPipeline_pairwise126of136 1141.34342 3604.90 110.47 2:40.52 2314% 2361872 Mon Nov 14 15:14:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise127of136 1103.57997 2780.61 66.23 1:57.44 2424% 2035264 Mon Nov 14 15:14:11 CST 2022 time_line jobs+10230251+startPipeline_pairwise128of136 1213.65972 4327.54 133.44 3:36.14 2063% 2367908 Mon Nov 14 15:16:01 CST 2022 time_line jobs+10230251+startPipeline_pairwise129of136 1168.17637 4131.39 125.62 2:31.79 2804% 2362484 Mon Nov 14 15:15:16 CST 2022 time_line jobs+10230251+startPipeline_pairwise130of136 1170.29866 3574.20 104.93 2:32.14 2418% 2363572 Mon Nov 14 15:15:18 CST 2022 time_line jobs+10230251+startPipeline_pairwise131of136 1158.67148 3184.04 85.45 2:19.22 2348% 2035072 Mon Nov 14 15:15:07 CST 2022 time_line jobs+10230251+startPipeline_pairwise132of136 1207.51393 3715.77 92.01 2:37.16 2422% 2363428 Mon Nov 14 15:15:55 CST 2022 time_line jobs+10230251+startPipeline_pairwise133of136 1262.69012 4442.85 129.75 3:24.27 2238% 2363420 Mon Nov 14 15:16:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise134of136 1249.59089 3288.48 81.98 2:52.59 1952% 2027268 Mon Nov 14 15:16:38 CST 2022 time_line jobs+10230251+startPipeline_pairwise135of136 1262.61674 4091.96 116.30 2:47.03 2519% 2362360 Mon Nov 14 15:16:50 CST 2022 time_line jobs+10230251+startPipeline_pairwise136of136 1227.40819 2669.34 65.10 2:02.47 2232% 2027524 Mon Nov 14 15:16:16 CST 2022 2022-11-14 21:03:49,051:INFO:Generating jobs for alignmolvref 2022-11-14 21:03:49,052:INFO:alignmolvref ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/merge/exp_refineFinal1 -i /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx -f -stdout -stderr -maxthreads 112 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -output-veto-filter '(intervals.txt|\.map)$' -mapped-unsplit 0 -T 1e-11 -A 8 -L 80 -S -1000 -nosplit 2 -biaswt 0.0 -biaswtEnd 0.0 -biaswtOutlier 0.0 -res 3.1 -resSD 0.75 -extend 1 -BestRef 1 -BestRefPV 1 -maptype 0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -insertThreads 4 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -outlier 0.0001 -endoutlier 0.0001 -sf 0.25 -sd 0.11 -minsites 9 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 2 -hash -hashdelta 14 10 24 -mres 0.9 -hashGC 300 -hashT2 1 -insertThreads 4 -XMAPmapWT 1 -nostat -rres 0.9 -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 21:03:49,053:INFO:************************* Executing stage 10: Assembly ************************* 2022-11-14 21:03:49,054:INFO:Generating jobs for Assembly 2022-11-14 21:03:49,055:INFO:Assembly ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/Assembler${BINARY_SUFFIX:=} -if /home/bionano/access/local/jobs/10230251/output/all.list -af /home/bionano/access/local/jobs/10230251/output/align/alignOut -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -usecolor 1 -S 0. -contigs_format 1 -MaxRelCoverage 100 200 30 -BulgeCoverage 20 -MaxCoverage 10 -MinCov 10 -MinAvCov 5 -MinMaps 5 -MinContigLen 0.0 -EndTrim 0.9 -refine 0 -mres 0.9 -outlier 0.001 -outlierMax 40. -endoutlier 0 -PVchim 0.001 3 -FastBulge 1000 -FastPaths 1 -draftsize 1 -alignscore -FragilePreserve 0 -SideBranch 1 -SideChain -MinCov 8 -MaxCoverage 8 -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -AlignmentFilter 100 5.0 1.0 0.6 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -T 1e-11 -minlen 180.0 -maxContigSiteDensity 0 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/exp_unrefined -maxthreads 112 -stdout -stderr 2022-11-14 21:03:49,055:INFO: Starting Multi-Threaded Process: alignmolvref 2022-11-14 21:03:49,055:INFO:conda_env=None,conda_source=None 2022-11-14 21:03:49,056:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:03:49,056:INFO: Starting Multi-Threaded Process: Assembly 2022-11-14 21:03:49,057:INFO:conda_env=None,conda_source=None 2022-11-14 21:03:49,057:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:03:49,063:INFO: START 1: alignmolvref, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:03:49,076:INFO: START 1: Assembly, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:04:17,811:WARNING:Failed to get status for Assembly (jobID=569603): will retry in 5 seconds. The message was: code 2: failed receiving gdi request response for mid=65535 (can't send response for this message id - protocol error). 2022-11-14 21:10:23,828:WARNING:Failed to get status for alignmolvref (jobID=569602): will retry in 5 seconds. The message was: code 2: failed receiving gdi request response for mid=65535 (can't send response for this message id - protocol error). 2022-11-14 21:14:50,987:INFO: STOP 1: Assembly, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 11.03m RunTime= 0h 11.02m CPUload=1708% saphyr1a 2022-11-14 21:14:50,989:INFO: Finished Multi-Threaded Process: Assembly 2022-11-14 21:14:51,086:INFO: Assembly completed in: 661.9s Result Found Completed 1 jobs on 56 threads Clock time: 0h 11.03m CPU time : 0h 11.03m Begin machine parsable segment for: Assembly time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Assembly 661.91043 9360.37 1928.74 11:00.62 1708% 17406244 Mon Nov 14 15:14:50 CST 2022 2022-11-14 21:14:51,086:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 21:14:51,087:INFO:Loaded 1885 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 21:14:51,104:INFO:Found 1882 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 21:14:51,104:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:14:51,106:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:14:51,107:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_unrefined 2022-11-14 21:14:51,107:INFO:conda_env=None,conda_source=None 2022-11-14 21:14:51,107:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 21:14:51,123:INFO: START 1: mrg_exp_unrefin, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:14:57,141:INFO: STOP 1: mrg_exp_unrefin, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.10m RunTime= 0h 0.06m CPUload=136% saphyr1c 2022-11-14 21:14:57,141:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_unrefined 2022-11-14 21:14:57,142:INFO: mrg_exp_unrefined_0 completed in: 6.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.10m CPU time : 0h 0.10m Begin machine parsable segment for: Cmap_Merge_exp_unrefined time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_unrefined_0 6.01755 1.77 2.85 0:03.39 136% 155780 Mon Nov 14 15:31:23 CST 2022 2022-11-14 21:14:58,654:INFO:Generating jobs for CharacterizeD_Assembly 2022-11-14 21:14:58,654:INFO:CharacterizeD_Assembly ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/EXP_UNREFINED.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/alignref/EXP_UNREFINED -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 21:14:58,656:INFO:Running jobs for CharacterizeD_Assembly 2022-11-14 21:14:58,657:INFO: Starting Multi-Threaded Process: CharacterizeD_Assembly 2022-11-14 21:14:58,657:INFO:conda_env=None,conda_source=None 2022-11-14 21:14:58,657:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:14:58,676:INFO: START 1: CharD_Assembly, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:14:58,690:INFO:Deleting binary pairwise alignment files due to clean-up level 1 2022-11-14 21:15:02,777:INFO:************************* Executing stage 11: refineA ************************* 2022-11-14 21:15:02,778:INFO:Starting stage refineA 2022-11-14 21:15:02,778:INFO:refineA maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 21:15:02,778:INFO:Generating Jobs for refineA, conf.extensionCount= 0 2022-11-14 21:15:02,778:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 21:15:02,779:INFO:Loaded 1889 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 21:15:02,798:INFO:Found 1882 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined 2022-11-14 21:15:02,799:INFO:Calling contigComputeWeights with ExtensionNoES= False 2022-11-14 21:15:02,885:INFO:MaxWeight = 960.00, witr= 0, threads= 56 (totThreads=56, minthreads=14, maxthreads=56), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA/exp_refineA_group_weights 2022-11-14 21:15:03,266:INFO:NumHostJobs= 4, TotalJobs= 55, HostWeight= 1344.2560000000003, TargetWeight= 1143.6394820153107, TotalWeight= 14295.493525191383 2022-11-14 21:15:03,267:INFO:Found 55 groups for refineA 2022-11-14 21:15:03,270:INFO:refineA ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/Assembler${BINARY_SUFFIX:=} -if /home/bionano/access/local/jobs/10230251/output/all.list -contigs /home/bionano/access/local/jobs/10230251/output/contigs/exp_unrefined/exp_unrefined.contigs 1 2 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA/exp_refineA -maxthreads 14 -f -stdout -stderr -T 1e-11 -minlen 180.0 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -usecolor 1 -extend 1 -refine 2 -EndTrim 1.9 -LRbias 1e2 -deltaX 4 -deltaY 6 -MaxSE 0.5 -outlier 1e-2 -outlierMax 40. -endoutlier 0.001 -RTHETA_FIX 0 -maptype 0 -contigs_format 1 -PVres 2 -rres 0.9 -mres 0.9 -MinSplitLen 50.0 -alignscore -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -RefineRange 6 6 -RefineErr 1e-6 0 0 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 21:15:03,271:INFO: Starting Multi-Threaded Process: refineA 2022-11-14 21:15:03,271:INFO:conda_env=None,conda_source=None 2022-11-14 21:15:03,271:INFO: Running 55 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:15:03,275:INFO: START 1: refineA 1, 56 Thr, 1 R, 55 T, 0 F, 54 Q 2022-11-14 21:15:03,299:INFO: START 2: refineA 2, 56 Thr, 2 R, 55 T, 0 F, 53 Q 2022-11-14 21:15:03,323:INFO: START 3: refineA 3, 56 Thr, 3 R, 55 T, 0 F, 52 Q 2022-11-14 21:15:03,347:INFO: START 4: refineA 4, 56 Thr, 4 R, 55 T, 0 F, 51 Q 2022-11-14 21:15:03,371:INFO: START 5: refineA 5, 14 Thr, 5 R, 55 T, 0 F, 50 Q 2022-11-14 21:15:03,409:INFO: START 6: refineA 6, 14 Thr, 6 R, 55 T, 0 F, 49 Q 2022-11-14 21:15:03,442:INFO: START 7: refineA 7, 14 Thr, 7 R, 55 T, 0 F, 48 Q 2022-11-14 21:15:03,467:INFO: START 8: refineA 8, 14 Thr, 8 R, 55 T, 0 F, 47 Q 2022-11-14 21:15:03,492:INFO: START 9: refineA 9, 14 Thr, 9 R, 55 T, 0 F, 46 Q 2022-11-14 21:15:03,516:INFO: START 10: refineA 10, 14 Thr, 10 R, 55 T, 0 F, 45 Q 2022-11-14 21:15:03,541:INFO: START 11: refineA 11, 14 Thr, 11 R, 55 T, 0 F, 44 Q 2022-11-14 21:15:03,587:INFO: START 12: refineA 12, 14 Thr, 12 R, 55 T, 0 F, 43 Q 2022-11-14 21:15:03,612:INFO: START 13: refineA 13, 14 Thr, 13 R, 55 T, 0 F, 42 Q 2022-11-14 21:15:03,636:INFO: START 14: refineA 14, 14 Thr, 14 R, 55 T, 0 F, 41 Q 2022-11-14 21:15:03,661:INFO: START 15: refineA 15, 14 Thr, 15 R, 55 T, 0 F, 40 Q 2022-11-14 21:15:03,685:INFO: START 16: refineA 16, 14 Thr, 16 R, 55 T, 0 F, 39 Q 2022-11-14 21:15:03,709:INFO: START 17: refineA 17, 14 Thr, 17 R, 55 T, 0 F, 38 Q 2022-11-14 21:15:03,734:INFO: START 18: refineA 18, 14 Thr, 18 R, 55 T, 0 F, 37 Q 2022-11-14 21:15:03,758:INFO: START 19: refineA 19, 14 Thr, 19 R, 55 T, 0 F, 36 Q 2022-11-14 21:15:03,783:INFO: START 20: refineA 20, 14 Thr, 20 R, 55 T, 0 F, 35 Q 2022-11-14 21:15:03,807:INFO: START 21: refineA 21, 14 Thr, 21 R, 55 T, 0 F, 34 Q 2022-11-14 21:15:03,833:INFO: START 22: refineA 22, 14 Thr, 22 R, 55 T, 0 F, 33 Q 2022-11-14 21:15:03,857:INFO: START 23: refineA 23, 14 Thr, 23 R, 55 T, 0 F, 32 Q 2022-11-14 21:15:03,881:INFO: START 24: refineA 24, 14 Thr, 24 R, 55 T, 0 F, 31 Q 2022-11-14 21:15:03,905:INFO: START 25: refineA 25, 14 Thr, 25 R, 55 T, 0 F, 30 Q 2022-11-14 21:15:03,929:INFO: START 26: refineA 26, 14 Thr, 26 R, 55 T, 0 F, 29 Q 2022-11-14 21:15:03,954:INFO: START 27: refineA 27, 14 Thr, 27 R, 55 T, 0 F, 28 Q 2022-11-14 21:15:03,978:INFO: START 28: refineA 28, 14 Thr, 28 R, 55 T, 0 F, 27 Q 2022-11-14 21:15:04,033:INFO: START 29: refineA 29, 14 Thr, 29 R, 55 T, 0 F, 26 Q 2022-11-14 21:15:04,058:INFO: START 30: refineA 30, 14 Thr, 30 R, 55 T, 0 F, 25 Q 2022-11-14 21:15:04,083:INFO: START 31: refineA 31, 14 Thr, 31 R, 55 T, 0 F, 24 Q 2022-11-14 21:15:04,108:INFO: START 32: refineA 32, 14 Thr, 32 R, 55 T, 0 F, 23 Q 2022-11-14 21:15:04,163:INFO: START 33: refineA 33, 14 Thr, 33 R, 55 T, 0 F, 22 Q 2022-11-14 21:15:04,188:INFO: START 34: refineA 34, 14 Thr, 34 R, 55 T, 0 F, 21 Q 2022-11-14 21:15:04,212:INFO: START 35: refineA 35, 14 Thr, 35 R, 55 T, 0 F, 20 Q 2022-11-14 21:15:04,237:INFO: START 36: refineA 36, 14 Thr, 36 R, 55 T, 0 F, 19 Q 2022-11-14 21:15:04,261:INFO: START 37: refineA 37, 14 Thr, 37 R, 55 T, 0 F, 18 Q 2022-11-14 21:15:04,285:INFO: START 38: refineA 38, 14 Thr, 38 R, 55 T, 0 F, 17 Q 2022-11-14 21:15:04,310:INFO: START 39: refineA 39, 14 Thr, 39 R, 55 T, 0 F, 16 Q 2022-11-14 21:15:04,334:INFO: START 40: refineA 40, 14 Thr, 40 R, 55 T, 0 F, 15 Q 2022-11-14 21:15:04,358:INFO: START 41: refineA 41, 14 Thr, 41 R, 55 T, 0 F, 14 Q 2022-11-14 21:15:04,383:INFO: START 42: refineA 42, 14 Thr, 42 R, 55 T, 0 F, 13 Q 2022-11-14 21:15:04,426:INFO: START 43: refineA 43, 14 Thr, 43 R, 55 T, 0 F, 12 Q 2022-11-14 21:15:04,454:INFO: START 44: refineA 44, 14 Thr, 44 R, 55 T, 0 F, 11 Q 2022-11-14 21:15:04,479:INFO: START 45: refineA 45, 14 Thr, 45 R, 55 T, 0 F, 10 Q 2022-11-14 21:15:04,504:INFO: START 46: refineA 46, 14 Thr, 46 R, 55 T, 0 F, 9 Q 2022-11-14 21:15:04,542:INFO: START 47: refineA 47, 14 Thr, 47 R, 55 T, 0 F, 8 Q 2022-11-14 21:15:04,567:INFO: START 48: refineA 48, 14 Thr, 48 R, 55 T, 0 F, 7 Q 2022-11-14 21:15:04,592:INFO: START 49: refineA 49, 14 Thr, 49 R, 55 T, 0 F, 6 Q 2022-11-14 21:15:04,616:INFO: START 50: refineA 50, 14 Thr, 50 R, 55 T, 0 F, 5 Q 2022-11-14 21:15:04,720:INFO: START 51: refineA 51, 14 Thr, 51 R, 55 T, 0 F, 4 Q 2022-11-14 21:15:04,745:INFO: START 52: refineA 52, 14 Thr, 52 R, 55 T, 0 F, 3 Q 2022-11-14 21:15:04,770:INFO: START 53: refineA 53, 14 Thr, 53 R, 55 T, 0 F, 2 Q 2022-11-14 21:15:04,795:INFO: START 54: refineA 54, 14 Thr, 54 R, 55 T, 0 F, 1 Q 2022-11-14 21:15:04,820:INFO: START 55: refineA 55, 14 Thr, 55 R, 55 T, 0 F, 0 Q 2022-11-14 21:15:36,140:INFO: STOP 50: refineA 50, 14 Thr, 54 R, 55 T, 1 F, 0 Q TotalTime= 0h 0.53m RunTime= 0h 0.43m CPUload=224% bionano2d 2022-11-14 21:15:39,315:INFO: STOP 41: refineA 41, 14 Thr, 53 R, 55 T, 2 F, 0 Q TotalTime= 0h 0.58m RunTime= 0h 0.50m CPUload=241% bionano2d 2022-11-14 21:15:43,114:INFO: STOP 32: refineA 32, 14 Thr, 52 R, 55 T, 3 F, 0 Q TotalTime= 0h 0.65m RunTime= 0h 0.56m CPUload=270% bionano2d 2022-11-14 21:15:46,965:INFO: STOP 23: refineA 23, 14 Thr, 51 R, 55 T, 4 F, 0 Q TotalTime= 0h 0.72m RunTime= 0h 0.68m CPUload=345% bionano2d 2022-11-14 21:15:56,298:INFO: STOP 55: refineA 55, 14 Thr, 50 R, 55 T, 5 F, 0 Q TotalTime= 0h 0.86m RunTime= 0h 0.47m CPUload=65% bionano1d 2022-11-14 21:15:58,059:INFO: STOP 48: refineA 48, 14 Thr, 49 R, 55 T, 6 F, 0 Q TotalTime= 0h 0.89m RunTime= 0h 0.78m CPUload=157% bionano1b 2022-11-14 21:16:03,194:WARNING:Failed to get status for refineA 49 (jobID=569654): will retry in 5 seconds. The message was: code 2: failed receiving gdi request response for mid=65535 (can't send response for this message id - protocol error). 2022-11-14 21:16:08,294:INFO: STOP 39: refineA 39, 14 Thr, 48 R, 55 T, 7 F, 0 Q TotalTime= 0h 1.07m RunTime= 0h 0.86m CPUload=173% bionano1b 2022-11-14 21:16:08,383:INFO: STOP 30: refineA 30, 14 Thr, 47 R, 55 T, 8 F, 0 Q TotalTime= 0h 1.07m RunTime= 0h 0.86m CPUload=191% bionano1b 2022-11-14 21:16:09,217:INFO: STOP 54: refineA 54, 14 Thr, 46 R, 55 T, 9 F, 0 Q TotalTime= 0h 1.07m RunTime= 0h 0.69m CPUload=93% saphyr1d 2022-11-14 21:16:18,618:INFO: STOP 45: refineA 45, 14 Thr, 45 R, 55 T, 10 F, 0 Q TotalTime= 0h 1.24m RunTime= 0h 0.86m CPUload=157% saphyr1d 2022-11-14 21:16:18,654:INFO: STOP 40: refineA 40, 14 Thr, 44 R, 55 T, 11 F, 0 Q TotalTime= 0h 1.24m RunTime= 0h 0.89m CPUload=163% bionano2c 2022-11-14 21:16:19,074:INFO: STOP 49: refineA 49, 14 Thr, 43 R, 55 T, 12 F, 0 Q TotalTime= 0h 1.24m RunTime= 0h 0.85m CPUload=146% bionano2c 2022-11-14 21:16:20,079:INFO: STOP 51: refineA 51, 14 Thr, 42 R, 55 T, 13 F, 0 Q TotalTime= 0h 1.26m RunTime= 0h 0.83m CPUload=135% saphyr1b 2022-11-14 21:16:21,286:INFO: STOP 21: refineA 21, 14 Thr, 41 R, 55 T, 14 F, 0 Q TotalTime= 0h 1.29m RunTime= 0h 1.26m CPUload=411% bionano1b 2022-11-14 21:16:22,035:INFO: STOP 46: refineA 46, 14 Thr, 40 R, 55 T, 15 F, 0 Q TotalTime= 0h 1.29m RunTime= 0h 0.92m CPUload=144% bionano1d 2022-11-14 21:16:22,526:INFO: STOP 36: refineA 36, 14 Thr, 39 R, 55 T, 16 F, 0 Q TotalTime= 0h 1.30m RunTime= 0h 0.94m CPUload=170% saphyr1d 2022-11-14 21:16:23,907:INFO: STOP 42: refineA 42, 14 Thr, 38 R, 55 T, 17 F, 0 Q TotalTime= 0h 1.33m RunTime= 0h 0.91m CPUload=153% saphyr1b 2022-11-14 21:16:24,307:INFO: STOP 47: refineA 47, 14 Thr, 37 R, 55 T, 18 F, 0 Q TotalTime= 0h 1.33m RunTime= 0h 0.92m CPUload=135% bionano1c 2022-11-14 21:16:24,343:INFO: STOP 37: refineA 37, 14 Thr, 36 R, 55 T, 19 F, 0 Q TotalTime= 0h 1.33m RunTime= 0h 0.98m CPUload=156% bionano1d 2022-11-14 21:16:26,077:INFO: STOP 31: refineA 31, 14 Thr, 35 R, 55 T, 20 F, 0 Q TotalTime= 0h 1.37m RunTime= 0h 1.07m CPUload=172% bionano2c 2022-11-14 21:16:27,644:INFO: STOP 38: refineA 38, 14 Thr, 34 R, 55 T, 21 F, 0 Q TotalTime= 0h 1.39m RunTime= 0h 1.00m CPUload=145% bionano1c 2022-11-14 21:16:28,040:INFO: STOP 33: refineA 33, 14 Thr, 33 R, 55 T, 22 F, 0 Q TotalTime= 0h 1.40m RunTime= 0h 1.03m CPUload=164% saphyr1b 2022-11-14 21:16:28,435:INFO: STOP 27: refineA 27, 14 Thr, 32 R, 55 T, 23 F, 0 Q TotalTime= 0h 1.41m RunTime= 0h 1.37m CPUload=156% saphyr1d 2022-11-14 21:16:29,165:INFO: STOP 28: refineA 28, 14 Thr, 31 R, 55 T, 24 F, 0 Q TotalTime= 0h 1.42m RunTime= 0h 1.36m CPUload=142% bionano1d 2022-11-14 21:16:32,834:INFO: STOP 53: refineA 53, 14 Thr, 30 R, 55 T, 25 F, 0 Q TotalTime= 0h 1.47m RunTime= 0h 1.07m CPUload=78% bionano2b 2022-11-14 21:16:34,227:INFO: STOP 52: refineA 52, 14 Thr, 29 R, 55 T, 26 F, 0 Q TotalTime= 0h 1.49m RunTime= 0h 1.11m CPUload=86% saphyr1c 2022-11-14 21:16:34,594:INFO: STOP 44: refineA 44, 14 Thr, 28 R, 55 T, 27 F, 0 Q TotalTime= 0h 1.50m RunTime= 0h 1.11m CPUload=115% bionano2b 2022-11-14 21:16:35,591:INFO: STOP 29: refineA 29, 14 Thr, 27 R, 55 T, 28 F, 0 Q TotalTime= 0h 1.53m RunTime= 0h 1.17m CPUload=165% bionano1c 2022-11-14 21:16:36,857:INFO: STOP 35: refineA 35, 14 Thr, 26 R, 55 T, 29 F, 0 Q TotalTime= 0h 1.54m RunTime= 0h 1.15m CPUload=129% bionano2b 2022-11-14 21:16:38,093:INFO: STOP 24: refineA 24, 14 Thr, 25 R, 55 T, 30 F, 0 Q TotalTime= 0h 1.57m RunTime= 0h 1.43m CPUload=167% saphyr1b 2022-11-14 21:16:40,318:INFO: STOP 43: refineA 43, 14 Thr, 24 R, 55 T, 31 F, 0 Q TotalTime= 0h 1.60m RunTime= 0h 1.23m CPUload=112% saphyr1c 2022-11-14 21:16:44,387:INFO: STOP 34: refineA 34, 14 Thr, 23 R, 55 T, 32 F, 0 Q TotalTime= 0h 1.67m RunTime= 0h 1.32m CPUload=122% saphyr1c 2022-11-14 21:16:47,798:INFO: STOP 26: refineA 26, 14 Thr, 22 R, 55 T, 33 F, 0 Q TotalTime= 0h 1.73m RunTime= 0h 1.62m CPUload=129% bionano2b 2022-11-14 21:16:50,839:INFO: STOP 22: refineA 22, 14 Thr, 21 R, 55 T, 34 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.65m CPUload=231% bionano2c 2022-11-14 21:16:53,577:INFO: STOP 25: refineA 25, 14 Thr, 20 R, 55 T, 35 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.76m CPUload=122% saphyr1c 2022-11-14 21:17:35,698:INFO: STOP 20: refineA 20, 14 Thr, 19 R, 55 T, 36 F, 0 Q TotalTime= 0h 2.53m RunTime= 0h 2.38m CPUload=388% bionano1c 2022-11-14 21:17:49,297:INFO: STOP 19: refineA 19, 14 Thr, 18 R, 55 T, 37 F, 0 Q TotalTime= 0h 2.76m RunTime= 0h 2.71m CPUload=563% bionano1d 2022-11-14 21:17:59,678:INFO: STOP 18: refineA 18, 14 Thr, 17 R, 55 T, 38 F, 0 Q TotalTime= 0h 2.93m RunTime= 0h 2.88m CPUload=679% saphyr1d 2022-11-14 21:18:22,804:INFO: STOP 4: refineA 4, 56 Thr, 16 R, 55 T, 39 F, 0 Q TotalTime= 0h 3.32m RunTime= 0h 3.31m CPUload=2282% bionano2a 2022-11-14 21:18:46,179:INFO: STOP 17: refineA 17, 14 Thr, 15 R, 55 T, 40 F, 0 Q TotalTime= 0h 3.71m RunTime= 0h 3.65m CPUload=812% bionano2b 2022-11-14 21:19:15,861:INFO: STOP 16: refineA 16, 14 Thr, 14 R, 55 T, 41 F, 0 Q TotalTime= 0h 4.20m RunTime= 0h 4.15m CPUload=1008% saphyr1c 2022-11-14 21:19:37,723:INFO: STOP 1: alignmolvref, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 15.81m RunTime= 0h 4.77m CPUload=3785% saphyr1a 2022-11-14 21:19:37,724:INFO: Finished Multi-Threaded Process: alignmolvref 2022-11-14 21:19:46,048:INFO: STOP 1: CharD_Assembly, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 4.79m RunTime= 0h 0.13m CPUload=1610% saphyr1a 2022-11-14 21:19:46,048:INFO: Finished Multi-Threaded Process: CharacterizeD_Assembly 2022-11-14 21:19:46,049:INFO:Characterize Assembly completed : will check Results 2022-11-14 21:19:46,050:INFO: CharD_Assembly completed in: 287.4s Result Found Completed 1 jobs on 56 threads Clock time: 0h 4.79m CPU time : 0h 4.79m Begin machine parsable segment for: CharacterizeD_Assembly time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Assembly 287.37127 109.30 12.94 0:07.59 1610% 1247888 Mon Nov 14 15:19:45 CST 2022 2022-11-14 21:19:47,840:INFO: STOP 15: refineA 15, 14 Thr, 13 R, 55 T, 42 F, 0 Q TotalTime= 0h 4.74m RunTime= 0h 4.57m CPUload=1146% saphyr1b 2022-11-14 21:19:47,946:INFO:Stage Summary: CharacterizeD_Assembly Number Genome Maps: 1882 Total Genome Map Length (Mbp): 2151.336 Mean Genome Map Length (Mbp): 1.143 Median Genome Map Length (Mbp): 0.447 Genome Map N50 (Mbp): 15.478 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 3.183 Total number of aligned Genome Maps : 1 (0.00) Total Aligned Length (Mbp) : 0.071 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.071 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 21:19:47,946:INFO:Characterize Assembly results check completed 2022-11-14 21:20:04,009:INFO: STOP 2: refineA 2, 56 Thr, 12 R, 55 T, 43 F, 0 Q TotalTime= 0h 5.01m RunTime= 0h 4.98m CPUload=3544% bionano2a 2022-11-14 21:20:40,511:INFO: STOP 9: refineA 9, 14 Thr, 11 R, 55 T, 44 F, 0 Q TotalTime= 0h 5.62m RunTime= 0h 5.49m CPUload=1241% saphyr1b 2022-11-14 21:20:43,047:INFO: alignmolvref completed in: 948.7s Result NOT Found: /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/merge/exp_refineFinal1.err OFFENDING ARGUMENTS: ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/merge/exp_refineFinal1 -i /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx -f -stdout -stderr -maxthreads 112 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -output-veto-filter '(intervals.txt|\.map)$' -mapped-unsplit 0 -T 1e-11 -A 8 -L 80 -S -1000 -nosplit 2 -biaswt 0.0 -biaswtEnd 0.0 -biaswtOutlier 0.0 -res 3.1 -resSD 0.75 -extend 1 -BestRef 1 -BestRefPV 1 -maptype 0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -insertThreads 4 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -outlier 0.0001 -endoutlier 0.0001 -sf 0.25 -sd 0.11 -minsites 9 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 2 -hash -hashdelta 14 10 24 -mres 0.9 -hashGC 300 -hashT2 1 -insertThreads 4 -XMAPmapWT 1 -nostat -rres 0.9 -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 && date Completed 1 jobs on 56 threads Clock time: 0h 15.81m CPU time : 0h 15.81m Begin machine parsable segment for: alignmolvref time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_alignmolvref 948.65964 10596.06 229.68 4:45.96 3785% 35248260 Mon Nov 14 15:19:37 CST 2022 2022-11-14 21:20:43,048:INFO:Starting alignment Align Stats stage for alignmolvref 2022-11-14 21:20:43,582:INFO:doref : reflen= 675.8657848000001 2022-11-14 21:20:43,583:INFO:Molecule statistics 2022-11-14 21:20:43,725:INFO: STOP 12: refineA 12, 14 Thr, 10 R, 55 T, 45 F, 0 Q TotalTime= 0h 5.67m RunTime= 0h 5.61m CPUload=1225% bionano1d 2022-11-14 21:20:46,181:INFO:Molecule Stats (/home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx): Total number of molecules: 737618 Total length (Mbp) : 253231.426 Average length (kbp) : 343.310 Molecule N50 (kbp) : 333.568 Label density (/100kb) : 15.673 Raw coverage of reference (X): 374.677 2022-11-14 21:20:46,193:INFO:Molecules aligned to reference: Total number of aligned molecules : 1355 Fraction of aligned molecules : 0.002 Total molecule align length (Mbp) : 170.4 Total reference align length (Mbp) : 174.6 Effective coverage of reference (X): 0.258 Average aligned length (kbp) : 125.8 Fraction aligned length : 0.001 Average confidence : 12.7 2022-11-14 21:20:46,193:INFO:Finished alignment Align Stats stage for alignmolvref 2022-11-14 21:20:46,194:INFO:Calling the copy number profiles pipeline. The log file is: /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/copynumber/cnv.log 2022-11-14 21:20:46,194:INFO:The command is: /home/bionano2/.conda/envs/bionano3/bin/Rscript /home/bionano/tools/pipeline/Solve3.7_03302022_283/Pipeline/03302022/Analysis/cnv/cnv_svd_outliers_reference_08292017/CNV.R --args --cnvScriptsFolder /home/bionano/tools/pipeline/Solve3.7_03302022_283/Pipeline/03302022/Analysis/cnv/cnv_svd_outliers_reference_08292017 --sampleName exp --sampleRcmap /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/merge --sampleXmap /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/merge --resultsDir /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/copynumber --outliersProbability 0.001 2022-11-14 21:21:02,555:INFO: STOP 8: refineA 8, 14 Thr, 9 R, 55 T, 46 F, 0 Q TotalTime= 0h 5.98m RunTime= 0h 5.95m CPUload=1348% bionano1b 2022-11-14 21:21:15,612:INFO: STOP 14: refineA 14, 14 Thr, 8 R, 55 T, 47 F, 0 Q TotalTime= 0h 6.20m RunTime= 0h 6.17m CPUload=1332% bionano1b 2022-11-14 21:21:36,638:INFO:Copy number profiles successfully completed 2022-11-14 21:21:50,517:INFO: STOP 11: refineA 11, 14 Thr, 7 R, 55 T, 48 F, 0 Q TotalTime= 0h 6.78m RunTime= 0h 6.71m CPUload=1245% bionano2b 2022-11-14 21:22:06,021:INFO: STOP 3: refineA 3, 56 Thr, 6 R, 55 T, 49 F, 0 Q TotalTime= 0h 7.04m RunTime= 0h 6.95m CPUload=2396% bionano1a 2022-11-14 21:22:10,189:INFO: STOP 13: refineA 13, 14 Thr, 5 R, 55 T, 50 F, 0 Q TotalTime= 0h 7.11m RunTime= 0h 6.95m CPUload=1262% bionano1c 2022-11-14 21:22:37,243:INFO: STOP 7: refineA 7, 14 Thr, 4 R, 55 T, 51 F, 0 Q TotalTime= 0h 7.56m RunTime= 0h 7.41m CPUload=1286% bionano1c 2022-11-14 21:22:56,137:INFO: STOP 1: refineA 1, 56 Thr, 3 R, 55 T, 52 F, 0 Q TotalTime= 0h 7.88m RunTime= 0h 7.86m CPUload=3090% bionano1a 2022-11-14 21:23:01,697:INFO: STOP 6: refineA 6, 14 Thr, 2 R, 55 T, 53 F, 0 Q TotalTime= 0h 7.97m RunTime= 0h 7.92m CPUload=1271% bionano2b 2022-11-14 21:23:13,375:INFO: STOP 10: refineA 10, 14 Thr, 1 R, 55 T, 54 F, 0 Q TotalTime= 0h 8.16m RunTime= 0h 8.12m CPUload=1284% saphyr1c 2022-11-14 21:24:48,591:INFO: STOP 5: refineA 5, 14 Thr, 0 R, 55 T, 55 F, 0 Q TotalTime= 0h 9.75m RunTime= 0h 9.71m CPUload=1306% saphyr1c 2022-11-14 21:24:48,592:INFO: Finished Multi-Threaded Process: refineA 2022-11-14 21:24:48,687:INFO: refineA 1 completed in: 472.9s Result Found refineA 2 completed in: 300.7s Result Found refineA 3 completed in: 422.7s Result Found refineA 4 completed in: 199.5s Result Found refineA 5 completed in: 585.2s Result Found refineA 6 completed in: 478.3s Result Found refineA 7 completed in: 453.8s Result Found refineA 8 completed in: 359.1s Result Found refineA 9 completed in: 337.0s Result Found refineA 10 completed in: 489.9s Result Found refineA 11 completed in: 407.0s Result Found refineA 12 completed in: 340.1s Result Found refineA 13 completed in: 426.6s Result Found refineA 14 completed in: 372.0s Result Found refineA 15 completed in: 284.2s Result Found refineA 16 completed in: 252.2s Result Found refineA 17 completed in: 222.5s Result Found refineA 18 completed in: 175.9s Result Found refineA 19 completed in: 165.5s Result Found refineA 20 completed in: 151.9s Result Found refineA 21 completed in: 77.5s Result Found refineA 22 completed in: 107.0s Result Found refineA 23 completed in: 43.1s Result Found refineA 24 completed in: 94.2s Result Found refineA 25 completed in: 109.7s Result Found refineA 26 completed in: 103.9s Result Found refineA 27 completed in: 84.5s Result Found refineA 28 completed in: 85.2s Result Found refineA 29 completed in: 91.6s Result Found refineA 30 completed in: 64.3s Result Found refineA 31 completed in: 82.0s Result Found refineA 32 completed in: 39.0s Result Found refineA 33 completed in: 83.9s Result Found refineA 34 completed in: 100.2s Result Found refineA 35 completed in: 92.6s Result Found refineA 36 completed in: 78.3s Result Found refineA 37 completed in: 80.1s Result Found refineA 38 completed in: 83.4s Result Found refineA 39 completed in: 64.0s Result Found refineA 40 completed in: 74.3s Result Found refineA 41 completed in: 35.0s Result Found refineA 42 completed in: 79.5s Result Found refineA 43 completed in: 95.9s Result Found refineA 44 completed in: 90.1s Result Found refineA 45 completed in: 74.1s Result Found refineA 46 completed in: 77.5s Result Found refineA 47 completed in: 79.8s Result Found refineA 48 completed in: 53.5s Result Found refineA 49 completed in: 74.5s Result Found refineA 50 completed in: 31.5s Result Found refineA 51 completed in: 75.4s Result Found refineA 52 completed in: 89.5s Result Found refineA 53 completed in: 88.1s Result Found refineA 54 completed in: 64.4s Result Found refineA 55 completed in: 51.5s Result Found Completed 55 jobs on 56 threads Clock time: 0h 9.76m CPU time : 2h 39.93m Begin machine parsable segment for: refineA time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineA_contig1 472.86128 14499.08 71.03 7:51.47 3090% 949960 Mon Nov 14 15:35:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig3 300.71041 10523.58 71.28 4:58.90 3544% 676572 Mon Nov 14 15:33:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig5 422.69841 9936.60 56.37 6:57.05 2396% 636392 Mon Nov 14 15:35:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig7 199.45766 4493.12 32.19 3:18.27 2282% 609708 Mon Nov 14 15:31:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig8 585.21971 7593.94 17.41 9:42.38 1306% 457824 Mon Nov 14 15:41:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig10 478.28805 6027.41 15.73 7:55.33 1271% 360444 Mon Nov 14 15:36:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig12 453.80086 5704.44 13.47 7:24.43 1286% 337340 Mon Nov 14 15:35:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig14 359.08737 4800.31 9.93 5:56.78 1348% 318552 Mon Nov 14 15:34:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig16 337.01952 4073.20 11.18 5:28.89 1241% 266228 Mon Nov 14 15:14:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig18 489.85862 6242.53 12.88 8:06.88 1284% 280892 Mon Nov 14 15:39:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig21 406.97637 4999.84 12.87 6:42.36 1245% 251404 Mon Nov 14 15:34:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig24 340.13769 4104.78 15.91 5:36.34 1225% 247444 Mon Nov 14 15:33:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig27 426.57667 5249.12 14.45 6:56.83 1262% 258284 Mon Nov 14 15:35:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig31 371.97581 4920.96 11.82 6:10.16 1332% 252896 Mon Nov 14 15:34:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig37 284.17745 3125.58 17.53 4:34.17 1146% 233252 Mon Nov 14 15:13:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig48 252.17601 2485.02 22.41 4:08.75 1008% 224476 Mon Nov 14 15:35:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig67 222.46980 1750.84 26.92 3:38.83 812% 215264 Mon Nov 14 15:31:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig98 175.94340 1143.76 31.13 2:52.88 679% 206864 Mon Nov 14 15:40:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig137 165.53839 887.58 27.37 2:42.25 563% 204592 Mon Nov 14 15:30:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig185 151.91528 529.24 24.30 2:22.57 388% 200600 Mon Nov 14 15:30:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig234 77.47878 298.04 11.80 1:15.32 411% 198472 Mon Nov 14 15:29:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig283 107.00566 207.87 20.53 1:38.77 231% 196308 Mon Nov 14 15:29:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig327 43.10727 132.11 7.68 0:40.51 345% 196020 Mon Nov 14 15:28:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig370 94.21129 133.11 10.49 1:25.96 167% 196040 Mon Nov 14 15:10:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig414 109.67102 119.76 9.26 1:45.07 122% 196076 Mon Nov 14 15:33:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig457 103.86796 116.65 9.02 1:37.41 129% 195624 Mon Nov 14 15:29:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig500 84.48068 117.82 10.07 1:21.60 156% 196088 Mon Nov 14 15:39:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig544 85.18613 106.43 9.45 1:21.26 142% 195800 Mon Nov 14 15:29:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig587 91.55806 107.27 8.38 1:09.97 165% 196148 Mon Nov 14 15:29:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig632 64.32389 93.81 4.46 0:51.25 191% 195544 Mon Nov 14 15:29:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig676 81.99352 101.37 8.54 1:03.72 172% 195768 Mon Nov 14 15:29:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig721 39.00607 85.28 5.20 0:33.47 270% 195756 Mon Nov 14 15:28:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig768 83.87703 92.92 8.42 1:01.74 164% 195792 Mon Nov 14 15:10:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig815 100.19926 89.38 7.18 1:18.70 122% 195424 Mon Nov 14 15:33:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig860 92.64422 82.62 6.68 1:09.05 129% 195520 Mon Nov 14 15:29:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig904 78.28892 88.37 7.70 0:56.50 170% 195640 Mon Nov 14 15:39:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig950 80.08180 83.66 7.81 0:58.38 156% 195592 Mon Nov 14 15:29:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig997 83.35835 79.78 7.05 0:59.60 145% 195832 Mon Nov 14 15:29:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1043 63.98361 84.87 4.30 0:51.34 173% 195644 Mon Nov 14 15:29:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1091 74.31960 80.07 7.03 0:53.40 163% 195596 Mon Nov 14 15:29:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1138 34.95594 67.95 4.36 0:29.88 241% 195768 Mon Nov 14 15:28:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1187 79.52344 76.37 7.27 0:54.48 153% 195632 Mon Nov 14 15:09:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1236 95.89169 75.79 6.64 1:13.36 112% 195684 Mon Nov 14 15:33:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1286 90.13914 69.91 6.59 1:06.38 115% 195780 Mon Nov 14 15:29:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1334 74.13876 74.28 6.89 0:51.60 157% 195480 Mon Nov 14 15:38:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1383 77.53013 72.00 7.25 0:54.93 144% 195496 Mon Nov 14 15:29:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1434 79.76439 67.36 7.34 0:54.94 135% 195504 Mon Nov 14 15:29:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1485 53.49176 69.79 3.68 0:46.70 157% 195540 Mon Nov 14 15:29:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1537 74.48123 67.51 7.25 0:51.15 146% 195620 Mon Nov 14 15:29:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1588 31.52319 53.83 3.75 0:25.63 224% 195544 Mon Nov 14 15:28:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1640 75.35863 59.92 6.94 0:49.45 135% 195628 Mon Nov 14 15:09:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1693 89.48188 51.70 5.82 1:06.42 86% 195144 Mon Nov 14 15:33:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1745 88.06325 43.36 6.71 1:03.42 78% 195248 Mon Nov 14 15:29:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1798 64.42107 32.63 5.96 0:41.23 93% 195376 Mon Nov 14 15:38:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineA_contig1851 51.47729 14.18 4.14 0:27.80 65% 195160 Mon Nov 14 15:28:57 CST 2022 2022-11-14 21:24:48,687:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 21:24:48,691:INFO:Loaded 5758 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 21:24:48,713:INFO:Found 1882 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 21:24:48,713:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:24:48,714:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:24:48,716:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_refineA 2022-11-14 21:24:48,716:INFO:conda_env=None,conda_source=None 2022-11-14 21:24:48,716:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 21:24:48,735:INFO: START 1: mrg_exp_refineA, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:24:52,039:INFO: STOP 1: mrg_exp_refineA, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.06m RunTime= 0h 0.03m CPUload=106% bionano2d 2022-11-14 21:24:52,039:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_refineA 2022-11-14 21:24:52,040:INFO: mrg_exp_refineA_0 completed in: 3.3s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.06m CPU time : 0h 0.06m Begin machine parsable segment for: Cmap_Merge_exp_refineA time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_refineA_0 3.30368 1.43 0.42 0:01.74 106% 155476 Mon Nov 14 15:37:54 CST 2022 2022-11-14 21:24:53,570:INFO:************************* Executing stage 12: refineB0 ************************* 2022-11-14 21:24:53,570:INFO:Starting stage refineB0 2022-11-14 21:24:53,570:INFO:refineB0 maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 21:24:53,571:INFO:Generating Jobs for refineB0, conf.extensionCount= 0 2022-11-14 21:24:53,571:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 21:24:53,573:INFO:Loaded 5761 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 21:24:53,587:INFO:Found 1882 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA 2022-11-14 21:24:53,588:INFO:Calling contigComputeWeights with ExtensionNoES= False 2022-11-14 21:24:53,670:INFO:MaxWeight = 90.00, witr= 0, threads= 56 (totThreads=56, minthreads=14, maxthreads=56), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_group_weights 2022-11-14 21:24:55,354:INFO:NumHostJobs= 5, TotalJobs= 453, HostWeight= 1347.398261955928, TargetWeight= 1246.847050944076, TotalWeight= 15585.58813680095 2022-11-14 21:24:55,359:INFO:refineB0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineA/EXP_REFINEA.cmap -T 1e-12 -usecolor 1 -A 5 -S 0 -L 130 -maptype 0 -extend 1 -MaxCov 80 -MaxCovWt 0 -contigsplit 0.20 0.25 /home/bionano/access/local/jobs/10230251/output/contigs/ID -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -splitFragile 20 2.0 0 -TrimNorm 0 30.0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -skip_dist 0.01 0.01 -endoutlierFinal 1 -RTHETA_FIX 0 -nosplit 2 -EndTrim 7.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtOutlier 0.0 -biaswtRefine 0.7 1 -PVres 2 -PVendoutlier -AlignRes 1.5 -rres 0.9 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -mres 0.9 -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 -BestRefWT 0 -AddFragsWT 0 -MultiMatches 0 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-4 1e-3 -outlierRef 1e-3 1e-2 -LRbias 1e0 -RefineRange 6 6 -RefineErr 1e-6 1e-6 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 6 -deltaYRef 6 -deltaExtXRef 8 -deltaExtYRef 8 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -TB 1e-6 1e-6 -TBmult 0 -FN_Refine 1.0 1.0 0.0 0.0 -cres 5.6 2 0.05 -cresCheckDel 1 -cresMaxLPdrop 4.0 -cresRefine -1 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 21:24:55,360:INFO: Starting Multi-Threaded Process: refineB0 2022-11-14 21:24:55,361:INFO:conda_env=None,conda_source=None 2022-11-14 21:24:55,361:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:24:55,376:INFO: START 1: refineB0 1, 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 21:24:55,401:INFO: START 2: refineB0 2, 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 21:24:55,425:INFO: START 3: refineB0 3, 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 21:24:55,450:INFO: START 4: refineB0 4, 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 21:24:55,475:INFO: START 5: refineB0 5, 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 21:24:55,499:INFO: START 6: refineB0 6, 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 21:24:55,523:INFO: START 7: refineB0 7, 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 21:24:55,548:INFO: START 8: refineB0 8, 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 21:24:55,572:INFO: START 9: refineB0 9, 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 21:24:55,597:INFO: START 10: refineB0 10, 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 21:24:55,633:INFO: START 11: refineB0 11, 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 21:24:55,663:INFO: START 12: refineB0 12, 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 21:24:55,697:INFO: START 13: refineB0 13, 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 21:24:55,730:INFO: START 14: refineB0 14, 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 21:24:55,755:INFO: START 15: refineB0 15, 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 21:24:55,779:INFO: START 16: refineB0 16, 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 21:25:37,572:INFO: STOP 14: refineB0 14, 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 0.70m RunTime= 0h 0.65m CPUload=3891% saphyr1c 2022-11-14 21:25:38,590:INFO: STOP 11: refineB0 11, 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 0.72m RunTime= 0h 0.67m CPUload=3856% bionano2b 2022-11-14 21:26:12,956:INFO: STOP 6: refineB0 6, 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 1.29m RunTime= 0h 1.26m CPUload=2074% bionano1b 2022-11-14 21:26:17,298:INFO: STOP 15: refineB0 15, 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 1.36m RunTime= 0h 1.32m CPUload=1968% bionano1b 2022-11-14 21:26:23,460:INFO: STOP 1: refineB0 1, 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 1.47m RunTime= 0h 1.45m CPUload=1827% bionano2d 2022-11-14 21:26:24,602:INFO: STOP 8: refineB0 8, 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 1.48m RunTime= 0h 1.44m CPUload=1839% bionano2d 2022-11-14 21:26:26,423:INFO: STOP 13: refineB0 13, 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 1.51m RunTime= 0h 1.48m CPUload=1781% saphyr1b 2022-11-14 21:26:26,458:INFO: STOP 7: refineB0 7, 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 1.52m RunTime= 0h 1.46m CPUload=1797% bionano1c 2022-11-14 21:26:27,477:INFO: STOP 16: refineB0 16, 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 1.53m RunTime= 0h 1.47m CPUload=1783% bionano1c 2022-11-14 21:26:27,546:INFO: STOP 2: refineB0 2, 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 1.54m RunTime= 0h 1.48m CPUload=1759% bionano2c 2022-11-14 21:26:27,570:INFO: STOP 9: refineB0 9, 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 1.53m RunTime= 0h 1.48m CPUload=1762% bionano2c 2022-11-14 21:26:28,283:INFO: STOP 10: refineB0 10, 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 1.54m RunTime= 0h 1.50m CPUload=1729% saphyr1d 2022-11-14 21:26:28,308:INFO: STOP 3: refineB0 3, 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.50m CPUload=1749% saphyr1d 2022-11-14 21:26:28,488:INFO: STOP 5: refineB0 5, 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.50m CPUload=1755% saphyr1b 2022-11-14 21:26:28,558:INFO: STOP 4: refineB0 4, 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.50m CPUload=1767% bionano1d 2022-11-14 21:26:28,560:INFO: STOP 12: refineB0 12, 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.50m CPUload=1753% bionano1d 2022-11-14 21:26:28,560:INFO: Finished Multi-Threaded Process: refineB0 2022-11-14 21:26:28,566:INFO: refineB0 1 completed in: 88.1s Result Found refineB0 2 completed in: 92.1s Result Found refineB0 3 completed in: 92.9s Result Found refineB0 4 completed in: 93.1s Result Found refineB0 5 completed in: 93.0s Result Found refineB0 6 completed in: 77.5s Result Found refineB0 7 completed in: 90.9s Result Found refineB0 8 completed in: 89.1s Result Found refineB0 9 completed in: 92.0s Result Found refineB0 10 completed in: 92.7s Result Found refineB0 11 completed in: 43.0s Result Found refineB0 12 completed in: 92.9s Result Found refineB0 13 completed in: 90.7s Result Found refineB0 14 completed in: 41.8s Result Found refineB0 15 completed in: 81.5s Result Found refineB0 16 completed in: 91.7s Result Found Completed 16 jobs on 56 threads Clock time: 0h 1.55m CPU time : 0h 22.38m Begin machine parsable segment for: refineB0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineB0_bnx1 88.08297 1552.14 33.88 1:26.80 1827% 2294248 Mon Nov 14 15:39:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx2 92.14434 1533.43 32.36 1:29.00 1759% 2294720 Mon Nov 14 15:39:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx3 92.88234 1541.90 30.63 1:29.89 1749% 2300972 Mon Nov 14 15:49:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx4 93.10738 1558.28 32.37 1:29.99 1767% 2291516 Mon Nov 14 15:39:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx5 93.01374 1548.29 34.22 1:30.15 1755% 2297428 Mon Nov 14 15:20:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx6 77.45711 1531.61 32.60 1:15.40 2074% 2295680 Mon Nov 14 15:39:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx7 90.93413 1548.97 30.23 1:27.83 1797% 2295972 Mon Nov 14 15:39:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx8 89.05380 1564.49 28.28 1:26.58 1839% 2303480 Mon Nov 14 15:39:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx9 91.99792 1534.70 32.32 1:28.92 1762% 2295256 Mon Nov 14 15:39:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx10 92.68638 1522.56 32.39 1:29.89 1729% 2294452 Mon Nov 14 15:49:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx11 42.95625 1524.02 33.98 0:40.40 3856% 2291884 Mon Nov 14 15:38:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx12 92.89623 1542.56 35.13 1:29.97 1753% 2293636 Mon Nov 14 15:39:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx13 90.72587 1547.38 34.43 1:28.78 1781% 2301772 Mon Nov 14 15:20:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx14 41.84154 1490.84 32.11 0:39.14 3891% 2298532 Mon Nov 14 15:42:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx15 81.54342 1521.72 31.99 1:18.93 1968% 2288408 Mon Nov 14 15:39:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB0_bnx16 91.69715 1538.45 31.19 1:28.02 1783% 2293780 Mon Nov 14 15:39:28 CST 2022 2022-11-14 21:26:28,566:INFO:************************* Executing stage 13: refineB1 ************************* 2022-11-14 21:26:28,566:INFO:Starting stage refineB1 2022-11-14 21:26:28,567:INFO:refineB1 maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 21:26:28,567:INFO:Generating Jobs for refineB1, conf.extensionCount= 0 2022-11-14 21:26:28,568:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0 inputContigPrefix= exp_refineB0 2022-11-14 21:26:28,642:INFO:refineB1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 56 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/exp_refineB1 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_group1 -f -stdout -stderr -T 1e-12 -usecolor 1 -A 5 -S 0 -L 130 -maptype 0 -extend 1 -MaxCov 80 -MaxCovWt 0 -contigsplit 0.20 0.25 /home/bionano/access/local/jobs/10230251/output/contigs/ID -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -splitFragile 20 2.0 0 -TrimNorm 0 30.0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -skip_dist 0.01 0.01 -endoutlierFinal 1 -RTHETA_FIX 0 -nosplit 2 -EndTrim 7.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtOutlier 0.0 -biaswtRefine 0.7 1 -PVres 2 -PVendoutlier -AlignRes 1.5 -rres 0.9 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -mres 0.9 -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 -BestRefWT 0 -AddFragsWT 0 -MultiMatches 0 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-4 1e-3 -outlierRef 1e-3 1e-2 -LRbias 1e0 -RefineRange 6 6 -RefineErr 1e-6 1e-6 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 6 -deltaYRef 6 -deltaExtXRef 8 -deltaExtYRef 8 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -TB 1e-6 1e-6 -TBmult 0 -FN_Refine 1.0 1.0 0.0 0.0 -cres 5.6 2 0.05 -cresCheckDel 1 -cresMaxLPdrop 4.0 -cresRefine -1 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 2 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB0/exp_refineB0_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 21:26:28,643:INFO: Starting Multi-Threaded Process: refineB1 2022-11-14 21:26:28,643:INFO:conda_env=None,conda_source=None 2022-11-14 21:26:28,643:INFO: Running 453 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:26:29,221:INFO: START 1: refineB1 1, 56 Thr, 1 R, 453 T, 0 F, 452 Q 2022-11-14 21:26:29,245:INFO: START 2: refineB1 2, 56 Thr, 2 R, 453 T, 0 F, 451 Q 2022-11-14 21:26:29,270:INFO: START 3: refineB1 3, 56 Thr, 3 R, 453 T, 0 F, 450 Q 2022-11-14 21:26:29,317:INFO: START 4: refineB1 4, 56 Thr, 4 R, 453 T, 0 F, 449 Q 2022-11-14 21:26:29,342:INFO: START 5: refineB1 5, 56 Thr, 5 R, 453 T, 0 F, 448 Q 2022-11-14 21:26:29,385:INFO: START 6: refineB1 6, 56 Thr, 6 R, 453 T, 0 F, 447 Q 2022-11-14 21:26:29,411:INFO: START 7: refineB1 7, 56 Thr, 7 R, 453 T, 0 F, 446 Q 2022-11-14 21:26:29,436:INFO: START 8: refineB1 8, 56 Thr, 8 R, 453 T, 0 F, 445 Q 2022-11-14 21:26:29,480:INFO: START 9: refineB1 9, 56 Thr, 9 R, 453 T, 0 F, 444 Q 2022-11-14 21:26:29,505:INFO: START 10: refineB1 10, 56 Thr, 10 R, 453 T, 0 F, 443 Q 2022-11-14 21:26:29,539:INFO: START 11: refineB1 11, 56 Thr, 11 R, 453 T, 0 F, 442 Q 2022-11-14 21:26:29,565:INFO: START 12: refineB1 12, 56 Thr, 12 R, 453 T, 0 F, 441 Q 2022-11-14 21:26:29,589:INFO: START 13: refineB1 13, 56 Thr, 13 R, 453 T, 0 F, 440 Q 2022-11-14 21:26:29,614:INFO: START 14: refineB1 14, 56 Thr, 14 R, 453 T, 0 F, 439 Q 2022-11-14 21:26:29,662:INFO: START 15: refineB1 15, 56 Thr, 15 R, 453 T, 0 F, 438 Q 2022-11-14 21:26:29,687:INFO: START 16: refineB1 16, 56 Thr, 16 R, 453 T, 0 F, 437 Q 2022-11-14 21:26:29,712:INFO: START 17: refineB1 17, 56 Thr, 17 R, 453 T, 0 F, 436 Q 2022-11-14 21:26:29,737:INFO: START 18: refineB1 18, 56 Thr, 18 R, 453 T, 0 F, 435 Q 2022-11-14 21:26:29,761:INFO: START 19: refineB1 19, 56 Thr, 19 R, 453 T, 0 F, 434 Q 2022-11-14 21:26:29,800:INFO: START 20: refineB1 20, 56 Thr, 20 R, 453 T, 0 F, 433 Q 2022-11-14 21:26:29,825:INFO: START 21: refineB1 21, 56 Thr, 21 R, 453 T, 0 F, 432 Q 2022-11-14 21:26:29,850:INFO: START 22: refineB1 22, 56 Thr, 22 R, 453 T, 0 F, 431 Q 2022-11-14 21:26:29,874:INFO: START 23: refineB1 23, 56 Thr, 23 R, 453 T, 0 F, 430 Q 2022-11-14 21:26:29,899:INFO: START 24: refineB1 24, 56 Thr, 24 R, 453 T, 0 F, 429 Q 2022-11-14 21:26:29,923:INFO: START 25: refineB1 25, 56 Thr, 25 R, 453 T, 0 F, 428 Q 2022-11-14 21:26:29,960:INFO: START 26: refineB1 26, 56 Thr, 26 R, 453 T, 0 F, 427 Q 2022-11-14 21:26:29,997:INFO: START 27: refineB1 27, 56 Thr, 27 R, 453 T, 0 F, 426 Q 2022-11-14 21:26:30,033:INFO: START 28: refineB1 28, 28 Thr, 28 R, 453 T, 0 F, 425 Q 2022-11-14 21:26:30,113:INFO: START 29: refineB1 29, 28 Thr, 29 R, 453 T, 0 F, 424 Q 2022-11-14 21:26:30,170:INFO: START 30: refineB1 30, 28 Thr, 30 R, 453 T, 0 F, 423 Q 2022-11-14 21:26:30,196:INFO: START 31: refineB1 31, 28 Thr, 31 R, 453 T, 0 F, 422 Q 2022-11-14 21:26:30,221:INFO: START 32: refineB1 32, 28 Thr, 32 R, 453 T, 0 F, 421 Q 2022-11-14 21:26:30,246:INFO: START 33: refineB1 33, 28 Thr, 33 R, 453 T, 0 F, 420 Q 2022-11-14 21:26:30,270:INFO: START 34: refineB1 34, 28 Thr, 34 R, 453 T, 0 F, 419 Q 2022-11-14 21:26:30,294:INFO: START 35: refineB1 35, 28 Thr, 35 R, 453 T, 0 F, 418 Q 2022-11-14 21:26:30,318:INFO: START 36: refineB1 36, 28 Thr, 36 R, 453 T, 0 F, 417 Q 2022-11-14 21:26:30,343:INFO: START 37: refineB1 37, 14 Thr, 37 R, 453 T, 0 F, 416 Q 2022-11-14 21:26:30,367:INFO: START 38: refineB1 45, 14 Thr, 38 R, 453 T, 0 F, 415 Q 2022-11-14 21:26:30,390:INFO: START 39: refineB1 46, 14 Thr, 39 R, 453 T, 0 F, 414 Q 2022-11-14 21:26:30,415:INFO: START 40: refineB1 38, 14 Thr, 40 R, 453 T, 0 F, 413 Q 2022-11-14 21:26:30,439:INFO: START 41: refineB1 39, 14 Thr, 41 R, 453 T, 0 F, 412 Q 2022-11-14 21:26:30,462:INFO: START 42: refineB1 47, 14 Thr, 42 R, 453 T, 0 F, 411 Q 2022-11-14 21:26:30,486:INFO: START 43: refineB1 48, 14 Thr, 43 R, 453 T, 0 F, 410 Q 2022-11-14 21:26:30,510:INFO: START 44: refineB1 57, 14 Thr, 44 R, 453 T, 0 F, 409 Q 2022-11-14 21:26:30,533:INFO: START 45: refineB1 58, 14 Thr, 45 R, 453 T, 0 F, 408 Q 2022-11-14 21:26:30,556:INFO: START 46: refineB1 40, 14 Thr, 46 R, 453 T, 0 F, 407 Q 2022-11-14 21:26:30,580:INFO: START 47: refineB1 49, 14 Thr, 47 R, 453 T, 0 F, 406 Q 2022-11-14 21:26:30,603:INFO: START 48: refineB1 59, 14 Thr, 48 R, 453 T, 0 F, 405 Q 2022-11-14 21:26:30,627:INFO: START 49: refineB1 60, 14 Thr, 49 R, 453 T, 0 F, 404 Q 2022-11-14 21:26:30,652:INFO: START 50: refineB1 92, 14 Thr, 50 R, 453 T, 0 F, 403 Q 2022-11-14 21:26:30,687:INFO: START 51: refineB1 93, 14 Thr, 51 R, 453 T, 0 F, 402 Q 2022-11-14 21:26:30,712:INFO: START 52: refineB1 94, 14 Thr, 52 R, 453 T, 0 F, 401 Q 2022-11-14 21:26:30,736:INFO: START 53: refineB1 95, 14 Thr, 53 R, 453 T, 0 F, 400 Q 2022-11-14 21:26:30,760:INFO: START 54: refineB1 61, 14 Thr, 54 R, 453 T, 0 F, 399 Q 2022-11-14 21:26:30,785:INFO: START 55: refineB1 96, 14 Thr, 55 R, 453 T, 0 F, 398 Q 2022-11-14 21:26:30,821:INFO: START 56: refineB1 97, 14 Thr, 56 R, 453 T, 0 F, 397 Q 2022-11-14 21:26:30,847:INFO: START 57: refineB1 98, 14 Thr, 57 R, 453 T, 0 F, 396 Q 2022-11-14 21:26:30,872:INFO: START 58: refineB1 99, 14 Thr, 58 R, 453 T, 0 F, 395 Q 2022-11-14 21:26:30,897:INFO: START 59: refineB1 100, 14 Thr, 59 R, 453 T, 0 F, 394 Q 2022-11-14 21:26:30,922:INFO: START 60: refineB1 50, 14 Thr, 60 R, 453 T, 0 F, 393 Q 2022-11-14 21:26:30,947:INFO: START 61: refineB1 101, 14 Thr, 61 R, 453 T, 0 F, 392 Q 2022-11-14 21:26:30,972:INFO: START 62: refineB1 102, 14 Thr, 62 R, 453 T, 0 F, 391 Q 2022-11-14 21:26:30,997:INFO: START 63: refineB1 62, 14 Thr, 63 R, 453 T, 0 F, 390 Q 2022-11-14 21:26:31,050:INFO: START 64: refineB1 103, 14 Thr, 64 R, 453 T, 0 F, 389 Q 2022-11-14 21:26:31,078:INFO: START 65: refineB1 104, 14 Thr, 65 R, 453 T, 0 F, 388 Q 2022-11-14 21:26:31,104:INFO: START 66: refineB1 105, 14 Thr, 66 R, 453 T, 0 F, 387 Q 2022-11-14 21:26:31,128:INFO: START 67: refineB1 189, 14 Thr, 67 R, 453 T, 0 F, 386 Q 2022-11-14 21:26:31,152:INFO: START 68: refineB1 190, 14 Thr, 68 R, 453 T, 0 F, 385 Q 2022-11-14 21:26:31,175:INFO: START 69: refineB1 191, 14 Thr, 69 R, 453 T, 0 F, 384 Q 2022-11-14 21:26:31,199:INFO: START 70: refineB1 106, 14 Thr, 70 R, 453 T, 0 F, 383 Q 2022-11-14 21:26:31,224:INFO: START 71: refineB1 192, 14 Thr, 71 R, 453 T, 0 F, 382 Q 2022-11-14 21:26:31,248:INFO: START 72: refineB1 107, 14 Thr, 72 R, 453 T, 0 F, 381 Q 2022-11-14 21:26:31,272:INFO: START 73: refineB1 63, 14 Thr, 73 R, 453 T, 0 F, 380 Q 2022-11-14 21:26:31,297:INFO: START 74: refineB1 41, 14 Thr, 74 R, 453 T, 0 F, 379 Q 2022-11-14 21:26:31,322:INFO: START 75: refineB1 193, 14 Thr, 75 R, 453 T, 0 F, 378 Q 2022-11-14 21:26:31,347:INFO: START 76: refineB1 42, 14 Thr, 76 R, 453 T, 0 F, 377 Q 2022-11-14 21:26:31,373:INFO: START 77: refineB1 108, 14 Thr, 77 R, 453 T, 0 F, 376 Q 2022-11-14 21:26:31,423:INFO: START 78: refineB1 194, 14 Thr, 78 R, 453 T, 0 F, 375 Q 2022-11-14 21:26:31,448:INFO: START 79: refineB1 109, 14 Thr, 79 R, 453 T, 0 F, 374 Q 2022-11-14 21:26:31,472:INFO: START 80: refineB1 195, 14 Thr, 80 R, 453 T, 0 F, 373 Q 2022-11-14 21:26:31,497:INFO: START 81: refineB1 110, 14 Thr, 81 R, 453 T, 0 F, 372 Q 2022-11-14 21:26:31,521:INFO: START 82: refineB1 111, 14 Thr, 82 R, 453 T, 0 F, 371 Q 2022-11-14 21:26:31,545:INFO: START 83: refineB1 196, 14 Thr, 83 R, 453 T, 0 F, 370 Q 2022-11-14 21:26:31,569:INFO: START 84: refineB1 51, 14 Thr, 84 R, 453 T, 0 F, 369 Q 2022-11-14 21:26:31,593:INFO: START 85: refineB1 64, 14 Thr, 85 R, 453 T, 0 F, 368 Q 2022-11-14 21:26:31,618:INFO: START 86: refineB1 112, 14 Thr, 86 R, 453 T, 0 F, 367 Q 2022-11-14 21:26:31,642:INFO: START 87: refineB1 197, 14 Thr, 87 R, 453 T, 0 F, 366 Q 2022-11-14 21:26:31,666:INFO: START 88: refineB1 113, 14 Thr, 88 R, 453 T, 0 F, 365 Q 2022-11-14 21:26:31,690:INFO: START 89: refineB1 198, 14 Thr, 89 R, 453 T, 0 F, 364 Q 2022-11-14 21:26:31,715:INFO: START 90: refineB1 199, 14 Thr, 90 R, 453 T, 0 F, 363 Q 2022-11-14 21:26:31,738:INFO: START 91: refineB1 114, 14 Thr, 91 R, 453 T, 0 F, 362 Q 2022-11-14 21:26:31,762:INFO: START 92: refineB1 200, 14 Thr, 92 R, 453 T, 0 F, 361 Q 2022-11-14 21:26:31,786:INFO: START 93: refineB1 65, 14 Thr, 93 R, 453 T, 0 F, 360 Q 2022-11-14 21:26:31,810:INFO: START 94: refineB1 115, 14 Thr, 94 R, 453 T, 0 F, 359 Q 2022-11-14 21:26:31,834:INFO: START 95: refineB1 201, 14 Thr, 95 R, 453 T, 0 F, 358 Q 2022-11-14 21:26:31,857:INFO: START 96: refineB1 116, 14 Thr, 96 R, 453 T, 0 F, 357 Q 2022-11-14 21:26:31,881:INFO: START 97: refineB1 202, 14 Thr, 97 R, 453 T, 0 F, 356 Q 2022-11-14 21:26:31,906:INFO: START 98: refineB1 117, 14 Thr, 98 R, 453 T, 0 F, 355 Q 2022-11-14 21:26:31,930:INFO: START 99: refineB1 203, 14 Thr, 99 R, 453 T, 0 F, 354 Q 2022-11-14 21:26:31,954:INFO: START 100: refineB1 118, 14 Thr, 100 R, 453 T, 0 F, 353 Q 2022-11-14 21:26:31,978:INFO: START 101: refineB1 204, 14 Thr, 101 R, 453 T, 0 F, 352 Q 2022-11-14 21:26:32,002:INFO: START 102: refineB1 119, 14 Thr, 102 R, 453 T, 0 F, 351 Q 2022-11-14 21:26:32,056:INFO: START 103: refineB1 205, 14 Thr, 103 R, 453 T, 0 F, 350 Q 2022-11-14 21:26:32,097:INFO: START 104: refineB1 206, 14 Thr, 104 R, 453 T, 0 F, 349 Q 2022-11-14 21:26:32,122:INFO: START 105: refineB1 120, 14 Thr, 105 R, 453 T, 0 F, 348 Q 2022-11-14 21:26:32,166:INFO: START 106: refineB1 66, 14 Thr, 106 R, 453 T, 0 F, 347 Q 2022-11-14 21:26:32,190:INFO: START 107: refineB1 207, 14 Thr, 107 R, 453 T, 0 F, 346 Q 2022-11-14 21:26:32,214:INFO: START 108: refineB1 121, 14 Thr, 108 R, 453 T, 0 F, 345 Q 2022-11-14 21:26:32,238:INFO: START 109: refineB1 208, 14 Thr, 109 R, 453 T, 0 F, 344 Q 2022-11-14 21:26:32,262:INFO: START 110: refineB1 209, 14 Thr, 110 R, 453 T, 0 F, 343 Q 2022-11-14 21:26:32,286:INFO: START 111: refineB1 122, 14 Thr, 111 R, 453 T, 0 F, 342 Q 2022-11-14 21:26:32,337:INFO: START 112: refineB1 210, 14 Thr, 112 R, 453 T, 0 F, 341 Q 2022-11-14 21:26:32,362:INFO: START 113: refineB1 211, 14 Thr, 113 R, 453 T, 0 F, 340 Q 2022-11-14 21:26:32,387:INFO: START 114: refineB1 123, 14 Thr, 114 R, 453 T, 0 F, 339 Q 2022-11-14 21:26:32,419:INFO: START 115: refineB1 67, 14 Thr, 115 R, 453 T, 0 F, 338 Q 2022-11-14 21:26:32,443:INFO: START 116: refineB1 212, 14 Thr, 116 R, 453 T, 0 F, 337 Q 2022-11-14 21:26:32,467:INFO: START 117: refineB1 124, 14 Thr, 117 R, 453 T, 0 F, 336 Q 2022-11-14 21:26:32,491:INFO: START 118: refineB1 213, 14 Thr, 118 R, 453 T, 0 F, 335 Q 2022-11-14 21:26:32,528:INFO: START 119: refineB1 125, 14 Thr, 119 R, 453 T, 0 F, 334 Q 2022-11-14 21:26:32,553:INFO: START 120: refineB1 52, 14 Thr, 120 R, 453 T, 0 F, 333 Q 2022-11-14 21:26:32,577:INFO: START 121: refineB1 126, 14 Thr, 121 R, 453 T, 0 F, 332 Q 2022-11-14 21:26:32,601:INFO: START 122: refineB1 214, 14 Thr, 122 R, 453 T, 0 F, 331 Q 2022-11-14 21:26:32,632:INFO: START 123: refineB1 215, 14 Thr, 123 R, 453 T, 0 F, 330 Q 2022-11-14 21:26:32,656:INFO: START 124: refineB1 127, 14 Thr, 124 R, 453 T, 0 F, 329 Q 2022-11-14 21:26:32,681:INFO: START 125: refineB1 128, 14 Thr, 125 R, 453 T, 0 F, 328 Q 2022-11-14 21:26:32,707:INFO: START 126: refineB1 216, 14 Thr, 126 R, 453 T, 0 F, 327 Q 2022-11-14 21:26:32,732:INFO: START 127: refineB1 129, 14 Thr, 127 R, 453 T, 0 F, 326 Q 2022-11-14 21:26:32,756:INFO: START 128: refineB1 217, 14 Thr, 128 R, 453 T, 0 F, 325 Q 2022-11-14 21:26:32,779:INFO: START 129: refineB1 130, 14 Thr, 129 R, 453 T, 0 F, 324 Q 2022-11-14 21:26:32,803:INFO: START 130: refineB1 218, 14 Thr, 130 R, 453 T, 0 F, 323 Q 2022-11-14 21:26:32,827:INFO: START 131: refineB1 131, 14 Thr, 131 R, 453 T, 0 F, 322 Q 2022-11-14 21:26:32,851:INFO: START 132: refineB1 219, 14 Thr, 132 R, 453 T, 0 F, 321 Q 2022-11-14 21:26:32,875:INFO: START 133: refineB1 132, 14 Thr, 133 R, 453 T, 0 F, 320 Q 2022-11-14 21:26:32,899:INFO: START 134: refineB1 133, 14 Thr, 134 R, 453 T, 0 F, 319 Q 2022-11-14 21:26:32,922:INFO: START 135: refineB1 220, 14 Thr, 135 R, 453 T, 0 F, 318 Q 2022-11-14 21:26:32,947:INFO: START 136: refineB1 68, 14 Thr, 136 R, 453 T, 0 F, 317 Q 2022-11-14 21:26:32,971:INFO: START 137: refineB1 221, 14 Thr, 137 R, 453 T, 0 F, 316 Q 2022-11-14 21:26:32,995:INFO: START 138: refineB1 134, 14 Thr, 138 R, 453 T, 0 F, 315 Q 2022-11-14 21:26:33,064:INFO: START 139: refineB1 222, 14 Thr, 139 R, 453 T, 0 F, 314 Q 2022-11-14 21:26:33,088:INFO: START 140: refineB1 223, 14 Thr, 140 R, 453 T, 0 F, 313 Q 2022-11-14 21:26:33,112:INFO: START 141: refineB1 135, 14 Thr, 141 R, 453 T, 0 F, 312 Q 2022-11-14 21:26:33,135:INFO: START 142: refineB1 224, 14 Thr, 142 R, 453 T, 0 F, 311 Q 2022-11-14 21:26:33,176:INFO: START 143: refineB1 225, 14 Thr, 143 R, 453 T, 0 F, 310 Q 2022-11-14 21:26:33,213:INFO: START 144: refineB1 136, 14 Thr, 144 R, 453 T, 0 F, 309 Q 2022-11-14 21:26:33,245:INFO: START 145: refineB1 137, 14 Thr, 145 R, 453 T, 0 F, 308 Q 2022-11-14 21:26:33,285:INFO: START 146: refineB1 53, 14 Thr, 146 R, 453 T, 0 F, 307 Q 2022-11-14 21:26:33,310:INFO: START 147: refineB1 69, 14 Thr, 147 R, 453 T, 0 F, 306 Q 2022-11-14 21:26:33,336:INFO: START 148: refineB1 138, 14 Thr, 148 R, 453 T, 0 F, 305 Q 2022-11-14 21:26:33,361:INFO: START 149: refineB1 226, 14 Thr, 149 R, 453 T, 0 F, 304 Q 2022-11-14 21:26:33,385:INFO: START 150: refineB1 70, 14 Thr, 150 R, 453 T, 0 F, 303 Q 2022-11-14 21:26:33,410:INFO: START 151: refineB1 139, 14 Thr, 151 R, 453 T, 0 F, 302 Q 2022-11-14 21:26:33,458:INFO: START 152: refineB1 43, 14 Thr, 152 R, 453 T, 0 F, 301 Q 2022-11-14 21:26:33,482:INFO: START 153: refineB1 140, 14 Thr, 153 R, 453 T, 0 F, 300 Q 2022-11-14 21:26:33,506:INFO: START 154: refineB1 227, 14 Thr, 154 R, 453 T, 0 F, 299 Q 2022-11-14 21:26:33,531:INFO: START 155: refineB1 71, 14 Thr, 155 R, 453 T, 0 F, 298 Q 2022-11-14 21:26:33,556:INFO: START 156: refineB1 228, 14 Thr, 156 R, 453 T, 0 F, 297 Q 2022-11-14 21:26:33,581:INFO: START 157: refineB1 141, 14 Thr, 157 R, 453 T, 0 F, 296 Q 2022-11-14 21:26:33,606:INFO: START 158: refineB1 229, 14 Thr, 158 R, 453 T, 0 F, 295 Q 2022-11-14 21:26:33,630:INFO: START 159: refineB1 142, 14 Thr, 159 R, 453 T, 0 F, 294 Q 2022-11-14 21:26:33,739:INFO: START 160: refineB1 230, 14 Thr, 160 R, 453 T, 0 F, 293 Q 2022-11-14 21:26:33,764:INFO: START 161: refineB1 44, 14 Thr, 161 R, 453 T, 0 F, 292 Q 2022-11-14 21:26:33,788:INFO: START 162: refineB1 231, 14 Thr, 162 R, 453 T, 0 F, 291 Q 2022-11-14 21:26:33,812:INFO: START 163: refineB1 143, 14 Thr, 163 R, 453 T, 0 F, 290 Q 2022-11-14 21:26:33,835:INFO: START 164: refineB1 144, 14 Thr, 164 R, 453 T, 0 F, 289 Q 2022-11-14 21:26:33,860:INFO: START 165: refineB1 72, 14 Thr, 165 R, 453 T, 0 F, 288 Q 2022-11-14 21:26:34,324:INFO: START 166: refineB1 232, 14 Thr, 166 R, 453 T, 0 F, 287 Q 2022-11-14 21:26:40,228:INFO: START 167: refineB1 233, 14 Thr, 167 R, 453 T, 0 F, 286 Q 2022-11-14 21:26:42,344:INFO: START 168: refineB1 145, 14 Thr, 168 R, 453 T, 0 F, 285 Q 2022-11-14 21:26:43,100:INFO: START 169: refineB1 73, 14 Thr, 169 R, 453 T, 0 F, 284 Q 2022-11-14 21:26:51,818:INFO: START 170: refineB1 234, 14 Thr, 170 R, 453 T, 0 F, 283 Q 2022-11-14 21:26:51,922:INFO: START 171: refineB1 146, 14 Thr, 171 R, 453 T, 0 F, 282 Q 2022-11-14 21:26:51,948:INFO: START 172: refineB1 235, 14 Thr, 172 R, 453 T, 0 F, 281 Q 2022-11-14 21:26:53,307:INFO: START 173: refineB1 147, 14 Thr, 173 R, 453 T, 0 F, 280 Q 2022-11-14 21:26:58,143:INFO: START 174: refineB1 236, 14 Thr, 174 R, 453 T, 0 F, 279 Q 2022-11-14 21:27:00,378:INFO: START 175: refineB1 237, 14 Thr, 175 R, 453 T, 0 F, 278 Q 2022-11-14 21:27:04,932:INFO: START 176: refineB1 74, 14 Thr, 176 R, 453 T, 0 F, 277 Q 2022-11-14 21:27:06,000:INFO: START 177: refineB1 148, 14 Thr, 177 R, 453 T, 0 F, 276 Q 2022-11-14 21:27:06,868:INFO: START 178: refineB1 238, 14 Thr, 178 R, 453 T, 0 F, 275 Q 2022-11-14 21:27:09,005:INFO: START 179: refineB1 149, 14 Thr, 179 R, 453 T, 0 F, 274 Q 2022-11-14 21:27:14,373:INFO: START 180: refineB1 239, 14 Thr, 180 R, 453 T, 0 F, 273 Q 2022-11-14 21:27:16,728:INFO: START 181: refineB1 240, 14 Thr, 181 R, 453 T, 0 F, 272 Q 2022-11-14 21:27:17,004:INFO: START 182: refineB1 150, 14 Thr, 182 R, 453 T, 0 F, 271 Q 2022-11-14 21:27:17,035:INFO: START 183: refineB1 241, 14 Thr, 183 R, 453 T, 0 F, 270 Q 2022-11-14 21:27:17,059:INFO: START 184: refineB1 151, 14 Thr, 184 R, 453 T, 0 F, 269 Q 2022-11-14 21:27:17,083:INFO: START 185: refineB1 242, 14 Thr, 185 R, 453 T, 0 F, 268 Q 2022-11-14 21:27:17,107:INFO: START 186: refineB1 243, 14 Thr, 186 R, 453 T, 0 F, 267 Q 2022-11-14 21:27:17,131:INFO: START 187: refineB1 54, 14 Thr, 187 R, 453 T, 0 F, 266 Q 2022-11-14 21:27:17,155:INFO: START 188: refineB1 152, 14 Thr, 188 R, 453 T, 0 F, 265 Q 2022-11-14 21:27:17,179:INFO: START 189: refineB1 244, 14 Thr, 189 R, 453 T, 0 F, 264 Q 2022-11-14 21:27:17,211:INFO: START 190: refineB1 153, 14 Thr, 190 R, 453 T, 0 F, 263 Q 2022-11-14 21:27:17,235:INFO: START 191: refineB1 245, 14 Thr, 191 R, 453 T, 0 F, 262 Q 2022-11-14 21:27:17,258:INFO: START 192: refineB1 75, 14 Thr, 192 R, 453 T, 0 F, 261 Q 2022-11-14 21:27:17,281:INFO: START 193: refineB1 154, 14 Thr, 193 R, 453 T, 0 F, 260 Q 2022-11-14 21:27:17,305:INFO: START 194: refineB1 246, 14 Thr, 194 R, 453 T, 0 F, 259 Q 2022-11-14 21:27:17,428:INFO: START 195: refineB1 155, 14 Thr, 195 R, 453 T, 0 F, 258 Q 2022-11-14 21:27:17,453:INFO: START 196: refineB1 247, 14 Thr, 196 R, 453 T, 0 F, 257 Q 2022-11-14 21:27:17,477:INFO: START 197: refineB1 156, 14 Thr, 197 R, 453 T, 0 F, 256 Q 2022-11-14 21:27:17,513:INFO: START 198: refineB1 157, 14 Thr, 198 R, 453 T, 0 F, 255 Q 2022-11-14 21:27:17,538:INFO: START 199: refineB1 248, 14 Thr, 199 R, 453 T, 0 F, 254 Q 2022-11-14 21:27:17,562:INFO: START 200: refineB1 76, 14 Thr, 200 R, 453 T, 0 F, 253 Q 2022-11-14 21:27:17,586:INFO: START 201: refineB1 249, 14 Thr, 201 R, 453 T, 0 F, 252 Q 2022-11-14 21:27:17,622:INFO: START 202: refineB1 158, 14 Thr, 202 R, 453 T, 0 F, 251 Q 2022-11-14 21:27:17,655:INFO: START 203: refineB1 77, 14 Thr, 203 R, 453 T, 0 F, 250 Q 2022-11-14 21:27:17,679:INFO: START 204: refineB1 159, 14 Thr, 204 R, 453 T, 0 F, 249 Q 2022-11-14 21:27:17,702:INFO: START 205: refineB1 250, 14 Thr, 205 R, 453 T, 0 F, 248 Q 2022-11-14 21:27:17,727:INFO: START 206: refineB1 160, 14 Thr, 206 R, 453 T, 0 F, 247 Q 2022-11-14 21:27:17,750:INFO: START 207: refineB1 251, 14 Thr, 207 R, 453 T, 0 F, 246 Q 2022-11-14 21:27:17,773:INFO: START 208: refineB1 78, 14 Thr, 208 R, 453 T, 0 F, 245 Q 2022-11-14 21:27:17,797:INFO: START 209: refineB1 161, 14 Thr, 209 R, 453 T, 0 F, 244 Q 2022-11-14 21:27:17,820:INFO: START 210: refineB1 252, 14 Thr, 210 R, 453 T, 0 F, 243 Q 2022-11-14 21:27:17,844:INFO: START 211: refineB1 253, 14 Thr, 211 R, 453 T, 0 F, 242 Q 2022-11-14 21:27:17,886:INFO: START 212: refineB1 162, 14 Thr, 212 R, 453 T, 0 F, 241 Q 2022-11-14 21:27:17,919:INFO: START 213: refineB1 79, 14 Thr, 213 R, 453 T, 0 F, 240 Q 2022-11-14 21:27:17,960:INFO: START 214: refineB1 254, 14 Thr, 214 R, 453 T, 0 F, 239 Q 2022-11-14 21:27:17,996:INFO: START 215: refineB1 163, 14 Thr, 215 R, 453 T, 0 F, 238 Q 2022-11-14 21:27:18,021:INFO: START 216: refineB1 255, 14 Thr, 216 R, 453 T, 0 F, 237 Q 2022-11-14 21:27:18,045:INFO: START 217: refineB1 256, 14 Thr, 217 R, 453 T, 0 F, 236 Q 2022-11-14 21:27:18,068:INFO: START 218: refineB1 164, 14 Thr, 218 R, 453 T, 0 F, 235 Q 2022-11-14 21:27:18,105:INFO: START 219: refineB1 257, 14 Thr, 219 R, 453 T, 0 F, 234 Q 2022-11-14 21:27:18,128:INFO: START 220: refineB1 165, 14 Thr, 220 R, 453 T, 0 F, 233 Q 2022-11-14 21:27:18,152:INFO: START 221: refineB1 80, 14 Thr, 221 R, 453 T, 0 F, 232 Q 2022-11-14 21:27:18,175:INFO: START 222: refineB1 258, 14 Thr, 222 R, 453 T, 0 F, 231 Q 2022-11-14 21:27:18,200:INFO: START 223: refineB1 166, 14 Thr, 223 R, 453 T, 0 F, 230 Q 2022-11-14 21:27:18,223:INFO: START 224: refineB1 259, 14 Thr, 224 R, 453 T, 0 F, 229 Q 2022-11-14 21:27:18,247:INFO: START 225: refineB1 167, 14 Thr, 225 R, 453 T, 0 F, 228 Q 2022-11-14 21:27:18,271:INFO: START 226: refineB1 260, 14 Thr, 226 R, 453 T, 0 F, 227 Q 2022-11-14 21:27:18,294:INFO: START 227: refineB1 55, 14 Thr, 227 R, 453 T, 0 F, 226 Q 2022-11-14 21:27:18,317:INFO: START 228: refineB1 168, 14 Thr, 228 R, 453 T, 0 F, 225 Q 2022-11-14 21:27:18,340:INFO: START 229: refineB1 261, 14 Thr, 229 R, 453 T, 0 F, 224 Q 2022-11-14 21:27:18,364:INFO: START 230: refineB1 81, 14 Thr, 230 R, 453 T, 0 F, 223 Q 2022-11-14 21:27:18,387:INFO: START 231: refineB1 169, 14 Thr, 231 R, 453 T, 0 F, 222 Q 2022-11-14 21:27:18,410:INFO: START 232: refineB1 262, 14 Thr, 232 R, 453 T, 0 F, 221 Q 2022-11-14 21:27:18,538:INFO: START 233: refineB1 170, 14 Thr, 233 R, 453 T, 0 F, 220 Q 2022-11-14 21:27:18,562:INFO: START 234: refineB1 263, 14 Thr, 234 R, 453 T, 0 F, 219 Q 2022-11-14 21:27:18,585:INFO: START 235: refineB1 171, 14 Thr, 235 R, 453 T, 0 F, 218 Q 2022-11-14 21:27:18,609:INFO: START 236: refineB1 172, 14 Thr, 236 R, 453 T, 0 F, 217 Q 2022-11-14 21:27:18,632:INFO: START 237: refineB1 82, 14 Thr, 237 R, 453 T, 0 F, 216 Q 2022-11-14 21:27:18,656:INFO: START 238: refineB1 264, 14 Thr, 238 R, 453 T, 0 F, 215 Q 2022-11-14 21:27:18,679:INFO: START 239: refineB1 173, 14 Thr, 239 R, 453 T, 0 F, 214 Q 2022-11-14 21:27:18,702:INFO: START 240: refineB1 83, 14 Thr, 240 R, 453 T, 0 F, 213 Q 2022-11-14 21:27:18,725:INFO: START 241: refineB1 265, 14 Thr, 241 R, 453 T, 0 F, 212 Q 2022-11-14 21:27:18,749:INFO: START 242: refineB1 266, 14 Thr, 242 R, 453 T, 0 F, 211 Q 2022-11-14 21:27:18,789:INFO: START 243: refineB1 174, 14 Thr, 243 R, 453 T, 0 F, 210 Q 2022-11-14 21:27:18,813:INFO: START 244: refineB1 84, 14 Thr, 244 R, 453 T, 0 F, 209 Q 2022-11-14 21:27:18,837:INFO: START 245: refineB1 267, 14 Thr, 245 R, 453 T, 0 F, 208 Q 2022-11-14 21:27:18,861:INFO: START 246: refineB1 268, 14 Thr, 246 R, 453 T, 0 F, 207 Q 2022-11-14 21:27:18,885:INFO: START 247: refineB1 269, 14 Thr, 247 R, 453 T, 0 F, 206 Q 2022-11-14 21:27:18,909:INFO: START 248: refineB1 270, 14 Thr, 248 R, 453 T, 0 F, 205 Q 2022-11-14 21:27:18,933:INFO: START 249: refineB1 271, 14 Thr, 249 R, 453 T, 0 F, 204 Q 2022-11-14 21:27:18,957:INFO: START 250: refineB1 272, 14 Thr, 250 R, 453 T, 0 F, 203 Q 2022-11-14 21:27:18,982:INFO: START 251: refineB1 273, 14 Thr, 251 R, 453 T, 0 F, 202 Q 2022-11-14 21:27:19,113:INFO: START 252: refineB1 274, 14 Thr, 252 R, 453 T, 0 F, 201 Q 2022-11-14 21:27:19,137:INFO: START 253: refineB1 275, 14 Thr, 253 R, 453 T, 0 F, 200 Q 2022-11-14 21:27:19,161:INFO: START 254: refineB1 276, 14 Thr, 254 R, 453 T, 0 F, 199 Q 2022-11-14 21:27:19,201:INFO: START 255: refineB1 277, 14 Thr, 255 R, 453 T, 0 F, 198 Q 2022-11-14 21:27:19,242:INFO: START 256: refineB1 278, 14 Thr, 256 R, 453 T, 0 F, 197 Q 2022-11-14 21:27:19,276:INFO: START 257: refineB1 279, 14 Thr, 257 R, 453 T, 0 F, 196 Q 2022-11-14 21:27:19,310:INFO: START 258: refineB1 280, 14 Thr, 258 R, 453 T, 0 F, 195 Q 2022-11-14 21:27:19,351:INFO: START 259: refineB1 281, 14 Thr, 259 R, 453 T, 0 F, 194 Q 2022-11-14 21:27:19,392:INFO: START 260: refineB1 282, 14 Thr, 260 R, 453 T, 0 F, 193 Q 2022-11-14 21:27:19,425:INFO: START 261: refineB1 283, 14 Thr, 261 R, 453 T, 0 F, 192 Q 2022-11-14 21:27:19,462:INFO: START 262: refineB1 284, 14 Thr, 262 R, 453 T, 0 F, 191 Q 2022-11-14 21:27:19,488:INFO: START 263: refineB1 285, 14 Thr, 263 R, 453 T, 0 F, 190 Q 2022-11-14 21:27:19,511:INFO: START 264: refineB1 286, 14 Thr, 264 R, 453 T, 0 F, 189 Q 2022-11-14 21:27:19,535:INFO: START 265: refineB1 287, 14 Thr, 265 R, 453 T, 0 F, 188 Q 2022-11-14 21:27:19,558:INFO: START 266: refineB1 288, 14 Thr, 266 R, 453 T, 0 F, 187 Q 2022-11-14 21:27:19,582:INFO: START 267: refineB1 289, 14 Thr, 267 R, 453 T, 0 F, 186 Q 2022-11-14 21:27:19,605:INFO: START 268: refineB1 290, 14 Thr, 268 R, 453 T, 0 F, 185 Q 2022-11-14 21:27:19,628:INFO: START 269: refineB1 291, 14 Thr, 269 R, 453 T, 0 F, 184 Q 2022-11-14 21:27:19,652:INFO: START 270: refineB1 292, 14 Thr, 270 R, 453 T, 0 F, 183 Q 2022-11-14 21:27:19,694:INFO: START 271: refineB1 293, 14 Thr, 271 R, 453 T, 0 F, 182 Q 2022-11-14 21:27:19,735:INFO: START 272: refineB1 294, 14 Thr, 272 R, 453 T, 0 F, 181 Q 2022-11-14 21:27:19,758:INFO: START 273: refineB1 295, 14 Thr, 273 R, 453 T, 0 F, 180 Q 2022-11-14 21:27:19,796:INFO: START 274: refineB1 296, 14 Thr, 274 R, 453 T, 0 F, 179 Q 2022-11-14 21:27:19,819:INFO: START 275: refineB1 297, 14 Thr, 275 R, 453 T, 0 F, 178 Q 2022-11-14 21:27:19,842:INFO: START 276: refineB1 298, 14 Thr, 276 R, 453 T, 0 F, 177 Q 2022-11-14 21:27:19,887:INFO: START 277: refineB1 299, 14 Thr, 277 R, 453 T, 0 F, 176 Q 2022-11-14 21:27:19,910:INFO: START 278: refineB1 300, 14 Thr, 278 R, 453 T, 0 F, 175 Q 2022-11-14 21:27:19,933:INFO: START 279: refineB1 301, 14 Thr, 279 R, 453 T, 0 F, 174 Q 2022-11-14 21:27:19,956:INFO: START 280: refineB1 302, 14 Thr, 280 R, 453 T, 0 F, 173 Q 2022-11-14 21:27:19,990:INFO: START 281: refineB1 303, 14 Thr, 281 R, 453 T, 0 F, 172 Q 2022-11-14 21:27:20,013:INFO: START 282: refineB1 304, 14 Thr, 282 R, 453 T, 0 F, 171 Q 2022-11-14 21:27:20,037:INFO: START 283: refineB1 305, 14 Thr, 283 R, 453 T, 0 F, 170 Q 2022-11-14 21:27:20,061:INFO: START 284: refineB1 306, 14 Thr, 284 R, 453 T, 0 F, 169 Q 2022-11-14 21:27:20,085:INFO: START 285: refineB1 307, 14 Thr, 285 R, 453 T, 0 F, 168 Q 2022-11-14 21:27:20,129:INFO: START 286: refineB1 308, 14 Thr, 286 R, 453 T, 0 F, 167 Q 2022-11-14 21:27:20,179:INFO: START 287: refineB1 309, 14 Thr, 287 R, 453 T, 0 F, 166 Q 2022-11-14 21:27:20,203:INFO: START 288: refineB1 310, 14 Thr, 288 R, 453 T, 0 F, 165 Q 2022-11-14 21:27:20,226:INFO: START 289: refineB1 311, 14 Thr, 289 R, 453 T, 0 F, 164 Q 2022-11-14 21:27:20,250:INFO: START 290: refineB1 312, 14 Thr, 290 R, 453 T, 0 F, 163 Q 2022-11-14 21:27:20,301:INFO: START 291: refineB1 313, 14 Thr, 291 R, 453 T, 0 F, 162 Q 2022-11-14 21:27:20,324:INFO: START 292: refineB1 314, 14 Thr, 292 R, 453 T, 0 F, 161 Q 2022-11-14 21:27:20,357:INFO: START 293: refineB1 315, 14 Thr, 293 R, 453 T, 0 F, 160 Q 2022-11-14 21:27:20,382:INFO: START 294: refineB1 316, 14 Thr, 294 R, 453 T, 0 F, 159 Q 2022-11-14 21:27:20,405:INFO: START 295: refineB1 317, 14 Thr, 295 R, 453 T, 0 F, 158 Q 2022-11-14 21:27:20,428:INFO: START 296: refineB1 318, 14 Thr, 296 R, 453 T, 0 F, 157 Q 2022-11-14 21:27:20,451:INFO: START 297: refineB1 319, 14 Thr, 297 R, 453 T, 0 F, 156 Q 2022-11-14 21:27:20,474:INFO: START 298: refineB1 320, 14 Thr, 298 R, 453 T, 0 F, 155 Q 2022-11-14 21:27:20,497:INFO: START 299: refineB1 321, 14 Thr, 299 R, 453 T, 0 F, 154 Q 2022-11-14 21:27:20,520:INFO: START 300: refineB1 322, 14 Thr, 300 R, 453 T, 0 F, 153 Q 2022-11-14 21:27:20,543:INFO: START 301: refineB1 323, 14 Thr, 301 R, 453 T, 0 F, 152 Q 2022-11-14 21:27:20,566:INFO: START 302: refineB1 324, 14 Thr, 302 R, 453 T, 0 F, 151 Q 2022-11-14 21:27:20,589:INFO: START 303: refineB1 325, 14 Thr, 303 R, 453 T, 0 F, 150 Q 2022-11-14 21:27:20,612:INFO: START 304: refineB1 326, 14 Thr, 304 R, 453 T, 0 F, 149 Q 2022-11-14 21:27:20,635:INFO: START 305: refineB1 327, 14 Thr, 305 R, 453 T, 0 F, 148 Q 2022-11-14 21:27:20,658:INFO: START 306: refineB1 328, 14 Thr, 306 R, 453 T, 0 F, 147 Q 2022-11-14 21:27:20,700:INFO: START 307: refineB1 329, 14 Thr, 307 R, 453 T, 0 F, 146 Q 2022-11-14 21:27:20,723:INFO: START 308: refineB1 330, 14 Thr, 308 R, 453 T, 0 F, 145 Q 2022-11-14 21:27:20,747:INFO: START 309: refineB1 331, 14 Thr, 309 R, 453 T, 0 F, 144 Q 2022-11-14 21:27:20,812:INFO: START 310: refineB1 332, 14 Thr, 310 R, 453 T, 0 F, 143 Q 2022-11-14 21:27:20,835:INFO: START 311: refineB1 333, 14 Thr, 311 R, 453 T, 0 F, 142 Q 2022-11-14 21:27:20,866:INFO: START 312: refineB1 334, 14 Thr, 312 R, 453 T, 0 F, 141 Q 2022-11-14 21:27:20,889:INFO: START 313: refineB1 335, 14 Thr, 313 R, 453 T, 0 F, 140 Q 2022-11-14 21:27:20,918:INFO: START 314: refineB1 336, 14 Thr, 314 R, 453 T, 0 F, 139 Q 2022-11-14 21:27:20,943:INFO: START 315: refineB1 337, 14 Thr, 315 R, 453 T, 0 F, 138 Q 2022-11-14 21:27:20,966:INFO: START 316: refineB1 338, 14 Thr, 316 R, 453 T, 0 F, 137 Q 2022-11-14 21:27:20,989:INFO: START 317: refineB1 339, 14 Thr, 317 R, 453 T, 0 F, 136 Q 2022-11-14 21:27:21,012:INFO: START 318: refineB1 340, 14 Thr, 318 R, 453 T, 0 F, 135 Q 2022-11-14 21:27:21,034:INFO: START 319: refineB1 341, 14 Thr, 319 R, 453 T, 0 F, 134 Q 2022-11-14 21:27:21,076:INFO: START 320: refineB1 342, 14 Thr, 320 R, 453 T, 0 F, 133 Q 2022-11-14 21:27:21,099:INFO: START 321: refineB1 343, 14 Thr, 321 R, 453 T, 0 F, 132 Q 2022-11-14 21:27:21,122:INFO: START 322: refineB1 344, 14 Thr, 322 R, 453 T, 0 F, 131 Q 2022-11-14 21:27:21,158:INFO: START 323: refineB1 345, 14 Thr, 323 R, 453 T, 0 F, 130 Q 2022-11-14 21:27:21,181:INFO: START 324: refineB1 346, 14 Thr, 324 R, 453 T, 0 F, 129 Q 2022-11-14 21:27:21,204:INFO: START 325: refineB1 347, 14 Thr, 325 R, 453 T, 0 F, 128 Q 2022-11-14 21:27:21,227:INFO: START 326: refineB1 348, 14 Thr, 326 R, 453 T, 0 F, 127 Q 2022-11-14 21:27:21,250:INFO: START 327: refineB1 349, 14 Thr, 327 R, 453 T, 0 F, 126 Q 2022-11-14 21:27:21,274:INFO: START 328: refineB1 350, 14 Thr, 328 R, 453 T, 0 F, 125 Q 2022-11-14 21:27:21,297:INFO: START 329: refineB1 351, 14 Thr, 329 R, 453 T, 0 F, 124 Q 2022-11-14 21:27:21,320:INFO: START 330: refineB1 352, 14 Thr, 330 R, 453 T, 0 F, 123 Q 2022-11-14 21:27:21,343:INFO: START 331: refineB1 353, 14 Thr, 331 R, 453 T, 0 F, 122 Q 2022-11-14 21:27:21,378:INFO: START 332: refineB1 354, 14 Thr, 332 R, 453 T, 0 F, 121 Q 2022-11-14 21:27:21,401:INFO: START 333: refineB1 355, 14 Thr, 333 R, 453 T, 0 F, 120 Q 2022-11-14 21:27:21,424:INFO: START 334: refineB1 356, 14 Thr, 334 R, 453 T, 0 F, 119 Q 2022-11-14 21:27:21,456:INFO: START 335: refineB1 357, 14 Thr, 335 R, 453 T, 0 F, 118 Q 2022-11-14 21:27:21,490:INFO: START 336: refineB1 358, 14 Thr, 336 R, 453 T, 0 F, 117 Q 2022-11-14 21:27:21,515:INFO: START 337: refineB1 359, 14 Thr, 337 R, 453 T, 0 F, 116 Q 2022-11-14 21:27:21,540:INFO: START 338: refineB1 360, 14 Thr, 338 R, 453 T, 0 F, 115 Q 2022-11-14 21:27:21,574:INFO: START 339: refineB1 361, 14 Thr, 339 R, 453 T, 0 F, 114 Q 2022-11-14 21:27:21,597:INFO: START 340: refineB1 362, 14 Thr, 340 R, 453 T, 0 F, 113 Q 2022-11-14 21:27:21,620:INFO: START 341: refineB1 363, 14 Thr, 341 R, 453 T, 0 F, 112 Q 2022-11-14 21:27:21,643:INFO: START 342: refineB1 364, 14 Thr, 342 R, 453 T, 0 F, 111 Q 2022-11-14 21:27:21,666:INFO: START 343: refineB1 365, 14 Thr, 343 R, 453 T, 0 F, 110 Q 2022-11-14 21:27:21,690:INFO: START 344: refineB1 366, 14 Thr, 344 R, 453 T, 0 F, 109 Q 2022-11-14 21:27:21,714:INFO: START 345: refineB1 367, 14 Thr, 345 R, 453 T, 0 F, 108 Q 2022-11-14 21:27:21,737:INFO: START 346: refineB1 368, 14 Thr, 346 R, 453 T, 0 F, 107 Q 2022-11-14 21:27:21,760:INFO: START 347: refineB1 369, 14 Thr, 347 R, 453 T, 0 F, 106 Q 2022-11-14 21:27:21,783:INFO: START 348: refineB1 370, 14 Thr, 348 R, 453 T, 0 F, 105 Q 2022-11-14 21:27:21,820:INFO: START 349: refineB1 371, 14 Thr, 349 R, 453 T, 0 F, 104 Q 2022-11-14 21:27:21,843:INFO: START 350: refineB1 372, 14 Thr, 350 R, 453 T, 0 F, 103 Q 2022-11-14 21:27:21,866:INFO: START 351: refineB1 373, 14 Thr, 351 R, 453 T, 0 F, 102 Q 2022-11-14 21:27:21,889:INFO: START 352: refineB1 374, 14 Thr, 352 R, 453 T, 0 F, 101 Q 2022-11-14 21:27:21,911:INFO: START 353: refineB1 375, 14 Thr, 353 R, 453 T, 0 F, 100 Q 2022-11-14 21:27:21,934:INFO: START 354: refineB1 376, 14 Thr, 354 R, 453 T, 0 F, 99 Q 2022-11-14 21:27:21,959:INFO: START 355: refineB1 377, 14 Thr, 355 R, 453 T, 0 F, 98 Q 2022-11-14 21:27:22,010:INFO: START 356: refineB1 378, 14 Thr, 356 R, 453 T, 0 F, 97 Q 2022-11-14 21:27:22,149:INFO: START 357: refineB1 379, 14 Thr, 357 R, 453 T, 0 F, 96 Q 2022-11-14 21:27:23,623:INFO: START 358: refineB1 380, 14 Thr, 358 R, 453 T, 0 F, 95 Q 2022-11-14 21:27:23,890:INFO: START 359: refineB1 381, 14 Thr, 359 R, 453 T, 0 F, 94 Q 2022-11-14 21:27:23,954:INFO: START 360: refineB1 382, 14 Thr, 360 R, 453 T, 0 F, 93 Q 2022-11-14 21:27:24,005:INFO: START 361: refineB1 383, 14 Thr, 361 R, 453 T, 0 F, 92 Q 2022-11-14 21:27:24,071:INFO: START 362: refineB1 384, 14 Thr, 362 R, 453 T, 0 F, 91 Q 2022-11-14 21:27:24,138:INFO: START 363: refineB1 385, 14 Thr, 363 R, 453 T, 0 F, 90 Q 2022-11-14 21:27:24,163:INFO: START 364: refineB1 386, 14 Thr, 364 R, 453 T, 0 F, 89 Q 2022-11-14 21:27:24,188:INFO: START 365: refineB1 387, 14 Thr, 365 R, 453 T, 0 F, 88 Q 2022-11-14 21:27:24,213:INFO: START 366: refineB1 388, 14 Thr, 366 R, 453 T, 0 F, 87 Q 2022-11-14 21:27:24,247:INFO: START 367: refineB1 389, 14 Thr, 367 R, 453 T, 0 F, 86 Q 2022-11-14 21:27:24,270:INFO: START 368: refineB1 390, 14 Thr, 368 R, 453 T, 0 F, 85 Q 2022-11-14 21:27:24,293:INFO: START 369: refineB1 391, 14 Thr, 369 R, 453 T, 0 F, 84 Q 2022-11-14 21:27:24,317:INFO: START 370: refineB1 392, 14 Thr, 370 R, 453 T, 0 F, 83 Q 2022-11-14 21:27:24,340:INFO: START 371: refineB1 393, 14 Thr, 371 R, 453 T, 0 F, 82 Q 2022-11-14 21:27:24,364:INFO: START 372: refineB1 394, 14 Thr, 372 R, 453 T, 0 F, 81 Q 2022-11-14 21:27:24,400:INFO: START 373: refineB1 395, 14 Thr, 373 R, 453 T, 0 F, 80 Q 2022-11-14 21:27:24,512:INFO: START 374: refineB1 396, 14 Thr, 374 R, 453 T, 0 F, 79 Q 2022-11-14 21:27:24,537:INFO: START 375: refineB1 397, 14 Thr, 375 R, 453 T, 0 F, 78 Q 2022-11-14 21:27:24,560:INFO: START 376: refineB1 398, 14 Thr, 376 R, 453 T, 0 F, 77 Q 2022-11-14 21:27:24,598:INFO: START 377: refineB1 399, 14 Thr, 377 R, 453 T, 0 F, 76 Q 2022-11-14 21:27:24,621:INFO: START 378: refineB1 400, 14 Thr, 378 R, 453 T, 0 F, 75 Q 2022-11-14 21:27:24,644:INFO: START 379: refineB1 401, 14 Thr, 379 R, 453 T, 0 F, 74 Q 2022-11-14 21:27:24,683:INFO: START 380: refineB1 402, 14 Thr, 380 R, 453 T, 0 F, 73 Q 2022-11-14 21:27:24,722:INFO: START 381: refineB1 403, 14 Thr, 381 R, 453 T, 0 F, 72 Q 2022-11-14 21:27:24,758:INFO: START 382: refineB1 404, 14 Thr, 382 R, 453 T, 0 F, 71 Q 2022-11-14 21:27:24,792:INFO: START 383: refineB1 405, 14 Thr, 383 R, 453 T, 0 F, 70 Q 2022-11-14 21:27:24,815:INFO: START 384: refineB1 406, 14 Thr, 384 R, 453 T, 0 F, 69 Q 2022-11-14 21:27:24,838:INFO: START 385: refineB1 407, 14 Thr, 385 R, 453 T, 0 F, 68 Q 2022-11-14 21:27:24,862:INFO: START 386: refineB1 408, 14 Thr, 386 R, 453 T, 0 F, 67 Q 2022-11-14 21:27:24,885:INFO: START 387: refineB1 409, 14 Thr, 387 R, 453 T, 0 F, 66 Q 2022-11-14 21:27:24,908:INFO: START 388: refineB1 410, 14 Thr, 388 R, 453 T, 0 F, 65 Q 2022-11-14 21:27:24,931:INFO: START 389: refineB1 411, 14 Thr, 389 R, 453 T, 0 F, 64 Q 2022-11-14 21:27:24,972:INFO: START 390: refineB1 412, 14 Thr, 390 R, 453 T, 0 F, 63 Q 2022-11-14 21:27:25,015:INFO: START 391: refineB1 413, 14 Thr, 391 R, 453 T, 0 F, 62 Q 2022-11-14 21:27:25,049:INFO: START 392: refineB1 414, 14 Thr, 392 R, 453 T, 0 F, 61 Q 2022-11-14 21:27:25,072:INFO: START 393: refineB1 415, 14 Thr, 393 R, 453 T, 0 F, 60 Q 2022-11-14 21:27:25,096:INFO: START 394: refineB1 416, 14 Thr, 394 R, 453 T, 0 F, 59 Q 2022-11-14 21:27:25,136:INFO: START 395: refineB1 417, 14 Thr, 395 R, 453 T, 0 F, 58 Q 2022-11-14 21:27:25,160:INFO: START 396: refineB1 418, 14 Thr, 396 R, 453 T, 0 F, 57 Q 2022-11-14 21:27:25,183:INFO: START 397: refineB1 419, 14 Thr, 397 R, 453 T, 0 F, 56 Q 2022-11-14 21:27:25,221:INFO: START 398: refineB1 420, 14 Thr, 398 R, 453 T, 0 F, 55 Q 2022-11-14 21:27:25,245:INFO: START 399: refineB1 421, 14 Thr, 399 R, 453 T, 0 F, 54 Q 2022-11-14 21:27:25,269:INFO: START 400: refineB1 422, 14 Thr, 400 R, 453 T, 0 F, 53 Q 2022-11-14 21:27:25,293:INFO: START 401: refineB1 423, 14 Thr, 401 R, 453 T, 0 F, 52 Q 2022-11-14 21:27:25,316:INFO: START 402: refineB1 424, 14 Thr, 402 R, 453 T, 0 F, 51 Q 2022-11-14 21:27:25,340:INFO: START 403: refineB1 425, 14 Thr, 403 R, 453 T, 0 F, 50 Q 2022-11-14 21:27:25,380:INFO: START 404: refineB1 426, 14 Thr, 404 R, 453 T, 0 F, 49 Q 2022-11-14 21:27:25,403:INFO: START 405: refineB1 427, 14 Thr, 405 R, 453 T, 0 F, 48 Q 2022-11-14 21:27:25,426:INFO: START 406: refineB1 428, 14 Thr, 406 R, 453 T, 0 F, 47 Q 2022-11-14 21:27:25,449:INFO: START 407: refineB1 429, 14 Thr, 407 R, 453 T, 0 F, 46 Q 2022-11-14 21:27:25,472:INFO: START 408: refineB1 430, 14 Thr, 408 R, 453 T, 0 F, 45 Q 2022-11-14 21:27:25,510:INFO: START 409: refineB1 431, 14 Thr, 409 R, 453 T, 0 F, 44 Q 2022-11-14 21:27:25,550:INFO: START 410: refineB1 432, 14 Thr, 410 R, 453 T, 0 F, 43 Q 2022-11-14 21:27:25,600:INFO: START 411: refineB1 433, 14 Thr, 411 R, 453 T, 0 F, 42 Q 2022-11-14 21:27:25,642:INFO: START 412: refineB1 434, 14 Thr, 412 R, 453 T, 0 F, 41 Q 2022-11-14 21:27:25,665:INFO: START 413: refineB1 435, 14 Thr, 413 R, 453 T, 0 F, 40 Q 2022-11-14 21:27:25,766:INFO: START 414: refineB1 436, 14 Thr, 414 R, 453 T, 0 F, 39 Q 2022-11-14 21:27:25,805:INFO: START 415: refineB1 437, 14 Thr, 415 R, 453 T, 0 F, 38 Q 2022-11-14 21:27:25,845:INFO: START 416: refineB1 438, 14 Thr, 416 R, 453 T, 0 F, 37 Q 2022-11-14 21:27:25,869:INFO: START 417: refineB1 439, 14 Thr, 417 R, 453 T, 0 F, 36 Q 2022-11-14 21:27:25,892:INFO: START 418: refineB1 440, 14 Thr, 418 R, 453 T, 0 F, 35 Q 2022-11-14 21:27:25,915:INFO: START 419: refineB1 441, 14 Thr, 419 R, 453 T, 0 F, 34 Q 2022-11-14 21:27:25,938:INFO: START 420: refineB1 442, 14 Thr, 420 R, 453 T, 0 F, 33 Q 2022-11-14 21:27:25,961:INFO: START 421: refineB1 443, 14 Thr, 421 R, 453 T, 0 F, 32 Q 2022-11-14 21:27:25,984:INFO: START 422: refineB1 444, 14 Thr, 422 R, 453 T, 0 F, 31 Q 2022-11-14 21:27:26,027:INFO: START 423: refineB1 445, 14 Thr, 423 R, 453 T, 0 F, 30 Q 2022-11-14 21:27:26,069:INFO: START 424: refineB1 446, 14 Thr, 424 R, 453 T, 0 F, 29 Q 2022-11-14 21:27:26,113:INFO: START 425: refineB1 447, 14 Thr, 425 R, 453 T, 0 F, 28 Q 2022-11-14 21:27:26,155:INFO: START 426: refineB1 448, 14 Thr, 426 R, 453 T, 0 F, 27 Q 2022-11-14 21:27:26,188:INFO: START 427: refineB1 449, 14 Thr, 427 R, 453 T, 0 F, 26 Q 2022-11-14 21:27:26,231:INFO: START 428: refineB1 450, 14 Thr, 428 R, 453 T, 0 F, 25 Q 2022-11-14 21:27:26,257:INFO: START 429: refineB1 451, 14 Thr, 429 R, 453 T, 0 F, 24 Q 2022-11-14 21:27:26,298:INFO: START 430: refineB1 452, 14 Thr, 430 R, 453 T, 0 F, 23 Q 2022-11-14 21:27:26,323:INFO: START 431: refineB1 85, 14 Thr, 431 R, 453 T, 0 F, 22 Q 2022-11-14 21:27:26,347:INFO: START 432: refineB1 175, 14 Thr, 432 R, 453 T, 0 F, 21 Q 2022-11-14 21:27:26,370:INFO: START 433: refineB1 176, 14 Thr, 433 R, 453 T, 0 F, 20 Q 2022-11-14 21:27:26,394:INFO: START 434: refineB1 177, 14 Thr, 434 R, 453 T, 0 F, 19 Q 2022-11-14 21:27:26,539:INFO: START 435: refineB1 86, 14 Thr, 435 R, 453 T, 0 F, 18 Q 2022-11-14 21:27:26,563:INFO: START 436: refineB1 178, 14 Thr, 436 R, 453 T, 0 F, 17 Q 2022-11-14 21:27:26,606:INFO: START 437: refineB1 179, 14 Thr, 437 R, 453 T, 0 F, 16 Q 2022-11-14 21:27:26,629:INFO: START 438: refineB1 180, 14 Thr, 438 R, 453 T, 0 F, 15 Q 2022-11-14 21:27:26,652:INFO: START 439: refineB1 87, 14 Thr, 439 R, 453 T, 0 F, 14 Q 2022-11-14 21:27:26,676:INFO: START 440: refineB1 181, 14 Thr, 440 R, 453 T, 0 F, 13 Q 2022-11-14 21:27:26,700:INFO: START 441: refineB1 182, 14 Thr, 441 R, 453 T, 0 F, 12 Q 2022-11-14 21:27:26,723:INFO: START 442: refineB1 56, 14 Thr, 442 R, 453 T, 0 F, 11 Q 2022-11-14 21:27:26,746:INFO: START 443: refineB1 183, 14 Thr, 443 R, 453 T, 0 F, 10 Q 2022-11-14 21:27:26,769:INFO: START 444: refineB1 88, 14 Thr, 444 R, 453 T, 0 F, 9 Q 2022-11-14 21:27:26,792:INFO: START 445: refineB1 184, 14 Thr, 445 R, 453 T, 0 F, 8 Q 2022-11-14 21:27:26,861:INFO: START 446: refineB1 185, 14 Thr, 446 R, 453 T, 0 F, 7 Q 2022-11-14 21:27:26,885:INFO: START 447: refineB1 89, 14 Thr, 447 R, 453 T, 0 F, 6 Q 2022-11-14 21:27:26,908:INFO: START 448: refineB1 186, 14 Thr, 448 R, 453 T, 0 F, 5 Q 2022-11-14 21:27:26,931:INFO: START 449: refineB1 187, 14 Thr, 449 R, 453 T, 0 F, 4 Q 2022-11-14 21:27:26,955:INFO: START 450: refineB1 90, 14 Thr, 450 R, 453 T, 0 F, 3 Q 2022-11-14 21:27:26,978:INFO: START 451: refineB1 188, 14 Thr, 451 R, 453 T, 0 F, 2 Q 2022-11-14 21:27:27,001:INFO: START 452: refineB1 91, 14 Thr, 452 R, 453 T, 0 F, 1 Q 2022-11-14 21:27:27,024:INFO: START 453: refineB1 453, 14 Thr, 453 R, 453 T, 0 F, 0 Q 2022-11-14 21:30:19,619:INFO: STOP 134: refineB1 133, 14 Thr, 452 R, 453 T, 1 F, 0 Q TotalTime= 0h 3.78m RunTime= 0h 3.65m CPUload=551% bionano2a 2022-11-14 21:31:55,282:INFO: STOP 147: refineB1 69, 14 Thr, 451 R, 453 T, 2 F, 0 Q TotalTime= 0h 5.37m RunTime= 0h 5.26m CPUload=313% saphyr1a 2022-11-14 21:32:15,322:INFO: STOP 135: refineB1 220, 14 Thr, 450 R, 453 T, 3 F, 0 Q TotalTime= 0h 5.71m RunTime= 0h 5.56m CPUload=520% bionano1a 2022-11-14 21:32:38,887:INFO: STOP 138: refineB1 134, 14 Thr, 449 R, 453 T, 4 F, 0 Q TotalTime= 0h 6.10m RunTime= 0h 6.07m CPUload=320% saphyr1a 2022-11-14 21:32:43,532:INFO: STOP 144: refineB1 136, 14 Thr, 448 R, 453 T, 5 F, 0 Q TotalTime= 0h 6.17m RunTime= 0h 6.11m CPUload=322% saphyr1a 2022-11-14 21:32:48,259:INFO: STOP 140: refineB1 223, 14 Thr, 447 R, 453 T, 6 F, 0 Q TotalTime= 0h 6.25m RunTime= 0h 6.16m CPUload=284% saphyr1a 2022-11-14 21:33:06,932:INFO: STOP 146: refineB1 53, 14 Thr, 446 R, 453 T, 7 F, 0 Q TotalTime= 0h 6.56m RunTime= 0h 6.50m CPUload=368% saphyr1a 2022-11-14 21:33:11,628:INFO: STOP 143: refineB1 225, 14 Thr, 445 R, 453 T, 8 F, 0 Q TotalTime= 0h 6.64m RunTime= 0h 6.60m CPUload=292% saphyr1a 2022-11-14 21:33:16,331:INFO: STOP 139: refineB1 222, 14 Thr, 444 R, 453 T, 9 F, 0 Q TotalTime= 0h 6.72m RunTime= 0h 6.62m CPUload=277% saphyr1a 2022-11-14 21:33:39,594:INFO: STOP 137: refineB1 221, 14 Thr, 443 R, 453 T, 10 F, 0 Q TotalTime= 0h 7.11m RunTime= 0h 7.06m CPUload=281% saphyr1a 2022-11-14 21:34:08,453:INFO: STOP 148: refineB1 138, 14 Thr, 442 R, 453 T, 11 F, 0 Q TotalTime= 0h 7.59m RunTime= 0h 7.53m CPUload=321% saphyr1a 2022-11-14 21:34:13,071:INFO: STOP 150: refineB1 70, 14 Thr, 441 R, 453 T, 12 F, 0 Q TotalTime= 0h 7.66m RunTime= 0h 3.89m CPUload=488% bionano2a 2022-11-14 21:34:13,105:INFO: STOP 141: refineB1 135, 14 Thr, 440 R, 453 T, 13 F, 0 Q TotalTime= 0h 7.67m RunTime= 0h 7.62m CPUload=305% saphyr1a 2022-11-14 21:34:13,106:INFO: STOP 136: refineB1 68, 14 Thr, 439 R, 453 T, 14 F, 0 Q TotalTime= 0h 7.67m RunTime= 0h 7.65m CPUload=325% saphyr1a 2022-11-14 21:34:59,734:INFO: STOP 76: refineB1 42, 14 Thr, 438 R, 453 T, 15 F, 0 Q TotalTime= 0h 8.47m RunTime= 0h 8.33m CPUload=427% bionano1d 2022-11-14 21:35:26,682:INFO: STOP 145: refineB1 137, 14 Thr, 437 R, 453 T, 16 F, 0 Q TotalTime= 0h 8.89m RunTime= 0h 8.80m CPUload=320% saphyr1a 2022-11-14 21:35:40,980:INFO: STOP 142: refineB1 224, 14 Thr, 436 R, 453 T, 17 F, 0 Q TotalTime= 0h 9.13m RunTime= 0h 9.03m CPUload=302% saphyr1a 2022-11-14 21:35:41,332:INFO: STOP 100: refineB1 118, 14 Thr, 435 R, 453 T, 18 F, 0 Q TotalTime= 0h 9.16m RunTime= 0h 9.09m CPUload=221% bionano1b 2022-11-14 21:35:41,586:INFO: STOP 74: refineB1 41, 14 Thr, 434 R, 453 T, 19 F, 0 Q TotalTime= 0h 9.17m RunTime= 0h 8.92m CPUload=381% saphyr1d 2022-11-14 21:35:50,074:INFO: STOP 149: refineB1 226, 14 Thr, 433 R, 453 T, 20 F, 0 Q TotalTime= 0h 9.28m RunTime= 0h 9.17m CPUload=299% saphyr1a 2022-11-14 21:35:55,598:INFO: STOP 37: refineB1 37, 14 Thr, 432 R, 453 T, 21 F, 0 Q TotalTime= 0h 9.42m RunTime= 0h 9.28m CPUload=486% saphyr1c 2022-11-14 21:36:03,666:INFO: STOP 152: refineB1 43, 14 Thr, 431 R, 453 T, 22 F, 0 Q TotalTime= 0h 9.50m RunTime= 0h 3.79m CPUload=594% bionano1a 2022-11-14 21:36:13,600:INFO: STOP 46: refineB1 40, 14 Thr, 430 R, 453 T, 23 F, 0 Q TotalTime= 0h 9.72m RunTime= 0h 9.55m CPUload=427% bionano1c 2022-11-14 21:36:13,718:INFO: STOP 33: refineB1 33, 28 Thr, 429 R, 453 T, 24 F, 0 Q TotalTime= 0h 9.72m RunTime= 0h 9.56m CPUload=502% bionano2c 2022-11-14 21:36:31,581:INFO: STOP 43: refineB1 48, 14 Thr, 428 R, 453 T, 25 F, 0 Q TotalTime= 0h 10.02m RunTime= 0h 9.88m CPUload=333% bionano2c 2022-11-14 21:36:49,027:INFO: STOP 93: refineB1 65, 14 Thr, 427 R, 453 T, 26 F, 0 Q TotalTime= 0h 10.29m RunTime= 0h 10.23m CPUload=249% bionano2d 2022-11-14 21:36:49,135:INFO: STOP 82: refineB1 111, 14 Thr, 426 R, 453 T, 27 F, 0 Q TotalTime= 0h 10.29m RunTime= 0h 10.17m CPUload=173% saphyr1c 2022-11-14 21:36:49,568:INFO: STOP 35: refineB1 35, 28 Thr, 425 R, 453 T, 28 F, 0 Q TotalTime= 0h 10.32m RunTime= 0h 10.13m CPUload=516% bionano2b 2022-11-14 21:36:53,983:INFO: STOP 40: refineB1 38, 14 Thr, 424 R, 453 T, 29 F, 0 Q TotalTime= 0h 10.39m RunTime= 0h 10.27m CPUload=460% saphyr1c 2022-11-14 21:36:57,726:INFO: STOP 114: refineB1 123, 14 Thr, 423 R, 453 T, 30 F, 0 Q TotalTime= 0h 10.42m RunTime= 0h 10.36m CPUload=240% bionano1b 2022-11-14 21:36:58,441:INFO: STOP 36: refineB1 36, 28 Thr, 422 R, 453 T, 31 F, 0 Q TotalTime= 0h 10.47m RunTime= 0h 10.31m CPUload=531% saphyr1b 2022-11-14 21:37:02,762:INFO: STOP 50: refineB1 92, 14 Thr, 421 R, 453 T, 32 F, 0 Q TotalTime= 0h 10.54m RunTime= 0h 10.44m CPUload=238% bionano1b 2022-11-14 21:37:06,423:INFO: STOP 128: refineB1 217, 14 Thr, 420 R, 453 T, 33 F, 0 Q TotalTime= 0h 10.56m RunTime= 0h 10.53m CPUload=236% bionano1b 2022-11-14 21:37:11,411:INFO: STOP 65: refineB1 104, 14 Thr, 419 R, 453 T, 34 F, 0 Q TotalTime= 0h 10.67m RunTime= 0h 10.54m CPUload=197% saphyr1b 2022-11-14 21:37:11,517:INFO: STOP 54: refineB1 61, 14 Thr, 418 R, 453 T, 35 F, 0 Q TotalTime= 0h 10.68m RunTime= 0h 10.54m CPUload=239% bionano2b 2022-11-14 21:37:16,412:INFO: STOP 106: refineB1 66, 14 Thr, 417 R, 453 T, 36 F, 0 Q TotalTime= 0h 10.74m RunTime= 0h 10.55m CPUload=235% bionano1d 2022-11-14 21:37:16,697:INFO: STOP 73: refineB1 63, 14 Thr, 416 R, 453 T, 37 F, 0 Q TotalTime= 0h 10.76m RunTime= 0h 10.58m CPUload=270% saphyr1b 2022-11-14 21:37:16,824:INFO: STOP 59: refineB1 100, 14 Thr, 415 R, 453 T, 38 F, 0 Q TotalTime= 0h 10.77m RunTime= 0h 10.67m CPUload=244% bionano1b 2022-11-14 21:37:21,165:INFO: STOP 60: refineB1 50, 14 Thr, 414 R, 453 T, 39 F, 0 Q TotalTime= 0h 10.84m RunTime= 0h 10.64m CPUload=326% bionano1d 2022-11-14 21:37:33,658:INFO: STOP 120: refineB1 52, 14 Thr, 413 R, 453 T, 40 F, 0 Q TotalTime= 0h 11.02m RunTime= 0h 10.95m CPUload=287% bionano1b 2022-11-14 21:37:50,871:INFO: STOP 131: refineB1 131, 14 Thr, 412 R, 453 T, 41 F, 0 Q TotalTime= 0h 11.30m RunTime= 0h 11.05m CPUload=160% bionano1d 2022-11-14 21:37:51,399:INFO: STOP 70: refineB1 106, 14 Thr, 411 R, 453 T, 42 F, 0 Q TotalTime= 0h 11.34m RunTime= 0h 11.27m CPUload=229% bionano2d 2022-11-14 21:38:00,083:INFO: STOP 62: refineB1 102, 14 Thr, 410 R, 453 T, 43 F, 0 Q TotalTime= 0h 11.49m RunTime= 0h 11.39m CPUload=238% bionano2d 2022-11-14 21:38:00,190:INFO: STOP 47: refineB1 49, 14 Thr, 409 R, 453 T, 44 F, 0 Q TotalTime= 0h 11.49m RunTime= 0h 11.35m CPUload=336% saphyr1b 2022-11-14 21:38:07,860:INFO: STOP 171: refineB1 146, 14 Thr, 408 R, 453 T, 45 F, 0 Q TotalTime= 0h 11.27m RunTime= 0h 2.03m CPUload=603% bionano1a 2022-11-14 21:38:08,797:INFO: STOP 42: refineB1 47, 14 Thr, 407 R, 453 T, 46 F, 0 Q TotalTime= 0h 11.64m RunTime= 0h 11.44m CPUload=353% bionano1d 2022-11-14 21:38:18,142:INFO: STOP 51: refineB1 93, 14 Thr, 406 R, 453 T, 47 F, 0 Q TotalTime= 0h 11.79m RunTime= 0h 11.63m CPUload=192% bionano1d 2022-11-14 21:38:18,176:INFO: STOP 44: refineB1 57, 14 Thr, 405 R, 453 T, 48 F, 0 Q TotalTime= 0h 11.79m RunTime= 0h 11.67m CPUload=262% bionano2d 2022-11-14 21:38:22,069:INFO: STOP 92: refineB1 200, 14 Thr, 404 R, 453 T, 49 F, 0 Q TotalTime= 0h 11.84m RunTime= 0h 11.78m CPUload=224% bionano1b 2022-11-14 21:38:22,365:INFO: STOP 53: refineB1 95, 14 Thr, 403 R, 453 T, 50 F, 0 Q TotalTime= 0h 11.86m RunTime= 0h 11.76m CPUload=231% bionano2d 2022-11-14 21:38:25,837:INFO: STOP 161: refineB1 44, 14 Thr, 402 R, 453 T, 51 F, 0 Q TotalTime= 0h 11.87m RunTime= 0h 4.16m CPUload=699% bionano2a 2022-11-14 21:38:39,142:INFO: STOP 115: refineB1 67, 14 Thr, 401 R, 453 T, 52 F, 0 Q TotalTime= 0h 12.11m RunTime= 0h 11.87m CPUload=165% bionano1c 2022-11-14 21:38:40,007:INFO: STOP 4: refineB1 4, 56 Thr, 400 R, 453 T, 53 F, 0 Q TotalTime= 0h 12.18m RunTime= 0h 12.11m CPUload=2250% bionano1a 2022-11-14 21:38:47,970:INFO: STOP 61: refineB1 101, 14 Thr, 399 R, 453 T, 54 F, 0 Q TotalTime= 0h 12.28m RunTime= 0h 12.14m CPUload=142% bionano2c 2022-11-14 21:38:52,596:INFO: STOP 3: refineB1 3, 56 Thr, 398 R, 453 T, 55 F, 0 Q TotalTime= 0h 12.39m RunTime= 0h 12.36m CPUload=2382% bionano1a 2022-11-14 21:38:55,779:INFO: STOP 151: refineB1 139, 14 Thr, 397 R, 453 T, 56 F, 0 Q TotalTime= 0h 12.37m RunTime= 0h 6.98m CPUload=288% saphyr1a 2022-11-14 21:39:00,358:INFO: STOP 84: refineB1 51, 14 Thr, 396 R, 453 T, 57 F, 0 Q TotalTime= 0h 12.48m RunTime= 0h 12.26m CPUload=309% bionano2c 2022-11-14 21:39:08,474:INFO: STOP 105: refineB1 120, 14 Thr, 395 R, 453 T, 58 F, 0 Q TotalTime= 0h 12.61m RunTime= 0h 12.38m CPUload=221% saphyr1c 2022-11-14 21:39:16,800:INFO: STOP 98: refineB1 117, 14 Thr, 394 R, 453 T, 59 F, 0 Q TotalTime= 0h 12.75m RunTime= 0h 12.59m CPUload=191% bionano1d 2022-11-14 21:39:20,573:INFO: STOP 159: refineB1 142, 14 Thr, 393 R, 453 T, 60 F, 0 Q TotalTime= 0h 12.78m RunTime= 0h 5.66m CPUload=289% saphyr1a 2022-11-14 21:39:20,712:INFO: STOP 124: refineB1 127, 14 Thr, 392 R, 453 T, 61 F, 0 Q TotalTime= 0h 12.80m RunTime= 0h 12.76m CPUload=236% bionano1b 2022-11-14 21:39:24,252:INFO: STOP 203: refineB1 77, 14 Thr, 391 R, 453 T, 62 F, 0 Q TotalTime= 0h 12.11m RunTime= 0h 0.93m CPUload=1124% bionano2a 2022-11-14 21:39:25,379:INFO: STOP 41: refineB1 39, 14 Thr, 390 R, 453 T, 63 F, 0 Q TotalTime= 0h 12.92m RunTime= 0h 12.85m CPUload=347% bionano1b 2022-11-14 21:39:37,029:INFO: STOP 133: refineB1 132, 14 Thr, 389 R, 453 T, 64 F, 0 Q TotalTime= 0h 13.07m RunTime= 0h 12.79m CPUload=177% bionano1d 2022-11-14 21:39:37,536:INFO: STOP 66: refineB1 105, 14 Thr, 388 R, 453 T, 65 F, 0 Q TotalTime= 0h 13.11m RunTime= 0h 12.88m CPUload=162% saphyr1d 2022-11-14 21:39:37,674:INFO: STOP 32: refineB1 32, 28 Thr, 387 R, 453 T, 66 F, 0 Q TotalTime= 0h 13.12m RunTime= 0h 12.90m CPUload=502% saphyr1d 2022-11-14 21:39:37,961:INFO: STOP 2: refineB1 2, 56 Thr, 386 R, 453 T, 67 F, 0 Q TotalTime= 0h 13.15m RunTime= 0h 13.11m CPUload=2150% bionano2a 2022-11-14 21:39:41,072:INFO: STOP 154: refineB1 227, 14 Thr, 385 R, 453 T, 68 F, 0 Q TotalTime= 0h 13.13m RunTime= 0h 6.88m CPUload=278% saphyr1a 2022-11-14 21:39:41,515:INFO: STOP 77: refineB1 108, 14 Thr, 384 R, 453 T, 69 F, 0 Q TotalTime= 0h 13.17m RunTime= 0h 12.93m CPUload=197% bionano2c 2022-11-14 21:39:45,318:INFO: STOP 108: refineB1 121, 14 Thr, 383 R, 453 T, 70 F, 0 Q TotalTime= 0h 13.22m RunTime= 0h 13.18m CPUload=232% bionano1b 2022-11-14 21:39:46,035:INFO: STOP 1: refineB1 1, 56 Thr, 382 R, 453 T, 71 F, 0 Q TotalTime= 0h 13.28m RunTime= 0h 13.22m CPUload=2458% bionano2a 2022-11-14 21:39:49,136:INFO: STOP 153: refineB1 140, 14 Thr, 381 R, 453 T, 72 F, 0 Q TotalTime= 0h 13.26m RunTime= 0h 7.08m CPUload=312% saphyr1a 2022-11-14 21:39:53,668:INFO: STOP 56: refineB1 97, 14 Thr, 380 R, 453 T, 73 F, 0 Q TotalTime= 0h 13.38m RunTime= 0h 13.30m CPUload=181% saphyr1b 2022-11-14 21:40:09,085:INFO: STOP 158: refineB1 229, 14 Thr, 379 R, 453 T, 74 F, 0 Q TotalTime= 0h 13.59m RunTime= 0h 6.86m CPUload=295% saphyr1a 2022-11-14 21:40:09,393:INFO: STOP 95: refineB1 201, 14 Thr, 378 R, 453 T, 75 F, 0 Q TotalTime= 0h 13.63m RunTime= 0h 13.50m CPUload=154% saphyr1b 2022-11-14 21:40:09,595:INFO: STOP 64: refineB1 103, 14 Thr, 377 R, 453 T, 76 F, 0 Q TotalTime= 0h 13.64m RunTime= 0h 13.51m CPUload=135% bionano1c 2022-11-14 21:40:09,723:INFO: STOP 30: refineB1 30, 28 Thr, 376 R, 453 T, 77 F, 0 Q TotalTime= 0h 13.66m RunTime= 0h 13.48m CPUload=575% bionano2c 2022-11-14 21:40:13,031:INFO: STOP 160: refineB1 230, 14 Thr, 375 R, 453 T, 78 F, 0 Q TotalTime= 0h 13.65m RunTime= 0h 6.01m CPUload=270% saphyr1a 2022-11-14 21:40:13,053:INFO: STOP 155: refineB1 71, 14 Thr, 374 R, 453 T, 79 F, 0 Q TotalTime= 0h 13.66m RunTime= 0h 7.38m CPUload=299% saphyr1a 2022-11-14 21:40:13,633:INFO: STOP 34: refineB1 34, 28 Thr, 373 R, 453 T, 80 F, 0 Q TotalTime= 0h 13.72m RunTime= 0h 13.61m CPUload=464% bionano2d 2022-11-14 21:40:20,833:INFO: STOP 165: refineB1 72, 14 Thr, 372 R, 453 T, 81 F, 0 Q TotalTime= 0h 13.78m RunTime= 0h 4.92m CPUload=301% saphyr1a 2022-11-14 21:40:20,930:INFO: STOP 126: refineB1 216, 14 Thr, 371 R, 453 T, 82 F, 0 Q TotalTime= 0h 13.80m RunTime= 0h 13.62m CPUload=157% saphyr1b 2022-11-14 21:40:21,121:INFO: STOP 99: refineB1 203, 14 Thr, 370 R, 453 T, 83 F, 0 Q TotalTime= 0h 13.82m RunTime= 0h 13.60m CPUload=145% bionano2c 2022-11-14 21:40:21,271:INFO: STOP 78: refineB1 194, 14 Thr, 369 R, 453 T, 84 F, 0 Q TotalTime= 0h 13.83m RunTime= 0h 13.74m CPUload=222% bionano2d 2022-11-14 21:40:21,441:INFO: STOP 31: refineB1 31, 28 Thr, 368 R, 453 T, 85 F, 0 Q TotalTime= 0h 13.85m RunTime= 0h 13.68m CPUload=516% bionano1c 2022-11-14 21:40:29,118:INFO: STOP 49: refineB1 60, 14 Thr, 367 R, 453 T, 86 F, 0 Q TotalTime= 0h 13.97m RunTime= 0h 13.85m CPUload=278% saphyr1c 2022-11-14 21:40:33,524:INFO: STOP 125: refineB1 128, 14 Thr, 366 R, 453 T, 87 F, 0 Q TotalTime= 0h 14.01m RunTime= 0h 13.72m CPUload=144% bionano1c 2022-11-14 21:40:33,683:INFO: STOP 102: refineB1 119, 14 Thr, 365 R, 453 T, 88 F, 0 Q TotalTime= 0h 14.03m RunTime= 0h 13.86m CPUload=146% bionano1c 2022-11-14 21:40:37,302:INFO: STOP 157: refineB1 141, 14 Thr, 364 R, 453 T, 89 F, 0 Q TotalTime= 0h 14.06m RunTime= 0h 7.37m CPUload=307% saphyr1a 2022-11-14 21:40:46,197:INFO: STOP 91: refineB1 114, 14 Thr, 363 R, 453 T, 90 F, 0 Q TotalTime= 0h 14.24m RunTime= 0h 13.99m CPUload=237% bionano2c 2022-11-14 21:40:50,115:INFO: STOP 75: refineB1 193, 14 Thr, 362 R, 453 T, 91 F, 0 Q TotalTime= 0h 14.31m RunTime= 0h 14.15m CPUload=149% saphyr1c 2022-11-14 21:40:53,993:INFO: STOP 58: refineB1 99, 14 Thr, 361 R, 453 T, 92 F, 0 Q TotalTime= 0h 14.39m RunTime= 0h 14.28m CPUload=206% saphyr1c 2022-11-14 21:40:54,026:INFO: STOP 48: refineB1 59, 14 Thr, 360 R, 453 T, 93 F, 0 Q TotalTime= 0h 14.39m RunTime= 0h 14.27m CPUload=242% saphyr1d 2022-11-14 21:40:57,598:INFO: STOP 94: refineB1 115, 14 Thr, 359 R, 453 T, 94 F, 0 Q TotalTime= 0h 14.43m RunTime= 0h 14.20m CPUload=174% bionano1c 2022-11-14 21:40:57,821:INFO: STOP 38: refineB1 45, 14 Thr, 358 R, 453 T, 95 F, 0 Q TotalTime= 0h 14.46m RunTime= 0h 14.33m CPUload=361% bionano1c 2022-11-14 21:41:08,728:INFO: STOP 118: refineB1 213, 14 Thr, 357 R, 453 T, 96 F, 0 Q TotalTime= 0h 14.60m RunTime= 0h 14.43m CPUload=199% bionano1d 2022-11-14 21:41:12,396:INFO: STOP 132: refineB1 219, 14 Thr, 356 R, 453 T, 97 F, 0 Q TotalTime= 0h 14.66m RunTime= 0h 14.29m CPUload=155% bionano1c 2022-11-14 21:41:12,703:INFO: STOP 79: refineB1 109, 14 Thr, 355 R, 453 T, 98 F, 0 Q TotalTime= 0h 14.69m RunTime= 0h 14.49m CPUload=170% bionano1c 2022-11-14 21:41:12,757:INFO: STOP 63: refineB1 62, 14 Thr, 354 R, 453 T, 99 F, 0 Q TotalTime= 0h 14.70m RunTime= 0h 14.55m CPUload=231% bionano2b 2022-11-14 21:41:16,422:INFO: STOP 72: refineB1 107, 14 Thr, 353 R, 453 T, 100 F, 0 Q TotalTime= 0h 14.75m RunTime= 0h 14.58m CPUload=191% bionano1c 2022-11-14 21:41:16,507:INFO: STOP 39: refineB1 46, 14 Thr, 352 R, 453 T, 101 F, 0 Q TotalTime= 0h 14.77m RunTime= 0h 14.56m CPUload=319% saphyr1d 2022-11-14 21:41:19,903:INFO: STOP 113: refineB1 211, 14 Thr, 351 R, 453 T, 102 F, 0 Q TotalTime= 0h 14.79m RunTime= 0h 14.64m CPUload=158% bionano2c 2022-11-14 21:41:23,835:INFO: STOP 55: refineB1 96, 14 Thr, 350 R, 453 T, 103 F, 0 Q TotalTime= 0h 14.88m RunTime= 0h 14.74m CPUload=235% bionano1c 2022-11-14 21:41:27,500:INFO: STOP 111: refineB1 122, 14 Thr, 349 R, 453 T, 104 F, 0 Q TotalTime= 0h 14.92m RunTime= 0h 14.70m CPUload=148% saphyr1d 2022-11-14 21:41:27,565:INFO: STOP 97: refineB1 202, 14 Thr, 348 R, 453 T, 105 F, 0 Q TotalTime= 0h 14.93m RunTime= 0h 14.76m CPUload=173% saphyr1c 2022-11-14 21:41:31,302:INFO: STOP 81: refineB1 110, 14 Thr, 347 R, 453 T, 106 F, 0 Q TotalTime= 0h 15.00m RunTime= 0h 14.75m CPUload=190% saphyr1d 2022-11-14 21:41:35,018:INFO: STOP 45: refineB1 58, 14 Thr, 346 R, 453 T, 107 F, 0 Q TotalTime= 0h 15.07m RunTime= 0h 14.88m CPUload=279% bionano2b 2022-11-14 21:41:38,346:INFO: STOP 127: refineB1 129, 14 Thr, 345 R, 453 T, 108 F, 0 Q TotalTime= 0h 15.09m RunTime= 0h 14.81m CPUload=175% bionano1d 2022-11-14 21:41:42,939:INFO: STOP 27: refineB1 27, 56 Thr, 344 R, 453 T, 109 F, 0 Q TotalTime= 0h 15.22m RunTime= 0h 15.13m CPUload=641% bionano1d 2022-11-14 21:41:46,207:INFO: STOP 156: refineB1 228, 14 Thr, 343 R, 453 T, 110 F, 0 Q TotalTime= 0h 15.21m RunTime= 0h 8.63m CPUload=319% saphyr1a 2022-11-14 21:41:49,844:INFO: STOP 122: refineB1 214, 14 Thr, 342 R, 453 T, 111 F, 0 Q TotalTime= 0h 15.29m RunTime= 0h 15.18m CPUload=153% saphyr1b 2022-11-14 21:41:50,036:INFO: STOP 83: refineB1 196, 14 Thr, 341 R, 453 T, 112 F, 0 Q TotalTime= 0h 15.31m RunTime= 0h 15.15m CPUload=168% bionano1d 2022-11-14 21:41:53,323:INFO: STOP 169: refineB1 73, 14 Thr, 340 R, 453 T, 113 F, 0 Q TotalTime= 0h 15.17m RunTime= 0h 6.04m CPUload=309% saphyr1a 2022-11-14 21:41:53,430:INFO: STOP 119: refineB1 125, 14 Thr, 339 R, 453 T, 114 F, 0 Q TotalTime= 0h 15.35m RunTime= 0h 15.11m CPUload=179% bionano2c 2022-11-14 21:41:53,537:INFO: STOP 90: refineB1 199, 14 Thr, 338 R, 453 T, 115 F, 0 Q TotalTime= 0h 15.36m RunTime= 0h 15.17m CPUload=173% bionano1d 2022-11-14 21:41:57,129:INFO: STOP 85: refineB1 64, 14 Thr, 337 R, 453 T, 116 F, 0 Q TotalTime= 0h 15.43m RunTime= 0h 15.41m CPUload=252% bionano2d 2022-11-14 21:41:57,214:INFO: STOP 28: refineB1 28, 28 Thr, 336 R, 453 T, 117 F, 0 Q TotalTime= 0h 15.45m RunTime= 0h 15.24m CPUload=532% bionano1c 2022-11-14 21:42:04,056:INFO: STOP 112: refineB1 210, 14 Thr, 335 R, 453 T, 118 F, 0 Q TotalTime= 0h 15.53m RunTime= 0h 15.29m CPUload=151% bionano1d 2022-11-14 21:42:04,236:INFO: STOP 52: refineB1 94, 14 Thr, 334 R, 453 T, 119 F, 0 Q TotalTime= 0h 15.56m RunTime= 0h 15.40m CPUload=194% bionano2c 2022-11-14 21:42:04,238:INFO: STOP 29: refineB1 29, 28 Thr, 333 R, 453 T, 120 F, 0 Q TotalTime= 0h 15.57m RunTime= 0h 15.40m CPUload=520% saphyr1d 2022-11-14 21:42:07,709:INFO: STOP 67: refineB1 189, 14 Thr, 332 R, 453 T, 121 F, 0 Q TotalTime= 0h 15.61m RunTime= 0h 15.38m CPUload=167% saphyr1c 2022-11-14 21:42:10,983:INFO: STOP 129: refineB1 130, 14 Thr, 331 R, 453 T, 122 F, 0 Q TotalTime= 0h 15.64m RunTime= 0h 15.30m CPUload=196% bionano1c 2022-11-14 21:42:11,133:INFO: STOP 86: refineB1 112, 14 Thr, 330 R, 453 T, 123 F, 0 Q TotalTime= 0h 15.66m RunTime= 0h 15.41m CPUload=183% bionano1c 2022-11-14 21:42:11,156:INFO: STOP 69: refineB1 191, 14 Thr, 329 R, 453 T, 124 F, 0 Q TotalTime= 0h 15.67m RunTime= 0h 15.58m CPUload=178% bionano2c 2022-11-14 21:42:14,525:INFO: STOP 103: refineB1 205, 14 Thr, 328 R, 453 T, 125 F, 0 Q TotalTime= 0h 15.71m RunTime= 0h 15.50m CPUload=163% saphyr1b 2022-11-14 21:42:22,407:INFO: STOP 101: refineB1 204, 14 Thr, 327 R, 453 T, 126 F, 0 Q TotalTime= 0h 15.84m RunTime= 0h 15.85m CPUload=225% bionano2d 2022-11-14 21:42:55,305:INFO: STOP 107: refineB1 207, 14 Thr, 326 R, 453 T, 127 F, 0 Q TotalTime= 0h 16.39m RunTime= 0h 16.20m CPUload=159% bionano2c 2022-11-14 21:43:02,318:INFO: STOP 163: refineB1 143, 14 Thr, 325 R, 453 T, 128 F, 0 Q TotalTime= 0h 16.48m RunTime= 0h 8.76m CPUload=305% saphyr1a 2022-11-14 21:43:02,467:INFO: STOP 71: refineB1 192, 14 Thr, 324 R, 453 T, 129 F, 0 Q TotalTime= 0h 16.52m RunTime= 0h 16.43m CPUload=141% bionano2b 2022-11-14 21:43:02,479:INFO: STOP 57: refineB1 98, 14 Thr, 323 R, 453 T, 130 F, 0 Q TotalTime= 0h 16.53m RunTime= 0h 16.35m CPUload=191% saphyr1d 2022-11-14 21:43:05,805:INFO: STOP 104: refineB1 206, 14 Thr, 322 R, 453 T, 131 F, 0 Q TotalTime= 0h 16.56m RunTime= 0h 16.42m CPUload=136% saphyr1d 2022-11-14 21:43:05,828:INFO: STOP 88: refineB1 113, 14 Thr, 321 R, 453 T, 132 F, 0 Q TotalTime= 0h 16.57m RunTime= 0h 16.36m CPUload=173% saphyr1d 2022-11-14 21:43:05,840:INFO: STOP 80: refineB1 195, 14 Thr, 320 R, 453 T, 133 F, 0 Q TotalTime= 0h 16.57m RunTime= 0h 16.43m CPUload=171% saphyr1b 2022-11-14 21:43:11,479:INFO: STOP 259: refineB1 281, 14 Thr, 319 R, 453 T, 134 F, 0 Q TotalTime= 0h 15.87m RunTime= 0h 3.51m CPUload=231% saphyr1a 2022-11-14 21:43:32,848:INFO: STOP 87: refineB1 197, 14 Thr, 318 R, 453 T, 135 F, 0 Q TotalTime= 0h 17.02m RunTime= 0h 16.87m CPUload=169% saphyr1b 2022-11-14 21:43:42,828:INFO: STOP 110: refineB1 209, 14 Thr, 317 R, 453 T, 136 F, 0 Q TotalTime= 0h 17.18m RunTime= 0h 17.04m CPUload=198% saphyr1b 2022-11-14 21:43:45,779:INFO: STOP 198: refineB1 157, 14 Thr, 316 R, 453 T, 137 F, 0 Q TotalTime= 0h 16.47m RunTime= 0h 5.61m CPUload=279% bionano1a 2022-11-14 21:43:52,799:INFO: STOP 116: refineB1 212, 14 Thr, 315 R, 453 T, 138 F, 0 Q TotalTime= 0h 17.34m RunTime= 0h 17.12m CPUload=181% saphyr1b 2022-11-14 21:43:52,833:INFO: STOP 68: refineB1 190, 14 Thr, 314 R, 453 T, 139 F, 0 Q TotalTime= 0h 17.36m RunTime= 0h 17.30m CPUload=197% bionano1d 2022-11-14 21:44:15,799:INFO: STOP 162: refineB1 231, 14 Thr, 313 R, 453 T, 140 F, 0 Q TotalTime= 0h 17.70m RunTime= 0h 10.00m CPUload=310% saphyr1a 2022-11-14 21:44:24,906:INFO: STOP 239: refineB1 173, 14 Thr, 312 R, 453 T, 141 F, 0 Q TotalTime= 0h 17.10m RunTime= 0h 4.98m CPUload=271% bionano2a 2022-11-14 21:44:25,684:INFO: STOP 109: refineB1 208, 14 Thr, 311 R, 453 T, 142 F, 0 Q TotalTime= 0h 17.89m RunTime= 0h 17.68m CPUload=185% bionano1c 2022-11-14 21:44:32,199:INFO: STOP 117: refineB1 124, 14 Thr, 310 R, 453 T, 143 F, 0 Q TotalTime= 0h 18.00m RunTime= 0h 17.83m CPUload=179% saphyr1d 2022-11-14 21:44:35,419:INFO: STOP 130: refineB1 218, 14 Thr, 309 R, 453 T, 144 F, 0 Q TotalTime= 0h 18.04m RunTime= 0h 17.84m CPUload=196% saphyr1b 2022-11-14 21:44:41,898:INFO: STOP 123: refineB1 215, 14 Thr, 308 R, 453 T, 145 F, 0 Q TotalTime= 0h 18.15m RunTime= 0h 17.99m CPUload=207% bionano1d 2022-11-14 21:44:45,132:INFO: STOP 121: refineB1 126, 14 Thr, 307 R, 453 T, 146 F, 0 Q TotalTime= 0h 18.21m RunTime= 0h 17.97m CPUload=231% bionano1c 2022-11-14 21:44:57,981:INFO: STOP 167: refineB1 233, 14 Thr, 306 R, 453 T, 147 F, 0 Q TotalTime= 0h 18.30m RunTime= 0h 9.32m CPUload=286% saphyr1a 2022-11-14 21:44:58,004:INFO: STOP 96: refineB1 116, 14 Thr, 305 R, 453 T, 148 F, 0 Q TotalTime= 0h 18.44m RunTime= 0h 18.22m CPUload=219% saphyr1d 2022-11-14 21:45:07,348:INFO: STOP 192: refineB1 75, 14 Thr, 304 R, 453 T, 149 F, 0 Q TotalTime= 0h 17.83m RunTime= 0h 7.58m CPUload=231% bionano1b 2022-11-14 21:45:09,732:INFO: STOP 273: refineB1 295, 14 Thr, 303 R, 453 T, 150 F, 0 Q TotalTime= 0h 17.83m RunTime= 0h 5.34m CPUload=146% bionano2a 2022-11-14 21:45:12,894:INFO: STOP 275: refineB1 297, 14 Thr, 302 R, 453 T, 151 F, 0 Q TotalTime= 0h 17.88m RunTime= 0h 5.38m CPUload=300% saphyr1a 2022-11-14 21:45:22,240:INFO: STOP 291: refineB1 313, 14 Thr, 301 R, 453 T, 152 F, 0 Q TotalTime= 0h 18.03m RunTime= 0h 5.00m CPUload=272% saphyr1a 2022-11-14 21:45:23,449:INFO: STOP 164: refineB1 144, 14 Thr, 300 R, 453 T, 153 F, 0 Q TotalTime= 0h 18.83m RunTime= 0h 10.28m CPUload=223% bionano1d 2022-11-14 21:45:23,451:INFO: STOP 89: refineB1 198, 14 Thr, 299 R, 453 T, 154 F, 0 Q TotalTime= 0h 18.86m RunTime= 0h 18.73m CPUload=184% saphyr1c 2022-11-14 21:45:38,433:INFO: STOP 238: refineB1 264, 14 Thr, 298 R, 453 T, 155 F, 0 Q TotalTime= 0h 18.33m RunTime= 0h 6.27m CPUload=298% saphyr1a 2022-11-14 21:45:41,666:INFO: STOP 227: refineB1 55, 14 Thr, 297 R, 453 T, 156 F, 0 Q TotalTime= 0h 18.39m RunTime= 0h 6.74m CPUload=269% bionano1a 2022-11-14 21:45:48,165:INFO: STOP 200: refineB1 76, 14 Thr, 296 R, 453 T, 157 F, 0 Q TotalTime= 0h 18.51m RunTime= 0h 7.37m CPUload=229% bionano1d 2022-11-14 21:45:53,561:INFO: STOP 285: refineB1 307, 14 Thr, 295 R, 453 T, 158 F, 0 Q TotalTime= 0h 18.56m RunTime= 0h 5.64m CPUload=277% saphyr1a 2022-11-14 21:45:53,710:INFO: STOP 268: refineB1 290, 14 Thr, 294 R, 453 T, 159 F, 0 Q TotalTime= 0h 18.57m RunTime= 0h 6.13m CPUload=160% bionano2a 2022-11-14 21:46:00,822:INFO: STOP 168: refineB1 145, 14 Thr, 293 R, 453 T, 160 F, 0 Q TotalTime= 0h 19.31m RunTime= 0h 10.34m CPUload=244% bionano1b 2022-11-14 21:46:06,518:INFO: STOP 219: refineB1 257, 14 Thr, 292 R, 453 T, 161 F, 0 Q TotalTime= 0h 18.81m RunTime= 0h 7.19m CPUload=294% saphyr1a 2022-11-14 21:46:18,097:INFO: STOP 295: refineB1 317, 14 Thr, 291 R, 453 T, 162 F, 0 Q TotalTime= 0h 18.96m RunTime= 0h 5.65m CPUload=266% saphyr1a 2022-11-14 21:46:24,957:INFO: STOP 213: refineB1 79, 14 Thr, 290 R, 453 T, 163 F, 0 Q TotalTime= 0h 19.12m RunTime= 0h 7.76m CPUload=218% bionano1a 2022-11-14 21:46:27,342:INFO: STOP 284: refineB1 306, 14 Thr, 289 R, 453 T, 164 F, 0 Q TotalTime= 0h 19.12m RunTime= 0h 6.23m CPUload=285% saphyr1a 2022-11-14 21:46:30,527:INFO: STOP 266: refineB1 288, 14 Thr, 288 R, 453 T, 165 F, 0 Q TotalTime= 0h 19.18m RunTime= 0h 6.73m CPUload=181% bionano2a 2022-11-14 21:46:39,073:INFO: STOP 324: refineB1 346, 14 Thr, 287 R, 453 T, 166 F, 0 Q TotalTime= 0h 19.30m RunTime= 0h 4.69m CPUload=280% saphyr1a 2022-11-14 21:46:39,117:INFO: STOP 319: refineB1 341, 14 Thr, 286 R, 453 T, 167 F, 0 Q TotalTime= 0h 19.30m RunTime= 0h 4.85m CPUload=288% saphyr1a 2022-11-14 21:46:54,778:INFO: STOP 249: refineB1 271, 14 Thr, 285 R, 453 T, 168 F, 0 Q TotalTime= 0h 19.60m RunTime= 0h 7.24m CPUload=179% bionano2a 2022-11-14 21:47:00,732:INFO: STOP 252: refineB1 274, 14 Thr, 284 R, 453 T, 169 F, 0 Q TotalTime= 0h 19.69m RunTime= 0h 7.36m CPUload=165% bionano2a 2022-11-14 21:47:02,856:INFO: STOP 345: refineB1 367, 14 Thr, 283 R, 453 T, 170 F, 0 Q TotalTime= 0h 19.69m RunTime= 0h 3.81m CPUload=276% saphyr1a 2022-11-14 21:47:03,853:INFO: STOP 237: refineB1 82, 14 Thr, 282 R, 453 T, 171 F, 0 Q TotalTime= 0h 19.75m RunTime= 0h 7.72m CPUload=275% bionano1b 2022-11-14 21:47:03,918:INFO: STOP 230: refineB1 81, 14 Thr, 281 R, 453 T, 172 F, 0 Q TotalTime= 0h 19.76m RunTime= 0h 8.13m CPUload=217% bionano1a 2022-11-14 21:47:04,357:INFO: STOP 181: refineB1 240, 14 Thr, 280 R, 453 T, 173 F, 0 Q TotalTime= 0h 19.79m RunTime= 0h 10.10m CPUload=241% bionano1b 2022-11-14 21:47:04,559:INFO: STOP 18: refineB1 18, 56 Thr, 279 R, 453 T, 174 F, 0 Q TotalTime= 0h 20.58m RunTime= 0h 20.51m CPUload=852% bionano1d 2022-11-14 21:47:07,365:INFO: STOP 173: refineB1 147, 14 Thr, 278 R, 453 T, 175 F, 0 Q TotalTime= 0h 20.23m RunTime= 0h 10.83m CPUload=164% bionano2c 2022-11-14 21:47:09,611:INFO: STOP 251: refineB1 273, 14 Thr, 277 R, 453 T, 176 F, 0 Q TotalTime= 0h 19.84m RunTime= 0h 7.48m CPUload=190% bionano2a 2022-11-14 21:47:19,328:INFO: STOP 254: refineB1 276, 14 Thr, 276 R, 453 T, 177 F, 0 Q TotalTime= 0h 20.00m RunTime= 0h 7.67m CPUload=187% bionano2a 2022-11-14 21:47:20,057:INFO: STOP 26: refineB1 26, 56 Thr, 275 R, 453 T, 178 F, 0 Q TotalTime= 0h 20.83m RunTime= 0h 20.76m CPUload=588% bionano1b 2022-11-14 21:47:28,373:INFO: STOP 247: refineB1 269, 14 Thr, 274 R, 453 T, 179 F, 0 Q TotalTime= 0h 20.16m RunTime= 0h 7.76m CPUload=192% bionano2a 2022-11-14 21:47:28,827:INFO: STOP 193: refineB1 154, 14 Thr, 273 R, 453 T, 180 F, 0 Q TotalTime= 0h 20.19m RunTime= 0h 9.60m CPUload=248% bionano2d 2022-11-14 21:47:31,212:INFO: STOP 253: refineB1 275, 14 Thr, 272 R, 453 T, 181 F, 0 Q TotalTime= 0h 20.20m RunTime= 0h 7.87m CPUload=213% bionano2a 2022-11-14 21:47:34,567:INFO: STOP 190: refineB1 153, 14 Thr, 271 R, 453 T, 182 F, 0 Q TotalTime= 0h 20.29m RunTime= 0h 10.31m CPUload=261% bionano1b 2022-11-14 21:47:36,972:INFO: STOP 244: refineB1 84, 14 Thr, 270 R, 453 T, 183 F, 0 Q TotalTime= 0h 20.30m RunTime= 0h 7.92m CPUload=320% bionano1d 2022-11-14 21:47:37,344:INFO: STOP 199: refineB1 248, 14 Thr, 269 R, 453 T, 184 F, 0 Q TotalTime= 0h 20.33m RunTime= 0h 9.37m CPUload=219% bionano2d 2022-11-14 21:47:40,520:INFO: STOP 282: refineB1 304, 14 Thr, 268 R, 453 T, 185 F, 0 Q TotalTime= 0h 20.34m RunTime= 0h 7.44m CPUload=198% bionano2d 2022-11-14 21:47:40,722:INFO: STOP 257: refineB1 279, 14 Thr, 267 R, 453 T, 186 F, 0 Q TotalTime= 0h 20.36m RunTime= 0h 7.97m CPUload=188% bionano2a 2022-11-14 21:47:40,724:INFO: STOP 256: refineB1 278, 14 Thr, 266 R, 453 T, 187 F, 0 Q TotalTime= 0h 20.36m RunTime= 0h 7.96m CPUload=203% bionano2a 2022-11-14 21:47:41,208:INFO: STOP 188: refineB1 152, 14 Thr, 265 R, 453 T, 188 F, 0 Q TotalTime= 0h 20.40m RunTime= 0h 10.33m CPUload=234% bionano1d 2022-11-14 21:47:41,263:INFO: STOP 182: refineB1 150, 14 Thr, 264 R, 453 T, 189 F, 0 Q TotalTime= 0h 20.40m RunTime= 0h 10.62m CPUload=232% saphyr1b 2022-11-14 21:47:46,177:INFO: STOP 270: refineB1 292, 14 Thr, 263 R, 453 T, 190 F, 0 Q TotalTime= 0h 20.44m RunTime= 0h 7.99m CPUload=196% bionano2a 2022-11-14 21:47:46,914:INFO: STOP 25: refineB1 25, 56 Thr, 262 R, 453 T, 191 F, 0 Q TotalTime= 0h 21.28m RunTime= 0h 21.21m CPUload=697% saphyr1c 2022-11-14 21:47:48,818:INFO: STOP 286: refineB1 308, 14 Thr, 261 R, 453 T, 192 F, 0 Q TotalTime= 0h 20.48m RunTime= 0h 7.45m CPUload=138% saphyr1b 2022-11-14 21:47:48,873:INFO: STOP 277: refineB1 299, 14 Thr, 260 R, 453 T, 193 F, 0 Q TotalTime= 0h 20.48m RunTime= 0h 7.68m CPUload=345% saphyr1a 2022-11-14 21:47:48,949:INFO: STOP 264: refineB1 286, 14 Thr, 259 R, 453 T, 194 F, 0 Q TotalTime= 0h 20.49m RunTime= 0h 8.01m CPUload=191% bionano2a 2022-11-14 21:47:52,248:INFO: STOP 183: refineB1 241, 14 Thr, 258 R, 453 T, 195 F, 0 Q TotalTime= 0h 20.59m RunTime= 0h 10.84m CPUload=232% saphyr1b 2022-11-14 21:47:53,544:INFO: STOP 359: refineB1 381, 14 Thr, 257 R, 453 T, 196 F, 0 Q TotalTime= 0h 20.49m RunTime= 0h 2.89m CPUload=276% saphyr1a 2022-11-14 21:47:53,715:INFO: STOP 341: refineB1 363, 14 Thr, 256 R, 453 T, 197 F, 0 Q TotalTime= 0h 20.53m RunTime= 0h 4.79m CPUload=320% saphyr1a 2022-11-14 21:47:54,547:INFO: STOP 233: refineB1 170, 14 Thr, 255 R, 453 T, 198 F, 0 Q TotalTime= 0h 20.60m RunTime= 0h 8.98m CPUload=233% bionano1a 2022-11-14 21:47:57,828:INFO: STOP 279: refineB1 301, 14 Thr, 254 R, 453 T, 199 F, 0 Q TotalTime= 0h 20.63m RunTime= 0h 7.74m CPUload=161% saphyr1b 2022-11-14 21:48:00,518:INFO: STOP 274: refineB1 296, 14 Thr, 253 R, 453 T, 200 F, 0 Q TotalTime= 0h 20.68m RunTime= 0h 8.21m CPUload=196% bionano2a 2022-11-14 21:48:00,541:INFO: STOP 269: refineB1 291, 14 Thr, 252 R, 453 T, 201 F, 0 Q TotalTime= 0h 20.68m RunTime= 0h 8.20m CPUload=193% bionano2a 2022-11-14 21:48:00,585:INFO: STOP 261: refineB1 283, 14 Thr, 251 R, 453 T, 202 F, 0 Q TotalTime= 0h 20.69m RunTime= 0h 8.23m CPUload=214% bionano2a 2022-11-14 21:48:00,902:INFO: STOP 212: refineB1 162, 14 Thr, 250 R, 453 T, 203 F, 0 Q TotalTime= 0h 20.72m RunTime= 0h 9.38m CPUload=192% bionano1a 2022-11-14 21:48:04,438:INFO: STOP 223: refineB1 166, 14 Thr, 249 R, 453 T, 204 F, 0 Q TotalTime= 0h 20.77m RunTime= 0h 9.15m CPUload=172% bionano1a 2022-11-14 21:48:04,724:INFO: STOP 184: refineB1 151, 14 Thr, 248 R, 453 T, 205 F, 0 Q TotalTime= 0h 20.79m RunTime= 0h 11.02m CPUload=235% bionano1b 2022-11-14 21:48:08,456:INFO: STOP 22: refineB1 22, 56 Thr, 247 R, 453 T, 206 F, 0 Q TotalTime= 0h 21.64m RunTime= 0h 21.58m CPUload=672% bionano2d 2022-11-14 21:48:11,202:INFO: STOP 255: refineB1 277, 14 Thr, 246 R, 453 T, 207 F, 0 Q TotalTime= 0h 20.87m RunTime= 0h 8.50m CPUload=189% bionano2a 2022-11-14 21:48:11,814:INFO: STOP 20: refineB1 20, 56 Thr, 245 R, 453 T, 208 F, 0 Q TotalTime= 0h 21.70m RunTime= 0h 21.64m CPUload=706% saphyr1d 2022-11-14 21:48:16,327:INFO: STOP 260: refineB1 282, 14 Thr, 244 R, 453 T, 209 F, 0 Q TotalTime= 0h 20.95m RunTime= 0h 8.50m CPUload=226% bionano1b 2022-11-14 21:48:16,665:INFO: STOP 206: refineB1 160, 14 Thr, 243 R, 453 T, 210 F, 0 Q TotalTime= 0h 20.98m RunTime= 0h 9.60m CPUload=191% bionano1a 2022-11-14 21:48:21,681:INFO: STOP 216: refineB1 255, 14 Thr, 242 R, 453 T, 211 F, 0 Q TotalTime= 0h 21.06m RunTime= 0h 9.69m CPUload=197% bionano1a 2022-11-14 21:48:21,767:INFO: STOP 204: refineB1 159, 14 Thr, 241 R, 453 T, 212 F, 0 Q TotalTime= 0h 21.07m RunTime= 0h 9.74m CPUload=235% bionano1c 2022-11-14 21:48:21,937:INFO: STOP 175: refineB1 237, 14 Thr, 240 R, 453 T, 213 F, 0 Q TotalTime= 0h 21.36m RunTime= 0h 11.78m CPUload=180% bionano2c 2022-11-14 21:48:27,431:INFO: STOP 15: refineB1 15, 56 Thr, 239 R, 453 T, 214 F, 0 Q TotalTime= 0h 21.96m RunTime= 0h 21.85m CPUload=883% saphyr1b 2022-11-14 21:48:29,363:INFO: STOP 246: refineB1 268, 14 Thr, 238 R, 453 T, 215 F, 0 Q TotalTime= 0h 21.18m RunTime= 0h 8.83m CPUload=218% bionano2a 2022-11-14 21:48:29,502:INFO: STOP 225: refineB1 167, 14 Thr, 237 R, 453 T, 216 F, 0 Q TotalTime= 0h 21.19m RunTime= 0h 9.58m CPUload=195% bionano1a 2022-11-14 21:48:32,162:INFO: STOP 197: refineB1 156, 14 Thr, 236 R, 453 T, 217 F, 0 Q TotalTime= 0h 21.24m RunTime= 0h 10.38m CPUload=218% bionano1d 2022-11-14 21:48:34,390:INFO: STOP 236: refineB1 172, 14 Thr, 235 R, 453 T, 218 F, 0 Q TotalTime= 0h 21.26m RunTime= 0h 9.24m CPUload=208% bionano1d 2022-11-14 21:48:34,486:INFO: STOP 221: refineB1 80, 14 Thr, 234 R, 453 T, 219 F, 0 Q TotalTime= 0h 21.27m RunTime= 0h 9.66m CPUload=251% bionano1a 2022-11-14 21:48:34,688:INFO: STOP 186: refineB1 243, 14 Thr, 233 R, 453 T, 220 F, 0 Q TotalTime= 0h 21.29m RunTime= 0h 11.35m CPUload=206% saphyr1b 2022-11-14 21:48:36,024:INFO: STOP 351: refineB1 373, 14 Thr, 232 R, 453 T, 221 F, 0 Q TotalTime= 0h 21.24m RunTime= 0h 4.29m CPUload=345% saphyr1a 2022-11-14 21:48:36,761:INFO: STOP 250: refineB1 272, 14 Thr, 231 R, 453 T, 222 F, 0 Q TotalTime= 0h 21.30m RunTime= 0h 8.95m CPUload=203% bionano2a 2022-11-14 21:48:39,472:INFO: STOP 201: refineB1 249, 14 Thr, 230 R, 453 T, 223 F, 0 Q TotalTime= 0h 21.36m RunTime= 0h 10.30m CPUload=238% bionano1b 2022-11-14 21:48:42,079:INFO: STOP 21: refineB1 21, 56 Thr, 229 R, 453 T, 224 F, 0 Q TotalTime= 0h 22.20m RunTime= 0h 22.07m CPUload=761% bionano2c 2022-11-14 21:48:44,016:INFO: STOP 248: refineB1 270, 14 Thr, 228 R, 453 T, 225 F, 0 Q TotalTime= 0h 21.42m RunTime= 0h 9.06m CPUload=200% bionano2a 2022-11-14 21:48:47,973:INFO: STOP 362: refineB1 384, 14 Thr, 227 R, 453 T, 226 F, 0 Q TotalTime= 0h 21.40m RunTime= 0h 3.56m CPUload=343% saphyr1a 2022-11-14 21:48:48,731:INFO: STOP 272: refineB1 294, 14 Thr, 226 R, 453 T, 227 F, 0 Q TotalTime= 0h 21.48m RunTime= 0h 9.03m CPUload=221% bionano2a 2022-11-14 21:48:51,106:INFO: STOP 271: refineB1 293, 14 Thr, 225 R, 453 T, 228 F, 0 Q TotalTime= 0h 21.52m RunTime= 0h 9.07m CPUload=207% bionano2a 2022-11-14 21:48:51,151:INFO: STOP 258: refineB1 280, 14 Thr, 224 R, 453 T, 229 F, 0 Q TotalTime= 0h 21.53m RunTime= 0h 9.19m CPUload=242% bionano2a 2022-11-14 21:48:53,358:INFO: STOP 292: refineB1 314, 14 Thr, 223 R, 453 T, 230 F, 0 Q TotalTime= 0h 21.55m RunTime= 0h 8.31m CPUload=147% saphyr1c 2022-11-14 21:48:53,591:INFO: STOP 229: refineB1 261, 14 Thr, 222 R, 453 T, 231 F, 0 Q TotalTime= 0h 21.59m RunTime= 0h 10.00m CPUload=164% bionano1a 2022-11-14 21:48:53,762:INFO: STOP 196: refineB1 247, 14 Thr, 221 R, 453 T, 232 F, 0 Q TotalTime= 0h 21.61m RunTime= 0h 10.83m CPUload=194% saphyr1b 2022-11-14 21:48:53,921:INFO: STOP 24: refineB1 24, 56 Thr, 220 R, 453 T, 233 F, 0 Q TotalTime= 0h 22.40m RunTime= 0h 22.31m CPUload=762% saphyr1b 2022-11-14 21:48:55,951:INFO: STOP 220: refineB1 165, 14 Thr, 219 R, 453 T, 234 F, 0 Q TotalTime= 0h 21.63m RunTime= 0h 10.01m CPUload=207% bionano1a 2022-11-14 21:48:58,862:INFO: STOP 208: refineB1 78, 14 Thr, 218 R, 453 T, 235 F, 0 Q TotalTime= 0h 21.68m RunTime= 0h 10.31m CPUload=251% bionano1a 2022-11-14 21:48:58,927:INFO: STOP 189: refineB1 244, 14 Thr, 217 R, 453 T, 236 F, 0 Q TotalTime= 0h 21.70m RunTime= 0h 11.64m CPUload=217% saphyr1b 2022-11-14 21:49:00,317:INFO: STOP 342: refineB1 364, 14 Thr, 216 R, 453 T, 237 F, 0 Q TotalTime= 0h 21.64m RunTime= 0h 5.91m CPUload=227% saphyr1b 2022-11-14 21:49:00,466:INFO: STOP 326: refineB1 348, 14 Thr, 215 R, 453 T, 238 F, 0 Q TotalTime= 0h 21.65m RunTime= 0h 6.96m CPUload=133% bionano1c 2022-11-14 21:49:00,877:INFO: STOP 267: refineB1 289, 14 Thr, 214 R, 453 T, 239 F, 0 Q TotalTime= 0h 21.69m RunTime= 0h 9.20m CPUload=226% bionano2a 2022-11-14 21:49:01,285:INFO: STOP 224: refineB1 259, 14 Thr, 213 R, 453 T, 240 F, 0 Q TotalTime= 0h 21.72m RunTime= 0h 10.09m CPUload=202% bionano1a 2022-11-14 21:49:01,298:INFO: STOP 218: refineB1 164, 14 Thr, 212 R, 453 T, 241 F, 0 Q TotalTime= 0h 21.72m RunTime= 0h 10.21m CPUload=214% bionano2c 2022-11-14 21:49:01,352:INFO: STOP 209: refineB1 161, 14 Thr, 211 R, 453 T, 242 F, 0 Q TotalTime= 0h 21.73m RunTime= 0h 10.39m CPUload=221% bionano1a 2022-11-14 21:49:02,846:INFO: STOP 336: refineB1 358, 14 Thr, 210 R, 453 T, 243 F, 0 Q TotalTime= 0h 21.69m RunTime= 0h 6.75m CPUload=204% saphyr1b 2022-11-14 21:49:07,783:INFO: STOP 262: refineB1 284, 14 Thr, 209 R, 453 T, 244 F, 0 Q TotalTime= 0h 21.81m RunTime= 0h 9.37m CPUload=198% bionano2a 2022-11-14 21:49:09,875:INFO: STOP 289: refineB1 311, 14 Thr, 208 R, 453 T, 245 F, 0 Q TotalTime= 0h 21.83m RunTime= 0h 8.77m CPUload=156% bionano1c 2022-11-14 21:49:12,134:INFO: STOP 265: refineB1 287, 14 Thr, 207 R, 453 T, 246 F, 0 Q TotalTime= 0h 21.88m RunTime= 0h 9.42m CPUload=213% bionano2a 2022-11-14 21:49:13,806:INFO: STOP 337: refineB1 359, 14 Thr, 206 R, 453 T, 247 F, 0 Q TotalTime= 0h 21.87m RunTime= 0h 6.82m CPUload=202% bionano2d 2022-11-14 21:49:14,291:INFO: STOP 276: refineB1 298, 14 Thr, 205 R, 453 T, 248 F, 0 Q TotalTime= 0h 21.91m RunTime= 0h 9.25m CPUload=209% saphyr1b 2022-11-14 21:49:15,710:INFO: STOP 367: refineB1 389, 14 Thr, 204 R, 453 T, 249 F, 0 Q TotalTime= 0h 21.86m RunTime= 0h 3.55m CPUload=324% saphyr1a 2022-11-14 21:49:16,394:INFO: STOP 283: refineB1 305, 14 Thr, 203 R, 453 T, 250 F, 0 Q TotalTime= 0h 21.94m RunTime= 0h 9.09m CPUload=206% bionano2d 2022-11-14 21:49:16,533:INFO: STOP 228: refineB1 168, 14 Thr, 202 R, 453 T, 251 F, 0 Q TotalTime= 0h 21.97m RunTime= 0h 10.36m CPUload=201% bionano1a 2022-11-14 21:49:16,598:INFO: STOP 210: refineB1 252, 14 Thr, 201 R, 453 T, 252 F, 0 Q TotalTime= 0h 21.98m RunTime= 0h 10.65m CPUload=192% bionano1a 2022-11-14 21:49:18,742:INFO: STOP 195: refineB1 155, 14 Thr, 200 R, 453 T, 253 F, 0 Q TotalTime= 0h 22.02m RunTime= 0h 11.36m CPUload=238% bionano2d 2022-11-14 21:49:20,532:INFO: STOP 298: refineB1 320, 14 Thr, 199 R, 453 T, 254 F, 0 Q TotalTime= 0h 22.00m RunTime= 0h 8.42m CPUload=159% saphyr1c 2022-11-14 21:49:20,859:INFO: STOP 187: refineB1 54, 14 Thr, 198 R, 453 T, 255 F, 0 Q TotalTime= 0h 22.06m RunTime= 0h 12.02m CPUload=245% bionano2b 2022-11-14 21:49:24,701:INFO: STOP 296: refineB1 318, 14 Thr, 197 R, 453 T, 256 F, 0 Q TotalTime= 0h 22.07m RunTime= 0h 8.48m CPUload=132% bionano2c 2022-11-14 21:49:24,871:INFO: STOP 232: refineB1 262, 14 Thr, 196 R, 453 T, 257 F, 0 Q TotalTime= 0h 22.11m RunTime= 0h 10.50m CPUload=180% bionano1a 2022-11-14 21:49:24,884:INFO: STOP 226: refineB1 260, 14 Thr, 195 R, 453 T, 258 F, 0 Q TotalTime= 0h 22.11m RunTime= 0h 10.50m CPUload=180% bionano1a 2022-11-14 21:49:24,885:INFO: STOP 222: refineB1 258, 14 Thr, 194 R, 453 T, 259 F, 0 Q TotalTime= 0h 22.11m RunTime= 0h 10.53m CPUload=196% bionano1a 2022-11-14 21:49:27,419:INFO: STOP 349: refineB1 371, 14 Thr, 193 R, 453 T, 260 F, 0 Q TotalTime= 0h 22.09m RunTime= 0h 5.46m CPUload=190% saphyr1b 2022-11-14 21:49:27,683:INFO: STOP 315: refineB1 337, 14 Thr, 192 R, 453 T, 261 F, 0 Q TotalTime= 0h 22.11m RunTime= 0h 7.71m CPUload=126% bionano1d 2022-11-14 21:49:28,000:INFO: STOP 240: refineB1 83, 14 Thr, 191 R, 453 T, 262 F, 0 Q TotalTime= 0h 22.15m RunTime= 0h 9.98m CPUload=293% bionano1b 2022-11-14 21:49:28,149:INFO: STOP 179: refineB1 149, 14 Thr, 190 R, 453 T, 263 F, 0 Q TotalTime= 0h 22.32m RunTime= 0h 12.53m CPUload=209% saphyr1c 2022-11-14 21:49:30,215:INFO: STOP 170: refineB1 234, 14 Thr, 189 R, 453 T, 264 F, 0 Q TotalTime= 0h 22.64m RunTime= 0h 13.52m CPUload=211% saphyr1c 2022-11-14 21:49:35,226:INFO: STOP 369: refineB1 391, 14 Thr, 188 R, 453 T, 265 F, 0 Q TotalTime= 0h 22.18m RunTime= 0h 3.68m CPUload=396% saphyr1a 2022-11-14 21:49:37,987:INFO: STOP 214: refineB1 254, 14 Thr, 187 R, 453 T, 266 F, 0 Q TotalTime= 0h 22.33m RunTime= 0h 10.96m CPUload=204% bionano1a 2022-11-14 21:49:39,762:INFO: STOP 294: refineB1 316, 14 Thr, 186 R, 453 T, 267 F, 0 Q TotalTime= 0h 22.32m RunTime= 0h 9.13m CPUload=124% bionano1c 2022-11-14 21:49:43,108:INFO: STOP 364: refineB1 386, 14 Thr, 185 R, 453 T, 268 F, 0 Q TotalTime= 0h 22.32m RunTime= 0h 4.33m CPUload=415% saphyr1a 2022-11-14 21:49:43,341:INFO: STOP 332: refineB1 354, 14 Thr, 184 R, 453 T, 269 F, 0 Q TotalTime= 0h 22.37m RunTime= 0h 7.53m CPUload=154% saphyr1c 2022-11-14 21:49:43,951:INFO: STOP 174: refineB1 236, 14 Thr, 183 R, 453 T, 270 F, 0 Q TotalTime= 0h 22.76m RunTime= 0h 13.47m CPUload=208% bionano1c 2022-11-14 21:49:45,547:INFO: STOP 300: refineB1 322, 14 Thr, 182 R, 453 T, 271 F, 0 Q TotalTime= 0h 22.42m RunTime= 0h 8.71m CPUload=142% bionano1c 2022-11-14 21:49:45,559:INFO: STOP 297: refineB1 319, 14 Thr, 181 R, 453 T, 272 F, 0 Q TotalTime= 0h 22.42m RunTime= 0h 8.87m CPUload=214% saphyr1c 2022-11-14 21:49:47,662:INFO: STOP 205: refineB1 250, 14 Thr, 180 R, 453 T, 273 F, 0 Q TotalTime= 0h 22.50m RunTime= 0h 11.15m CPUload=196% bionano1a 2022-11-14 21:49:48,755:INFO: STOP 373: refineB1 395, 14 Thr, 179 R, 453 T, 274 F, 0 Q TotalTime= 0h 22.41m RunTime= 0h 3.48m CPUload=377% saphyr1a 2022-11-14 21:49:49,471:INFO: STOP 235: refineB1 171, 14 Thr, 178 R, 453 T, 275 F, 0 Q TotalTime= 0h 22.51m RunTime= 0h 10.61m CPUload=258% saphyr1c 2022-11-14 21:49:49,620:INFO: STOP 172: refineB1 235, 14 Thr, 177 R, 453 T, 276 F, 0 Q TotalTime= 0h 22.96m RunTime= 0h 13.57m CPUload=223% bionano2c 2022-11-14 21:49:49,632:INFO: STOP 23: refineB1 23, 56 Thr, 176 R, 453 T, 277 F, 0 Q TotalTime= 0h 23.33m RunTime= 0h 23.28m CPUload=666% bionano2b 2022-11-14 21:49:52,458:INFO: STOP 372: refineB1 394, 14 Thr, 175 R, 453 T, 278 F, 0 Q TotalTime= 0h 22.47m RunTime= 0h 3.75m CPUload=396% saphyr1a 2022-11-14 21:49:54,916:INFO: STOP 281: refineB1 303, 14 Thr, 174 R, 453 T, 279 F, 0 Q TotalTime= 0h 22.58m RunTime= 0h 9.72m CPUload=150% bionano2c 2022-11-14 21:49:54,949:INFO: STOP 245: refineB1 267, 14 Thr, 173 R, 453 T, 280 F, 0 Q TotalTime= 0h 22.60m RunTime= 0h 10.19m CPUload=223% bionano2c 2022-11-14 21:49:56,796:INFO: STOP 234: refineB1 263, 14 Thr, 172 R, 453 T, 281 F, 0 Q TotalTime= 0h 22.64m RunTime= 0h 10.92m CPUload=197% bionano2c 2022-11-14 21:49:58,246:INFO: STOP 327: refineB1 349, 14 Thr, 171 R, 453 T, 282 F, 0 Q TotalTime= 0h 22.62m RunTime= 0h 7.97m CPUload=210% bionano2d 2022-11-14 21:49:58,877:INFO: STOP 453: refineB1 453, 14 Thr, 170 R, 453 T, 283 F, 0 Q TotalTime= 0h 22.53m RunTime= 0h 1.38m CPUload=234% bionano1a 2022-11-14 21:50:00,306:INFO: STOP 287: refineB1 309, 14 Thr, 169 R, 453 T, 284 F, 0 Q TotalTime= 0h 22.67m RunTime= 0h 9.64m CPUload=243% bionano2c 2022-11-14 21:50:00,329:INFO: STOP 263: refineB1 285, 14 Thr, 168 R, 453 T, 285 F, 0 Q TotalTime= 0h 22.68m RunTime= 0h 10.19m CPUload=241% bionano2a 2022-11-14 21:50:00,362:INFO: STOP 231: refineB1 169, 14 Thr, 167 R, 453 T, 286 F, 0 Q TotalTime= 0h 22.70m RunTime= 0h 11.10m CPUload=206% bionano1a 2022-11-14 21:50:01,413:INFO: STOP 378: refineB1 400, 14 Thr, 166 R, 453 T, 287 F, 0 Q TotalTime= 0h 22.61m RunTime= 0h 3.35m CPUload=391% saphyr1a 2022-11-14 21:50:02,266:INFO: STOP 16: refineB1 16, 56 Thr, 165 R, 453 T, 288 F, 0 Q TotalTime= 0h 23.54m RunTime= 0h 23.52m CPUload=765% saphyr1c 2022-11-14 21:50:04,881:INFO: STOP 377: refineB1 399, 14 Thr, 164 R, 453 T, 289 F, 0 Q TotalTime= 0h 22.67m RunTime= 0h 3.40m CPUload=402% saphyr1a 2022-11-14 21:50:05,103:INFO: STOP 346: refineB1 368, 14 Thr, 163 R, 453 T, 290 F, 0 Q TotalTime= 0h 22.72m RunTime= 0h 6.46m CPUload=226% saphyr1b 2022-11-14 21:50:06,856:INFO: STOP 338: refineB1 360, 14 Thr, 162 R, 453 T, 291 F, 0 Q TotalTime= 0h 22.76m RunTime= 0h 7.20m CPUload=147% bionano2c 2022-11-14 21:50:07,287:INFO: STOP 207: refineB1 251, 14 Thr, 161 R, 453 T, 292 F, 0 Q TotalTime= 0h 22.83m RunTime= 0h 11.47m CPUload=214% bionano1a 2022-11-14 21:50:10,247:INFO: STOP 334: refineB1 356, 14 Thr, 160 R, 453 T, 293 F, 0 Q TotalTime= 0h 22.81m RunTime= 0h 7.91m CPUload=206% bionano2c 2022-11-14 21:50:10,333:INFO: STOP 321: refineB1 343, 14 Thr, 159 R, 453 T, 294 F, 0 Q TotalTime= 0h 22.82m RunTime= 0h 8.25m CPUload=233% saphyr1b 2022-11-14 21:50:10,533:INFO: STOP 293: refineB1 315, 14 Thr, 158 R, 453 T, 295 F, 0 Q TotalTime= 0h 22.84m RunTime= 0h 9.64m CPUload=215% bionano1c 2022-11-14 21:50:11,226:INFO: STOP 417: refineB1 439, 14 Thr, 157 R, 453 T, 296 F, 0 Q TotalTime= 0h 22.76m RunTime= 0h 2.35m CPUload=411% saphyr1a 2022-11-14 21:50:12,160:INFO: STOP 301: refineB1 323, 14 Thr, 156 R, 453 T, 297 F, 0 Q TotalTime= 0h 22.86m RunTime= 0h 9.18m CPUload=179% bionano1c 2022-11-14 21:50:12,298:INFO: STOP 191: refineB1 245, 14 Thr, 155 R, 453 T, 298 F, 0 Q TotalTime= 0h 22.92m RunTime= 0h 12.92m CPUload=211% bionano1d 2022-11-14 21:50:13,210:INFO: STOP 382: refineB1 404, 14 Thr, 154 R, 453 T, 299 F, 0 Q TotalTime= 0h 22.81m RunTime= 0h 3.13m CPUload=431% saphyr1a 2022-11-14 21:50:13,390:INFO: STOP 355: refineB1 377, 14 Thr, 153 R, 453 T, 300 F, 0 Q TotalTime= 0h 22.86m RunTime= 0h 5.57m CPUload=198% saphyr1b 2022-11-14 21:50:14,435:INFO: STOP 419: refineB1 441, 14 Thr, 152 R, 453 T, 301 F, 0 Q TotalTime= 0h 22.81m RunTime= 0h 2.34m CPUload=454% saphyr1a 2022-11-14 21:50:15,386:INFO: STOP 280: refineB1 302, 14 Thr, 151 R, 453 T, 302 F, 0 Q TotalTime= 0h 22.92m RunTime= 0h 10.05m CPUload=237% bionano2c 2022-11-14 21:50:17,073:INFO: STOP 180: refineB1 239, 14 Thr, 150 R, 453 T, 303 F, 0 Q TotalTime= 0h 23.04m RunTime= 0h 13.34m CPUload=222% saphyr1c 2022-11-14 21:50:17,116:INFO: STOP 19: refineB1 19, 56 Thr, 149 R, 453 T, 304 F, 0 Q TotalTime= 0h 23.79m RunTime= 0h 23.67m CPUload=795% bionano1c 2022-11-14 21:50:18,274:INFO: STOP 328: refineB1 350, 14 Thr, 148 R, 453 T, 305 F, 0 Q TotalTime= 0h 22.95m RunTime= 0h 8.22m CPUload=238% bionano2c 2022-11-14 21:50:18,568:INFO: STOP 215: refineB1 163, 14 Thr, 147 R, 453 T, 306 F, 0 Q TotalTime= 0h 23.01m RunTime= 0h 11.65m CPUload=219% bionano1a 2022-11-14 21:50:19,517:INFO: STOP 375: refineB1 397, 14 Thr, 146 R, 453 T, 307 F, 0 Q TotalTime= 0h 22.92m RunTime= 0h 3.82m CPUload=538% saphyr1a 2022-11-14 21:50:22,130:INFO: STOP 421: refineB1 443, 14 Thr, 145 R, 453 T, 308 F, 0 Q TotalTime= 0h 22.94m RunTime= 0h 2.42m CPUload=482% saphyr1a 2022-11-14 21:50:24,472:INFO: STOP 308: refineB1 330, 14 Thr, 144 R, 453 T, 309 F, 0 Q TotalTime= 0h 23.06m RunTime= 0h 9.01m CPUload=231% bionano2c 2022-11-14 21:50:24,495:INFO: STOP 305: refineB1 327, 14 Thr, 143 R, 453 T, 310 F, 0 Q TotalTime= 0h 23.06m RunTime= 0h 9.18m CPUload=172% bionano1c 2022-11-14 21:50:24,538:INFO: STOP 290: refineB1 312, 14 Thr, 142 R, 453 T, 311 F, 0 Q TotalTime= 0h 23.07m RunTime= 0h 10.04m CPUload=223% bionano2d 2022-11-14 21:50:26,016:INFO: STOP 288: refineB1 310, 14 Thr, 141 R, 453 T, 312 F, 0 Q TotalTime= 0h 23.10m RunTime= 0h 10.10m CPUload=183% bionano1c 2022-11-14 21:50:27,484:INFO: STOP 333: refineB1 355, 14 Thr, 140 R, 453 T, 313 F, 0 Q TotalTime= 0h 23.10m RunTime= 0h 8.17m CPUload=207% bionano1c 2022-11-14 21:50:27,766:INFO: STOP 211: refineB1 253, 14 Thr, 139 R, 453 T, 314 F, 0 Q TotalTime= 0h 23.17m RunTime= 0h 11.81m CPUload=215% bionano1a 2022-11-14 21:50:33,626:INFO: STOP 178: refineB1 238, 14 Thr, 138 R, 453 T, 315 F, 0 Q TotalTime= 0h 23.45m RunTime= 0h 13.73m CPUload=244% bionano2d 2022-11-14 21:50:34,842:INFO: STOP 318: refineB1 340, 14 Thr, 137 R, 453 T, 316 F, 0 Q TotalTime= 0h 23.23m RunTime= 0h 8.85m CPUload=172% bionano1d 2022-11-14 21:50:34,992:INFO: STOP 278: refineB1 300, 14 Thr, 136 R, 453 T, 317 F, 0 Q TotalTime= 0h 23.25m RunTime= 0h 10.38m CPUload=242% bionano1c 2022-11-14 21:50:36,290:INFO: STOP 323: refineB1 345, 14 Thr, 135 R, 453 T, 318 F, 0 Q TotalTime= 0h 23.25m RunTime= 0h 8.59m CPUload=283% bionano2c 2022-11-14 21:50:37,551:INFO: STOP 361: refineB1 383, 14 Thr, 134 R, 453 T, 319 F, 0 Q TotalTime= 0h 23.23m RunTime= 0h 5.45m CPUload=165% bionano2a 2022-11-14 21:50:39,536:INFO: STOP 12: refineB1 12, 56 Thr, 133 R, 453 T, 320 F, 0 Q TotalTime= 0h 24.17m RunTime= 0h 24.05m CPUload=852% bionano2c 2022-11-14 21:50:39,605:INFO: STOP 5: refineB1 5, 56 Thr, 132 R, 453 T, 321 F, 0 Q TotalTime= 0h 24.17m RunTime= 0h 24.15m CPUload=1151% saphyr1a 2022-11-14 21:50:40,870:INFO: STOP 217: refineB1 256, 14 Thr, 131 R, 453 T, 322 F, 0 Q TotalTime= 0h 23.38m RunTime= 0h 12.07m CPUload=202% bionano1a 2022-11-14 21:50:43,286:INFO: STOP 365: refineB1 387, 14 Thr, 130 R, 453 T, 323 F, 0 Q TotalTime= 0h 23.32m RunTime= 0h 5.31m CPUload=307% saphyr1c 2022-11-14 21:50:43,549:INFO: STOP 314: refineB1 336, 14 Thr, 129 R, 453 T, 324 F, 0 Q TotalTime= 0h 23.38m RunTime= 0h 9.06m CPUload=163% bionano1d 2022-11-14 21:50:43,715:INFO: STOP 194: refineB1 246, 14 Thr, 128 R, 453 T, 325 F, 0 Q TotalTime= 0h 23.44m RunTime= 0h 12.84m CPUload=236% bionano1d 2022-11-14 21:50:44,997:INFO: STOP 309: refineB1 331, 14 Thr, 127 R, 453 T, 326 F, 0 Q TotalTime= 0h 23.40m RunTime= 0h 9.32m CPUload=219% bionano1c 2022-11-14 21:50:44,999:INFO: STOP 307: refineB1 329, 14 Thr, 126 R, 453 T, 327 F, 0 Q TotalTime= 0h 23.40m RunTime= 0h 9.42m CPUload=197% bionano1c 2022-11-14 21:50:45,893:INFO: STOP 390: refineB1 412, 14 Thr, 125 R, 453 T, 328 F, 0 Q TotalTime= 0h 23.35m RunTime= 0h 3.61m CPUload=354% bionano2c 2022-11-14 21:50:49,115:INFO: STOP 304: refineB1 326, 14 Thr, 124 R, 453 T, 329 F, 0 Q TotalTime= 0h 23.48m RunTime= 0h 9.60m CPUload=198% bionano1c 2022-11-14 21:50:49,216:INFO: STOP 176: refineB1 74, 14 Thr, 123 R, 453 T, 330 F, 0 Q TotalTime= 0h 23.74m RunTime= 0h 14.00m CPUload=176% bionano2b 2022-11-14 21:50:50,223:INFO: STOP 352: refineB1 374, 14 Thr, 122 R, 453 T, 331 F, 0 Q TotalTime= 0h 23.47m RunTime= 0h 6.38m CPUload=190% bionano2a 2022-11-14 21:50:50,302:INFO: STOP 335: refineB1 357, 14 Thr, 121 R, 453 T, 332 F, 0 Q TotalTime= 0h 23.48m RunTime= 0h 8.56m CPUload=205% bionano1c 2022-11-14 21:50:50,337:INFO: STOP 325: refineB1 347, 14 Thr, 120 R, 453 T, 333 F, 0 Q TotalTime= 0h 23.49m RunTime= 0h 8.74m CPUload=199% bionano1c 2022-11-14 21:50:51,548:INFO: STOP 348: refineB1 370, 14 Thr, 119 R, 453 T, 334 F, 0 Q TotalTime= 0h 23.50m RunTime= 0h 7.11m CPUload=228% bionano1a 2022-11-14 21:50:51,813:INFO: STOP 185: refineB1 242, 14 Thr, 118 R, 453 T, 335 F, 0 Q TotalTime= 0h 23.58m RunTime= 0h 13.71m CPUload=275% bionano1b 2022-11-14 21:50:52,997:INFO: STOP 311: refineB1 333, 14 Thr, 117 R, 453 T, 336 F, 0 Q TotalTime= 0h 23.54m RunTime= 0h 9.36m CPUload=250% saphyr1c 2022-11-14 21:50:56,819:INFO: STOP 317: refineB1 339, 14 Thr, 116 R, 453 T, 337 F, 0 Q TotalTime= 0h 23.60m RunTime= 0h 9.25m CPUload=129% bionano1d 2022-11-14 21:51:00,731:INFO: STOP 299: refineB1 321, 14 Thr, 115 R, 453 T, 338 F, 0 Q TotalTime= 0h 23.67m RunTime= 0h 10.09m CPUload=140% saphyr1d 2022-11-14 21:51:05,482:INFO: STOP 374: refineB1 396, 14 Thr, 114 R, 453 T, 339 F, 0 Q TotalTime= 0h 23.68m RunTime= 0h 4.64m CPUload=240% bionano1a 2022-11-14 21:51:10,597:INFO: STOP 353: refineB1 375, 14 Thr, 113 R, 453 T, 340 F, 0 Q TotalTime= 0h 23.81m RunTime= 0h 6.70m CPUload=233% bionano1c 2022-11-14 21:51:13,334:INFO: STOP 177: refineB1 148, 14 Thr, 112 R, 453 T, 341 F, 0 Q TotalTime= 0h 24.12m RunTime= 0h 14.41m CPUload=174% bionano2b 2022-11-14 21:51:13,404:INFO: STOP 9: refineB1 9, 56 Thr, 111 R, 453 T, 342 F, 0 Q TotalTime= 0h 24.73m RunTime= 0h 24.68m CPUload=949% saphyr1c 2022-11-14 21:51:15,767:INFO: STOP 241: refineB1 265, 14 Thr, 110 R, 453 T, 343 F, 0 Q TotalTime= 0h 23.95m RunTime= 0h 11.56m CPUload=146% saphyr1d 2022-11-14 21:51:16,290:INFO: STOP 412: refineB1 434, 14 Thr, 109 R, 453 T, 344 F, 0 Q TotalTime= 0h 23.84m RunTime= 0h 3.45m CPUload=401% saphyr1c 2022-11-14 21:51:16,848:INFO: STOP 329: refineB1 351, 14 Thr, 108 R, 453 T, 345 F, 0 Q TotalTime= 0h 23.93m RunTime= 0h 9.19m CPUload=165% bionano1d 2022-11-14 21:51:17,969:INFO: STOP 347: refineB1 369, 14 Thr, 107 R, 453 T, 346 F, 0 Q TotalTime= 0h 23.94m RunTime= 0h 7.55m CPUload=323% saphyr1b 2022-11-14 21:51:18,161:INFO: STOP 202: refineB1 158, 14 Thr, 106 R, 453 T, 347 F, 0 Q TotalTime= 0h 24.01m RunTime= 0h 12.95m CPUload=261% bionano2d 2022-11-14 21:51:20,212:INFO: STOP 370: refineB1 392, 14 Thr, 105 R, 453 T, 348 F, 0 Q TotalTime= 0h 23.93m RunTime= 0h 5.39m CPUload=251% bionano2a 2022-11-14 21:51:21,544:INFO: STOP 322: refineB1 344, 14 Thr, 104 R, 453 T, 349 F, 0 Q TotalTime= 0h 24.01m RunTime= 0h 9.41m CPUload=178% bionano1d 2022-11-14 21:51:22,156:INFO: STOP 413: refineB1 435, 14 Thr, 103 R, 453 T, 350 F, 0 Q TotalTime= 0h 23.94m RunTime= 0h 3.56m CPUload=464% saphyr1c 2022-11-14 21:51:22,182:INFO: STOP 409: refineB1 431, 14 Thr, 102 R, 453 T, 351 F, 0 Q TotalTime= 0h 23.94m RunTime= 0h 3.57m CPUload=429% saphyr1c 2022-11-14 21:51:24,787:INFO: STOP 366: refineB1 388, 14 Thr, 101 R, 453 T, 352 F, 0 Q TotalTime= 0h 24.01m RunTime= 0h 5.73m CPUload=255% bionano1a 2022-11-14 21:51:24,824:INFO: STOP 357: refineB1 379, 14 Thr, 100 R, 453 T, 353 F, 0 Q TotalTime= 0h 24.04m RunTime= 0h 6.58m CPUload=344% bionano1c 2022-11-14 21:51:28,326:INFO: STOP 302: refineB1 324, 14 Thr, 99 R, 453 T, 354 F, 0 Q TotalTime= 0h 24.13m RunTime= 0h 10.29m CPUload=165% bionano1d 2022-11-14 21:51:31,339:INFO: STOP 381: refineB1 403, 14 Thr, 98 R, 453 T, 355 F, 0 Q TotalTime= 0h 24.11m RunTime= 0h 4.45m CPUload=309% bionano1a 2022-11-14 21:51:31,640:INFO: STOP 17: refineB1 17, 56 Thr, 97 R, 453 T, 356 F, 0 Q TotalTime= 0h 25.03m RunTime= 0h 25.02m CPUload=701% bionano1b 2022-11-14 21:51:31,864:INFO: STOP 439: refineB1 87, 14 Thr, 96 R, 453 T, 357 F, 0 Q TotalTime= 0h 24.09m RunTime= 0h 3.24m CPUload=481% bionano1a 2022-11-14 21:51:32,896:INFO: STOP 442: refineB1 56, 14 Thr, 95 R, 453 T, 358 F, 0 Q TotalTime= 0h 24.10m RunTime= 0h 3.11m CPUload=673% bionano1c 2022-11-14 21:51:36,763:INFO: STOP 339: refineB1 361, 14 Thr, 94 R, 453 T, 359 F, 0 Q TotalTime= 0h 24.25m RunTime= 0h 8.57m CPUload=126% bionano2b 2022-11-14 21:51:38,842:INFO: STOP 330: refineB1 352, 14 Thr, 93 R, 453 T, 360 F, 0 Q TotalTime= 0h 24.29m RunTime= 0h 9.48m CPUload=144% saphyr1d 2022-11-14 21:51:39,144:INFO: STOP 441: refineB1 182, 14 Thr, 92 R, 453 T, 361 F, 0 Q TotalTime= 0h 24.21m RunTime= 0h 3.25m CPUload=634% bionano2c 2022-11-14 21:51:46,238:INFO: STOP 443: refineB1 183, 14 Thr, 91 R, 453 T, 362 F, 0 Q TotalTime= 0h 24.32m RunTime= 0h 3.36m CPUload=445% bionano1a 2022-11-14 21:51:46,496:INFO: STOP 411: refineB1 433, 14 Thr, 90 R, 453 T, 363 F, 0 Q TotalTime= 0h 24.35m RunTime= 0h 3.96m CPUload=520% saphyr1c 2022-11-14 21:51:46,941:INFO: STOP 331: refineB1 353, 14 Thr, 89 R, 453 T, 364 F, 0 Q TotalTime= 0h 24.43m RunTime= 0h 9.65m CPUload=170% saphyr1d 2022-11-14 21:51:48,421:INFO: STOP 420: refineB1 442, 14 Thr, 88 R, 453 T, 365 F, 0 Q TotalTime= 0h 24.37m RunTime= 0h 3.89m CPUload=433% bionano1a 2022-11-14 21:51:51,390:INFO: STOP 410: refineB1 432, 14 Thr, 87 R, 453 T, 366 F, 0 Q TotalTime= 0h 24.43m RunTime= 0h 4.05m CPUload=518% saphyr1c 2022-11-14 21:51:55,594:INFO: STOP 356: refineB1 378, 14 Thr, 86 R, 453 T, 367 F, 0 Q TotalTime= 0h 24.56m RunTime= 0h 7.20m CPUload=184% bionano1d 2022-11-14 21:51:57,578:INFO: STOP 313: refineB1 335, 14 Thr, 85 R, 453 T, 368 F, 0 Q TotalTime= 0h 24.61m RunTime= 0h 10.37m CPUload=173% bionano2b 2022-11-14 21:51:58,543:INFO: STOP 306: refineB1 328, 14 Thr, 84 R, 453 T, 369 F, 0 Q TotalTime= 0h 24.63m RunTime= 0h 10.67m CPUload=170% saphyr1d 2022-11-14 21:51:59,629:INFO: STOP 449: refineB1 187, 14 Thr, 83 R, 453 T, 370 F, 0 Q TotalTime= 0h 24.54m RunTime= 0h 3.46m CPUload=544% bionano1a 2022-11-14 21:52:00,979:INFO: STOP 396: refineB1 418, 14 Thr, 82 R, 453 T, 371 F, 0 Q TotalTime= 0h 24.60m RunTime= 0h 4.70m CPUload=295% bionano1b 2022-11-14 21:52:01,655:INFO: STOP 426: refineB1 448, 14 Thr, 81 R, 453 T, 372 F, 0 Q TotalTime= 0h 24.59m RunTime= 0h 3.98m CPUload=517% bionano1a 2022-11-14 21:52:02,044:INFO: STOP 371: refineB1 393, 14 Thr, 80 R, 453 T, 373 F, 0 Q TotalTime= 0h 24.63m RunTime= 0h 5.99m CPUload=285% bionano1b 2022-11-14 21:52:02,722:INFO: STOP 400: refineB1 422, 14 Thr, 79 R, 453 T, 374 F, 0 Q TotalTime= 0h 24.62m RunTime= 0h 4.49m CPUload=245% bionano2a 2022-11-14 21:52:05,148:INFO: STOP 428: refineB1 450, 14 Thr, 78 R, 453 T, 375 F, 0 Q TotalTime= 0h 24.65m RunTime= 0h 3.96m CPUload=490% bionano1a 2022-11-14 21:52:07,970:INFO: STOP 393: refineB1 415, 14 Thr, 77 R, 453 T, 376 F, 0 Q TotalTime= 0h 24.71m RunTime= 0h 4.82m CPUload=297% bionano1b 2022-11-14 21:52:08,250:INFO: STOP 303: refineB1 325, 14 Thr, 76 R, 453 T, 377 F, 0 Q TotalTime= 0h 24.79m RunTime= 0h 10.96m CPUload=156% bionano2b 2022-11-14 21:52:13,808:INFO: STOP 395: refineB1 417, 14 Thr, 75 R, 453 T, 378 F, 0 Q TotalTime= 0h 24.81m RunTime= 0h 4.91m CPUload=260% bionano1b 2022-11-14 21:52:14,943:INFO: STOP 166: refineB1 232, 14 Thr, 74 R, 453 T, 379 F, 0 Q TotalTime= 0h 25.68m RunTime= 0h 16.59m CPUload=183% saphyr1d 2022-11-14 21:52:21,320:INFO: STOP 376: refineB1 398, 14 Thr, 73 R, 453 T, 380 F, 0 Q TotalTime= 0h 24.95m RunTime= 0h 5.82m CPUload=239% bionano2a 2022-11-14 21:52:23,074:INFO: STOP 310: refineB1 332, 14 Thr, 72 R, 453 T, 381 F, 0 Q TotalTime= 0h 25.04m RunTime= 0h 10.98m CPUload=152% saphyr1d 2022-11-14 21:52:24,561:INFO: STOP 360: refineB1 382, 14 Thr, 71 R, 453 T, 382 F, 0 Q TotalTime= 0h 25.01m RunTime= 0h 7.23m CPUload=294% bionano1b 2022-11-14 21:52:25,468:INFO: STOP 14: refineB1 14, 56 Thr, 70 R, 453 T, 383 F, 0 Q TotalTime= 0h 25.93m RunTime= 0h 25.88m CPUload=852% bionano2b 2022-11-14 21:52:31,573:INFO: STOP 316: refineB1 338, 14 Thr, 69 R, 453 T, 384 F, 0 Q TotalTime= 0h 25.18m RunTime= 0h 10.80m CPUload=230% bionano1d 2022-11-14 21:52:31,852:INFO: STOP 431: refineB1 85, 14 Thr, 68 R, 453 T, 385 F, 0 Q TotalTime= 0h 25.09m RunTime= 0h 4.37m CPUload=371% bionano2d 2022-11-14 21:52:38,354:INFO: STOP 242: refineB1 266, 14 Thr, 67 R, 453 T, 386 F, 0 Q TotalTime= 0h 25.33m RunTime= 0h 13.00m CPUload=172% saphyr1d 2022-11-14 21:52:44,937:INFO: STOP 344: refineB1 366, 14 Thr, 66 R, 453 T, 387 F, 0 Q TotalTime= 0h 25.39m RunTime= 0h 9.57m CPUload=123% saphyr1d 2022-11-14 21:52:45,777:INFO: STOP 6: refineB1 6, 56 Thr, 65 R, 453 T, 388 F, 0 Q TotalTime= 0h 26.27m RunTime= 0h 26.23m CPUload=1029% bionano2b 2022-11-14 21:52:46,444:INFO: STOP 13: refineB1 13, 56 Thr, 64 R, 453 T, 389 F, 0 Q TotalTime= 0h 26.28m RunTime= 0h 26.24m CPUload=747% bionano2d 2022-11-14 21:52:49,231:INFO: STOP 312: refineB1 334, 14 Thr, 63 R, 453 T, 390 F, 0 Q TotalTime= 0h 25.47m RunTime= 0h 11.30m CPUload=181% saphyr1d 2022-11-14 21:52:49,650:INFO: STOP 402: refineB1 424, 14 Thr, 62 R, 453 T, 391 F, 0 Q TotalTime= 0h 25.41m RunTime= 0h 5.22m CPUload=303% bionano1b 2022-11-14 21:52:49,917:INFO: STOP 243: refineB1 174, 14 Thr, 61 R, 453 T, 392 F, 0 Q TotalTime= 0h 25.52m RunTime= 0h 13.19m CPUload=263% saphyr1d 2022-11-14 21:52:54,433:INFO: STOP 388: refineB1 410, 14 Thr, 60 R, 453 T, 393 F, 0 Q TotalTime= 0h 25.49m RunTime= 0h 5.81m CPUload=344% bionano1b 2022-11-14 21:52:54,589:INFO: STOP 320: refineB1 342, 14 Thr, 59 R, 453 T, 394 F, 0 Q TotalTime= 0h 25.56m RunTime= 0h 11.06m CPUload=235% bionano1d 2022-11-14 21:52:54,615:INFO: STOP 8: refineB1 8, 56 Thr, 58 R, 453 T, 395 F, 0 Q TotalTime= 0h 26.42m RunTime= 0h 26.36m CPUload=1059% bionano2b 2022-11-14 21:52:57,644:INFO: STOP 387: refineB1 409, 14 Thr, 57 R, 453 T, 396 F, 0 Q TotalTime= 0h 25.55m RunTime= 0h 5.81m CPUload=168% bionano1d 2022-11-14 21:52:59,227:INFO: STOP 434: refineB1 177, 14 Thr, 56 R, 453 T, 397 F, 0 Q TotalTime= 0h 25.55m RunTime= 0h 4.80m CPUload=327% bionano2a 2022-11-14 21:53:00,265:INFO: STOP 343: refineB1 365, 14 Thr, 55 R, 453 T, 398 F, 0 Q TotalTime= 0h 25.64m RunTime= 0h 9.90m CPUload=180% saphyr1d 2022-11-14 21:53:01,138:INFO: STOP 423: refineB1 445, 14 Thr, 54 R, 453 T, 399 F, 0 Q TotalTime= 0h 25.59m RunTime= 0h 5.01m CPUload=286% bionano2a 2022-11-14 21:53:02,529:INFO: STOP 389: refineB1 411, 14 Thr, 53 R, 453 T, 400 F, 0 Q TotalTime= 0h 25.63m RunTime= 0h 5.94m CPUload=376% bionano1b 2022-11-14 21:53:03,679:INFO: STOP 392: refineB1 414, 14 Thr, 52 R, 453 T, 401 F, 0 Q TotalTime= 0h 25.64m RunTime= 0h 5.73m CPUload=352% bionano1b 2022-11-14 21:53:05,079:INFO: STOP 444: refineB1 88, 14 Thr, 51 R, 453 T, 402 F, 0 Q TotalTime= 0h 25.64m RunTime= 0h 4.56m CPUload=477% saphyr1b 2022-11-14 21:53:05,602:INFO: STOP 447: refineB1 89, 14 Thr, 50 R, 453 T, 403 F, 0 Q TotalTime= 0h 25.65m RunTime= 0h 4.58m CPUload=475% saphyr1b 2022-11-14 21:53:06,114:INFO: STOP 452: refineB1 91, 14 Thr, 49 R, 453 T, 404 F, 0 Q TotalTime= 0h 25.65m RunTime= 0h 4.47m CPUload=529% saphyr1b 2022-11-14 21:53:07,956:INFO: STOP 415: refineB1 437, 14 Thr, 48 R, 453 T, 405 F, 0 Q TotalTime= 0h 25.70m RunTime= 0h 5.27m CPUload=356% saphyr1b 2022-11-14 21:53:08,556:INFO: STOP 403: refineB1 425, 14 Thr, 47 R, 453 T, 406 F, 0 Q TotalTime= 0h 25.72m RunTime= 0h 5.50m CPUload=298% bionano2d 2022-11-14 21:53:08,901:INFO: STOP 433: refineB1 176, 14 Thr, 46 R, 453 T, 407 F, 0 Q TotalTime= 0h 25.71m RunTime= 0h 5.00m CPUload=357% bionano2d 2022-11-14 21:53:10,632:INFO: STOP 394: refineB1 416, 14 Thr, 45 R, 453 T, 408 F, 0 Q TotalTime= 0h 25.76m RunTime= 0h 5.87m CPUload=431% bionano1b 2022-11-14 21:53:11,531:INFO: STOP 408: refineB1 430, 14 Thr, 44 R, 453 T, 409 F, 0 Q TotalTime= 0h 25.77m RunTime= 0h 5.50m CPUload=349% bionano2d 2022-11-14 21:53:11,556:INFO: STOP 405: refineB1 427, 14 Thr, 43 R, 453 T, 410 F, 0 Q TotalTime= 0h 25.77m RunTime= 0h 5.51m CPUload=300% bionano2a 2022-11-14 21:53:11,925:INFO: STOP 429: refineB1 451, 14 Thr, 42 R, 453 T, 411 F, 0 Q TotalTime= 0h 25.76m RunTime= 0h 5.05m CPUload=351% bionano2d 2022-11-14 21:53:12,182:INFO: STOP 358: refineB1 380, 14 Thr, 41 R, 453 T, 412 F, 0 Q TotalTime= 0h 25.81m RunTime= 0h 8.19m CPUload=161% saphyr1d 2022-11-14 21:53:12,759:INFO: STOP 440: refineB1 181, 14 Thr, 40 R, 453 T, 413 F, 0 Q TotalTime= 0h 25.77m RunTime= 0h 4.92m CPUload=555% bionano1b 2022-11-14 21:53:13,397:INFO: STOP 398: refineB1 420, 14 Thr, 39 R, 453 T, 414 F, 0 Q TotalTime= 0h 25.80m RunTime= 0h 5.76m CPUload=328% bionano2a 2022-11-14 21:53:13,511:INFO: STOP 354: refineB1 376, 14 Thr, 38 R, 453 T, 415 F, 0 Q TotalTime= 0h 25.86m RunTime= 0h 8.56m CPUload=191% saphyr1d 2022-11-14 21:53:13,668:INFO: STOP 432: refineB1 175, 14 Thr, 37 R, 453 T, 416 F, 0 Q TotalTime= 0h 25.79m RunTime= 0h 5.08m CPUload=408% bionano2d 2022-11-14 21:53:14,301:INFO: STOP 379: refineB1 401, 14 Thr, 36 R, 453 T, 417 F, 0 Q TotalTime= 0h 25.83m RunTime= 0h 6.32m CPUload=281% bionano2a 2022-11-14 21:53:14,470:INFO: STOP 435: refineB1 86, 14 Thr, 35 R, 453 T, 418 F, 0 Q TotalTime= 0h 25.80m RunTime= 0h 5.01m CPUload=269% saphyr1d 2022-11-14 21:53:17,941:INFO: STOP 427: refineB1 449, 14 Thr, 34 R, 453 T, 419 F, 0 Q TotalTime= 0h 25.86m RunTime= 0h 5.21m CPUload=418% bionano1b 2022-11-14 21:53:18,318:INFO: STOP 425: refineB1 447, 14 Thr, 33 R, 453 T, 420 F, 0 Q TotalTime= 0h 25.87m RunTime= 0h 5.25m CPUload=278% bionano2a 2022-11-14 21:53:19,340:INFO: STOP 448: refineB1 186, 14 Thr, 32 R, 453 T, 421 F, 0 Q TotalTime= 0h 25.87m RunTime= 0h 4.83m CPUload=372% bionano2a 2022-11-14 21:53:19,819:INFO: STOP 407: refineB1 429, 14 Thr, 31 R, 453 T, 422 F, 0 Q TotalTime= 0h 25.91m RunTime= 0h 5.61m CPUload=362% saphyr1b 2022-11-14 21:53:19,856:INFO: STOP 399: refineB1 421, 14 Thr, 30 R, 453 T, 423 F, 0 Q TotalTime= 0h 25.91m RunTime= 0h 5.81m CPUload=346% bionano2d 2022-11-14 21:53:20,035:INFO: STOP 446: refineB1 185, 14 Thr, 29 R, 453 T, 424 F, 0 Q TotalTime= 0h 25.89m RunTime= 0h 4.82m CPUload=484% saphyr1b 2022-11-14 21:53:21,576:INFO: STOP 340: refineB1 362, 14 Thr, 28 R, 453 T, 425 F, 0 Q TotalTime= 0h 26.00m RunTime= 0h 10.32m CPUload=189% saphyr1d 2022-11-14 21:53:21,901:INFO: STOP 10: refineB1 10, 56 Thr, 27 R, 453 T, 426 F, 0 Q TotalTime= 0h 26.87m RunTime= 0h 26.85m CPUload=780% bionano1b 2022-11-14 21:53:22,015:INFO: STOP 418: refineB1 440, 14 Thr, 26 R, 453 T, 427 F, 0 Q TotalTime= 0h 25.94m RunTime= 0h 5.45m CPUload=370% saphyr1b 2022-11-14 21:53:23,520:INFO: STOP 391: refineB1 413, 14 Thr, 25 R, 453 T, 428 F, 0 Q TotalTime= 0h 25.98m RunTime= 0h 6.25m CPUload=271% bionano2a 2022-11-14 21:53:26,515:INFO: STOP 406: refineB1 428, 14 Thr, 24 R, 453 T, 429 F, 0 Q TotalTime= 0h 26.02m RunTime= 0h 5.78m CPUload=327% bionano2a 2022-11-14 21:53:27,544:INFO: STOP 430: refineB1 452, 14 Thr, 23 R, 453 T, 430 F, 0 Q TotalTime= 0h 26.02m RunTime= 0h 5.30m CPUload=410% bionano2d 2022-11-14 21:53:27,580:INFO: STOP 414: refineB1 436, 14 Thr, 22 R, 453 T, 431 F, 0 Q TotalTime= 0h 26.03m RunTime= 0h 5.67m CPUload=333% bionano2a 2022-11-14 21:53:28,614:INFO: STOP 380: refineB1 402, 14 Thr, 21 R, 453 T, 432 F, 0 Q TotalTime= 0h 26.07m RunTime= 0h 6.43m CPUload=292% bionano2a 2022-11-14 21:53:30,068:INFO: STOP 445: refineB1 184, 14 Thr, 20 R, 453 T, 433 F, 0 Q TotalTime= 0h 26.05m RunTime= 0h 5.00m CPUload=485% saphyr1b 2022-11-14 21:53:33,601:INFO: STOP 424: refineB1 446, 14 Thr, 19 R, 453 T, 434 F, 0 Q TotalTime= 0h 26.13m RunTime= 0h 5.51m CPUload=319% bionano2a 2022-11-14 21:53:38,806:INFO: STOP 416: refineB1 438, 14 Thr, 18 R, 453 T, 435 F, 0 Q TotalTime= 0h 26.22m RunTime= 0h 5.82m CPUload=342% bionano2a 2022-11-14 21:53:43,807:INFO: STOP 397: refineB1 419, 14 Thr, 17 R, 453 T, 436 F, 0 Q TotalTime= 0h 26.31m RunTime= 0h 6.38m CPUload=407% bionano2a 2022-11-14 21:53:47,002:INFO: STOP 386: refineB1 408, 14 Thr, 16 R, 453 T, 437 F, 0 Q TotalTime= 0h 26.37m RunTime= 0h 6.63m CPUload=186% bionano1d 2022-11-14 21:53:47,794:INFO: STOP 7: refineB1 7, 56 Thr, 15 R, 453 T, 438 F, 0 Q TotalTime= 0h 27.31m RunTime= 0h 27.27m CPUload=988% bionano2d 2022-11-14 21:53:52,170:INFO: STOP 404: refineB1 426, 14 Thr, 14 R, 453 T, 439 F, 0 Q TotalTime= 0h 26.45m RunTime= 0h 6.16m CPUload=223% bionano1d 2022-11-14 21:53:54,470:INFO: STOP 437: refineB1 179, 14 Thr, 13 R, 453 T, 440 F, 0 Q TotalTime= 0h 26.46m RunTime= 0h 5.66m CPUload=380% saphyr1d 2022-11-14 21:53:55,625:INFO: STOP 436: refineB1 178, 14 Thr, 12 R, 453 T, 441 F, 0 Q TotalTime= 0h 26.48m RunTime= 0h 5.71m CPUload=334% saphyr1d 2022-11-14 21:54:00,380:INFO: STOP 450: refineB1 90, 14 Thr, 11 R, 453 T, 442 F, 0 Q TotalTime= 0h 26.56m RunTime= 0h 5.38m CPUload=348% bionano1d 2022-11-14 21:54:06,111:INFO: STOP 422: refineB1 444, 14 Thr, 10 R, 453 T, 443 F, 0 Q TotalTime= 0h 26.67m RunTime= 0h 6.12m CPUload=518% saphyr1b 2022-11-14 21:54:08,474:INFO: STOP 383: refineB1 405, 14 Thr, 9 R, 453 T, 444 F, 0 Q TotalTime= 0h 26.73m RunTime= 0h 7.01m CPUload=212% bionano1d 2022-11-14 21:54:08,477:INFO: STOP 368: refineB1 390, 14 Thr, 8 R, 453 T, 445 F, 0 Q TotalTime= 0h 26.74m RunTime= 0h 8.32m CPUload=235% bionano1d 2022-11-14 21:54:08,481:INFO: STOP 363: refineB1 385, 14 Thr, 7 R, 453 T, 446 F, 0 Q TotalTime= 0h 26.74m RunTime= 0h 8.71m CPUload=254% bionano1d 2022-11-14 21:54:08,484:INFO: STOP 350: refineB1 372, 14 Thr, 6 R, 453 T, 447 F, 0 Q TotalTime= 0h 26.78m RunTime= 0h 10.20m CPUload=274% bionano1d 2022-11-14 21:54:10,611:INFO: STOP 11: refineB1 11, 56 Thr, 5 R, 453 T, 448 F, 0 Q TotalTime= 0h 27.68m RunTime= 0h 27.64m CPUload=1024% saphyr1d 2022-11-14 21:54:11,621:INFO: STOP 438: refineB1 180, 14 Thr, 4 R, 453 T, 449 F, 0 Q TotalTime= 0h 26.75m RunTime= 0h 5.95m CPUload=400% saphyr1d 2022-11-14 21:54:14,697:INFO: STOP 384: refineB1 406, 14 Thr, 3 R, 453 T, 450 F, 0 Q TotalTime= 0h 26.83m RunTime= 0h 7.10m CPUload=288% bionano1d 2022-11-14 21:54:33,796:INFO: STOP 451: refineB1 188, 14 Thr, 2 R, 453 T, 451 F, 0 Q TotalTime= 0h 27.11m RunTime= 0h 5.93m CPUload=400% bionano1d 2022-11-14 21:54:36,832:INFO: STOP 401: refineB1 423, 14 Thr, 1 R, 453 T, 452 F, 0 Q TotalTime= 0h 27.19m RunTime= 0h 6.97m CPUload=390% bionano1d 2022-11-14 21:54:52,882:INFO: STOP 385: refineB1 407, 14 Thr, 0 R, 453 T, 453 F, 0 Q TotalTime= 0h 27.47m RunTime= 0h 7.75m CPUload=377% bionano1d 2022-11-14 21:54:52,884:INFO: Finished Multi-Threaded Process: refineB1 2022-11-14 21:54:53,182:INFO: refineB1 1 completed in: 796.8s Result Found refineB1 2 completed in: 788.7s Result Found refineB1 3 completed in: 743.3s Result Found refineB1 4 completed in: 730.7s Result Found refineB1 5 completed in: 1450.3s Result Found refineB1 6 completed in: 1576.4s Result Found refineB1 7 completed in: 1638.4s Result Found refineB1 8 completed in: 1585.2s Result Found refineB1 9 completed in: 1483.9s Result Found refineB1 10 completed in: 1612.4s Result Found refineB1 11 completed in: 1661.1s Result Found refineB1 12 completed in: 1450.0s Result Found refineB1 13 completed in: 1576.9s Result Found refineB1 14 completed in: 1555.9s Result Found refineB1 15 completed in: 1317.8s Result Found refineB1 16 completed in: 1412.6s Result Found refineB1 17 completed in: 1501.9s Result Found refineB1 18 completed in: 1234.8s Result Found refineB1 19 completed in: 1427.4s Result Found refineB1 20 completed in: 1302.0s Result Found refineB1 21 completed in: 1332.3s Result Found refineB1 22 completed in: 1298.6s Result Found refineB1 23 completed in: 1399.8s Result Found refineB1 24 completed in: 1344.0s Result Found refineB1 25 completed in: 1277.0s Result Found refineB1 26 completed in: 1250.1s Result Found refineB1 27 completed in: 912.9s Result Found refineB1 28 completed in: 927.2s Result Found refineB1 29 completed in: 934.1s Result Found refineB1 30 completed in: 819.6s Result Found refineB1 31 completed in: 831.2s Result Found refineB1 32 completed in: 787.5s Result Found refineB1 33 completed in: 583.5s Result Found refineB1 34 completed in: 823.4s Result Found refineB1 35 completed in: 619.3s Result Found refineB1 36 completed in: 628.1s Result Found refineB1 37 completed in: 565.3s Result Found refineB1 45 completed in: 867.5s Result Found refineB1 46 completed in: 886.1s Result Found refineB1 38 completed in: 623.6s Result Found refineB1 39 completed in: 774.9s Result Found refineB1 47 completed in: 698.3s Result Found refineB1 48 completed in: 601.1s Result Found refineB1 57 completed in: 707.7s Result Found refineB1 58 completed in: 904.5s Result Found refineB1 40 completed in: 583.0s Result Found refineB1 49 completed in: 689.6s Result Found refineB1 59 completed in: 863.4s Result Found refineB1 60 completed in: 838.5s Result Found refineB1 92 completed in: 632.1s Result Found refineB1 93 completed in: 707.5s Result Found refineB1 94 completed in: 933.5s Result Found refineB1 95 completed in: 711.6s Result Found refineB1 61 completed in: 640.8s Result Found refineB1 96 completed in: 893.0s Result Found refineB1 97 completed in: 802.8s Result Found refineB1 98 completed in: 991.6s Result Found refineB1 99 completed in: 863.1s Result Found refineB1 100 completed in: 645.9s Result Found refineB1 50 completed in: 650.2s Result Found refineB1 101 completed in: 737.0s Result Found refineB1 102 completed in: 689.1s Result Found refineB1 62 completed in: 881.8s Result Found refineB1 103 completed in: 818.5s Result Found refineB1 104 completed in: 640.3s Result Found refineB1 105 completed in: 786.4s Result Found refineB1 189 completed in: 936.6s Result Found refineB1 190 completed in: 1041.7s Result Found refineB1 191 completed in: 940.0s Result Found refineB1 106 completed in: 680.2s Result Found refineB1 192 completed in: 991.2s Result Found refineB1 107 completed in: 885.2s Result Found refineB1 63 completed in: 645.4s Result Found refineB1 41 completed in: 550.3s Result Found refineB1 193 completed in: 858.8s Result Found refineB1 42 completed in: 508.4s Result Found refineB1 108 completed in: 790.1s Result Found refineB1 194 completed in: 829.8s Result Found refineB1 109 completed in: 881.3s Result Found refineB1 195 completed in: 994.4s Result Found refineB1 110 completed in: 899.8s Result Found refineB1 111 completed in: 617.6s Result Found refineB1 196 completed in: 918.5s Result Found refineB1 51 completed in: 748.8s Result Found refineB1 64 completed in: 925.5s Result Found refineB1 112 completed in: 939.5s Result Found refineB1 197 completed in: 1021.2s Result Found refineB1 113 completed in: 994.2s Result Found refineB1 198 completed in: 1131.8s Result Found refineB1 199 completed in: 921.8s Result Found refineB1 114 completed in: 854.5s Result Found refineB1 200 completed in: 710.3s Result Found refineB1 65 completed in: 617.2s Result Found refineB1 115 completed in: 865.8s Result Found refineB1 201 completed in: 817.6s Result Found refineB1 116 completed in: 1106.1s Result Found refineB1 202 completed in: 895.7s Result Found refineB1 117 completed in: 764.9s Result Found refineB1 203 completed in: 829.2s Result Found refineB1 118 completed in: 549.4s Result Found refineB1 204 completed in: 950.4s Result Found refineB1 119 completed in: 841.7s Result Found refineB1 205 completed in: 942.5s Result Found refineB1 206 completed in: 993.7s Result Found refineB1 120 completed in: 756.4s Result Found refineB1 66 completed in: 644.2s Result Found refineB1 207 completed in: 983.1s Result Found refineB1 121 completed in: 793.1s Result Found refineB1 208 completed in: 1073.4s Result Found refineB1 209 completed in: 1030.6s Result Found refineB1 122 completed in: 895.2s Result Found refineB1 210 completed in: 931.7s Result Found refineB1 211 completed in: 887.5s Result Found refineB1 123 completed in: 625.3s Result Found refineB1 67 completed in: 726.7s Result Found refineB1 212 completed in: 1040.4s Result Found refineB1 124 completed in: 1079.7s Result Found refineB1 213 completed in: 876.2s Result Found refineB1 125 completed in: 920.9s Result Found refineB1 52 completed in: 661.1s Result Found refineB1 126 completed in: 1092.6s Result Found refineB1 214 completed in: 917.2s Result Found refineB1 215 completed in: 1089.3s Result Found refineB1 127 completed in: 768.1s Result Found refineB1 128 completed in: 840.8s Result Found refineB1 216 completed in: 828.2s Result Found refineB1 129 completed in: 905.6s Result Found refineB1 217 completed in: 633.7s Result Found refineB1 130 completed in: 938.2s Result Found refineB1 218 completed in: 1082.6s Result Found refineB1 131 completed in: 678.0s Result Found refineB1 219 completed in: 879.5s Result Found refineB1 132 completed in: 784.2s Result Found refineB1 133 completed in: 226.7s Result Found refineB1 220 completed in: 342.4s Result Found refineB1 68 completed in: 460.2s Result Found refineB1 221 completed in: 426.6s Result Found refineB1 134 completed in: 365.9s Result Found refineB1 222 completed in: 403.3s Result Found refineB1 223 completed in: 375.2s Result Found refineB1 135 completed in: 460.0s Result Found refineB1 224 completed in: 547.8s Result Found refineB1 225 completed in: 398.5s Result Found refineB1 136 completed in: 370.3s Result Found refineB1 137 completed in: 533.4s Result Found refineB1 53 completed in: 393.6s Result Found refineB1 69 completed in: 322.0s Result Found refineB1 138 completed in: 455.1s Result Found refineB1 226 completed in: 556.7s Result Found refineB1 70 completed in: 459.7s Result Found refineB1 139 completed in: 742.4s Result Found refineB1 43 completed in: 570.2s Result Found refineB1 140 completed in: 795.7s Result Found refineB1 227 completed in: 787.6s Result Found refineB1 71 completed in: 819.5s Result Found refineB1 228 completed in: 912.7s Result Found refineB1 141 completed in: 843.7s Result Found refineB1 229 completed in: 815.5s Result Found refineB1 142 completed in: 766.9s Result Found refineB1 230 completed in: 819.3s Result Found refineB1 44 completed in: 712.1s Result Found refineB1 231 completed in: 1062.0s Result Found refineB1 143 completed in: 988.5s Result Found refineB1 144 completed in: 1129.6s Result Found refineB1 72 completed in: 827.0s Result Found refineB1 232 completed in: 1540.6s Result Found refineB1 233 completed in: 1097.8s Result Found refineB1 145 completed in: 1158.5s Result Found refineB1 73 completed in: 910.2s Result Found refineB1 234 completed in: 1358.4s Result Found refineB1 146 completed in: 675.9s Result Found refineB1 235 completed in: 1377.7s Result Found refineB1 147 completed in: 1214.1s Result Found refineB1 236 completed in: 1365.8s Result Found refineB1 237 completed in: 1281.6s Result Found refineB1 74 completed in: 1424.3s Result Found refineB1 148 completed in: 1447.3s Result Found refineB1 238 completed in: 1406.8s Result Found refineB1 149 completed in: 1339.1s Result Found refineB1 239 completed in: 1382.7s Result Found refineB1 240 completed in: 1187.6s Result Found refineB1 150 completed in: 1224.3s Result Found refineB1 241 completed in: 1235.2s Result Found refineB1 151 completed in: 1247.7s Result Found refineB1 242 completed in: 1414.7s Result Found refineB1 243 completed in: 1277.6s Result Found refineB1 54 completed in: 1323.7s Result Found refineB1 152 completed in: 1224.1s Result Found refineB1 244 completed in: 1301.7s Result Found refineB1 153 completed in: 1217.4s Result Found refineB1 245 completed in: 1375.1s Result Found refineB1 75 completed in: 1070.1s Result Found refineB1 154 completed in: 1211.5s Result Found refineB1 246 completed in: 1406.4s Result Found refineB1 155 completed in: 1321.3s Result Found refineB1 247 completed in: 1296.3s Result Found refineB1 156 completed in: 1274.7s Result Found refineB1 157 completed in: 988.3s Result Found refineB1 248 completed in: 1219.8s Result Found refineB1 76 completed in: 1110.6s Result Found refineB1 249 completed in: 1281.9s Result Found refineB1 158 completed in: 1440.5s Result Found refineB1 77 completed in: 726.6s Result Found refineB1 159 completed in: 1264.1s Result Found refineB1 250 completed in: 1350.0s Result Found refineB1 160 completed in: 1258.9s Result Found refineB1 251 completed in: 1369.5s Result Found refineB1 78 completed in: 1301.1s Result Found refineB1 161 completed in: 1303.6s Result Found refineB1 252 completed in: 1318.8s Result Found refineB1 253 completed in: 1389.9s Result Found refineB1 162 completed in: 1243.0s Result Found refineB1 79 completed in: 1147.0s Result Found refineB1 254 completed in: 1340.0s Result Found refineB1 163 completed in: 1380.6s Result Found refineB1 255 completed in: 1263.7s Result Found refineB1 256 completed in: 1402.8s Result Found refineB1 164 completed in: 1303.2s Result Found refineB1 257 completed in: 1128.4s Result Found refineB1 165 completed in: 1297.8s Result Found refineB1 80 completed in: 1276.3s Result Found refineB1 258 completed in: 1326.7s Result Found refineB1 166 completed in: 1246.2s Result Found refineB1 259 completed in: 1303.1s Result Found refineB1 167 completed in: 1271.3s Result Found refineB1 260 completed in: 1326.6s Result Found refineB1 55 completed in: 1103.4s Result Found refineB1 168 completed in: 1318.2s Result Found refineB1 261 completed in: 1295.3s Result Found refineB1 81 completed in: 1185.6s Result Found refineB1 169 completed in: 1362.0s Result Found refineB1 262 completed in: 1326.5s Result Found refineB1 170 completed in: 1236.0s Result Found refineB1 263 completed in: 1358.2s Result Found refineB1 171 completed in: 1350.9s Result Found refineB1 172 completed in: 1275.8s Result Found refineB1 82 completed in: 1185.2s Result Found refineB1 264 completed in: 1099.8s Result Found refineB1 173 completed in: 1026.2s Result Found refineB1 83 completed in: 1329.3s Result Found refineB1 265 completed in: 1437.0s Result Found refineB1 266 completed in: 1519.6s Result Found refineB1 174 completed in: 1531.1s Result Found refineB1 84 completed in: 1218.2s Result Found refineB1 267 completed in: 1356.1s Result Found refineB1 268 completed in: 1270.5s Result Found refineB1 269 completed in: 1209.5s Result Found refineB1 270 completed in: 1285.1s Result Found refineB1 271 completed in: 1175.8s Result Found refineB1 272 completed in: 1277.8s Result Found refineB1 273 completed in: 1190.6s Result Found refineB1 274 completed in: 1181.6s Result Found refineB1 275 completed in: 1212.1s Result Found refineB1 276 completed in: 1200.2s Result Found refineB1 277 completed in: 1252.0s Result Found refineB1 278 completed in: 1221.5s Result Found refineB1 279 completed in: 1221.4s Result Found refineB1 280 completed in: 1291.8s Result Found refineB1 281 completed in: 952.1s Result Found refineB1 282 completed in: 1256.9s Result Found refineB1 283 completed in: 1241.2s Result Found refineB1 284 completed in: 1308.3s Result Found refineB1 285 completed in: 1360.8s Result Found refineB1 286 completed in: 1229.4s Result Found refineB1 287 completed in: 1312.6s Result Found refineB1 288 completed in: 1151.0s Result Found refineB1 289 completed in: 1301.3s Result Found refineB1 290 completed in: 1114.1s Result Found refineB1 291 completed in: 1240.9s Result Found refineB1 292 completed in: 1226.5s Result Found refineB1 293 completed in: 1291.4s Result Found refineB1 294 completed in: 1289.0s Result Found refineB1 295 completed in: 1070.0s Result Found refineB1 296 completed in: 1240.7s Result Found refineB1 297 completed in: 1073.1s Result Found refineB1 298 completed in: 1314.4s Result Found refineB1 299 completed in: 1229.0s Result Found refineB1 300 completed in: 1395.1s Result Found refineB1 301 completed in: 1237.9s Result Found refineB1 302 completed in: 1375.4s Result Found refineB1 303 completed in: 1354.9s Result Found refineB1 304 completed in: 1220.5s Result Found refineB1 305 completed in: 1316.4s Result Found refineB1 306 completed in: 1147.3s Result Found refineB1 307 completed in: 1113.5s Result Found refineB1 308 completed in: 1228.7s Result Found refineB1 309 completed in: 1360.1s Result Found refineB1 310 completed in: 1385.8s Result Found refineB1 311 completed in: 1309.6s Result Found refineB1 312 completed in: 1384.3s Result Found refineB1 313 completed in: 1081.9s Result Found refineB1 314 completed in: 1293.0s Result Found refineB1 315 completed in: 1370.2s Result Found refineB1 316 completed in: 1339.4s Result Found refineB1 317 completed in: 1137.7s Result Found refineB1 318 completed in: 1324.3s Result Found refineB1 319 completed in: 1345.1s Result Found refineB1 320 completed in: 1320.1s Result Found refineB1 321 completed in: 1420.2s Result Found refineB1 322 completed in: 1345.0s Result Found refineB1 323 completed in: 1371.6s Result Found refineB1 324 completed in: 1447.8s Result Found refineB1 325 completed in: 1487.7s Result Found refineB1 326 completed in: 1408.5s Result Found refineB1 327 completed in: 1383.9s Result Found refineB1 328 completed in: 1477.9s Result Found refineB1 329 completed in: 1404.3s Result Found refineB1 330 completed in: 1383.7s Result Found refineB1 331 completed in: 1404.2s Result Found refineB1 332 completed in: 1502.3s Result Found refineB1 333 completed in: 1412.2s Result Found refineB1 334 completed in: 1528.4s Result Found refineB1 335 completed in: 1476.7s Result Found refineB1 336 completed in: 1402.6s Result Found refineB1 337 completed in: 1326.7s Result Found refineB1 338 completed in: 1510.6s Result Found refineB1 339 completed in: 1415.8s Result Found refineB1 340 completed in: 1393.8s Result Found refineB1 341 completed in: 1158.1s Result Found refineB1 342 completed in: 1533.5s Result Found refineB1 343 completed in: 1369.2s Result Found refineB1 344 completed in: 1440.4s Result Found refineB1 345 completed in: 1395.1s Result Found refineB1 346 completed in: 1157.9s Result Found refineB1 347 completed in: 1409.1s Result Found refineB1 348 completed in: 1299.2s Result Found refineB1 349 completed in: 1357.0s Result Found refineB1 350 completed in: 1377.0s Result Found refineB1 351 completed in: 1435.6s Result Found refineB1 352 completed in: 1457.5s Result Found refineB1 353 completed in: 1465.6s Result Found refineB1 354 completed in: 1342.0s Result Found refineB1 355 completed in: 1386.1s Result Found refineB1 356 completed in: 1368.8s Result Found refineB1 357 completed in: 1408.8s Result Found refineB1 358 completed in: 1301.4s Result Found refineB1 359 completed in: 1312.3s Result Found refineB1 360 completed in: 1365.3s Result Found refineB1 361 completed in: 1455.2s Result Found refineB1 362 completed in: 1560.0s Result Found refineB1 363 completed in: 1232.1s Result Found refineB1 364 completed in: 1298.7s Result Found refineB1 365 completed in: 1538.6s Result Found refineB1 366 completed in: 1523.2s Result Found refineB1 367 completed in: 1181.1s Result Found refineB1 368 completed in: 1363.4s Result Found refineB1 369 completed in: 1436.2s Result Found refineB1 370 completed in: 1409.8s Result Found refineB1 371 completed in: 1325.6s Result Found refineB1 372 completed in: 1606.6s Result Found refineB1 373 completed in: 1274.2s Result Found refineB1 374 completed in: 1408.3s Result Found refineB1 375 completed in: 1428.7s Result Found refineB1 376 completed in: 1551.6s Result Found refineB1 377 completed in: 1371.4s Result Found refineB1 378 completed in: 1473.6s Result Found refineB1 379 completed in: 1442.7s Result Found refineB1 380 completed in: 1548.6s Result Found refineB1 381 completed in: 1229.7s Result Found refineB1 382 completed in: 1500.6s Result Found refineB1 383 completed in: 1393.5s Result Found refineB1 384 completed in: 1283.9s Result Found refineB1 385 completed in: 1604.3s Result Found refineB1 386 completed in: 1338.9s Result Found refineB1 387 completed in: 1399.1s Result Found refineB1 388 completed in: 1440.6s Result Found refineB1 389 completed in: 1311.5s Result Found refineB1 390 completed in: 1604.2s Result Found refineB1 391 completed in: 1330.9s Result Found refineB1 392 completed in: 1435.9s Result Found refineB1 393 completed in: 1477.7s Result Found refineB1 394 completed in: 1348.1s Result Found refineB1 395 completed in: 1344.4s Result Found refineB1 396 completed in: 1421.0s Result Found refineB1 397 completed in: 1375.0s Result Found refineB1 398 completed in: 1496.8s Result Found refineB1 399 completed in: 1360.3s Result Found refineB1 400 completed in: 1356.8s Result Found refineB1 401 completed in: 1549.7s Result Found refineB1 402 completed in: 1563.9s Result Found refineB1 403 completed in: 1446.6s Result Found refineB1 404 completed in: 1368.5s Result Found refineB1 405 completed in: 1603.7s Result Found refineB1 406 completed in: 1609.9s Result Found refineB1 407 completed in: 1648.0s Result Found refineB1 408 completed in: 1582.1s Result Found refineB1 409 completed in: 1532.8s Result Found refineB1 410 completed in: 1529.5s Result Found refineB1 411 completed in: 1537.6s Result Found refineB1 412 completed in: 1400.9s Result Found refineB1 413 completed in: 1558.5s Result Found refineB1 414 completed in: 1538.6s Result Found refineB1 415 completed in: 1482.9s Result Found refineB1 416 completed in: 1545.5s Result Found refineB1 417 completed in: 1488.7s Result Found refineB1 418 completed in: 1475.8s Result Found refineB1 419 completed in: 1578.6s Result Found refineB1 420 completed in: 1548.2s Result Found refineB1 421 completed in: 1554.6s Result Found refineB1 422 completed in: 1477.5s Result Found refineB1 423 completed in: 1631.5s Result Found refineB1 424 completed in: 1524.3s Result Found refineB1 425 completed in: 1543.2s Result Found refineB1 426 completed in: 1586.8s Result Found refineB1 427 completed in: 1546.2s Result Found refineB1 428 completed in: 1561.1s Result Found refineB1 429 completed in: 1554.4s Result Found refineB1 430 completed in: 1546.1s Result Found refineB1 431 completed in: 1436.7s Result Found refineB1 432 completed in: 1465.8s Result Found refineB1 433 completed in: 1460.9s Result Found refineB1 434 completed in: 1430.6s Result Found refineB1 435 completed in: 1436.5s Result Found refineB1 436 completed in: 1561.8s Result Found refineB1 437 completed in: 1542.2s Result Found refineB1 438 completed in: 1573.0s Result Found refineB1 439 completed in: 1365.4s Result Found refineB1 440 completed in: 1556.1s Result Found refineB1 441 completed in: 1368.5s Result Found refineB1 442 completed in: 1462.5s Result Found refineB1 443 completed in: 1376.2s Result Found refineB1 444 completed in: 1600.1s Result Found refineB1 445 completed in: 1535.1s Result Found refineB1 446 completed in: 1567.5s Result Found refineB1 447 completed in: 1552.2s Result Found refineB1 448 completed in: 1475.5s Result Found refineB1 449 completed in: 1551.8s Result Found refineB1 450 completed in: 1478.9s Result Found refineB1 451 completed in: 1545.7s Result Found refineB1 452 completed in: 1561.2s Result Found refineB1 85 completed in: 1505.5s Result Found refineB1 175 completed in: 1547.3s Result Found refineB1 176 completed in: 1542.5s Result Found refineB1 177 completed in: 1532.8s Result Found refineB1 86 completed in: 1547.9s Result Found refineB1 178 completed in: 1589.1s Result Found refineB1 179 completed in: 1587.9s Result Found refineB1 180 completed in: 1605.0s Result Found refineB1 87 completed in: 1445.2s Result Found refineB1 181 completed in: 1546.1s Result Found refineB1 182 completed in: 1452.4s Result Found refineB1 56 completed in: 1446.2s Result Found refineB1 183 completed in: 1459.5s Result Found refineB1 88 completed in: 1538.3s Result Found refineB1 184 completed in: 1563.3s Result Found refineB1 185 completed in: 1553.2s Result Found refineB1 89 completed in: 1538.7s Result Found refineB1 186 completed in: 1552.4s Result Found refineB1 187 completed in: 1472.7s Result Found refineB1 90 completed in: 1593.4s Result Found refineB1 188 completed in: 1626.8s Result Found refineB1 91 completed in: 1539.1s Result Found refineB1 453 completed in: 1351.9s Result Found Completed 453 jobs on 56 threads Clock time: 0h 28.40m CPU time : 149h 11.52m Begin machine parsable segment for: refineB1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineB1_contig7.cmap 796.81448 19155.45 343.06 13:13.24 2458% 1323088 Mon Nov 14 15:52:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1.cmap 788.71492 16579.42 336.81 13:06.45 2150% 2266880 Mon Nov 14 15:52:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig8.cmap 743.32504 17346.15 311.81 12:21.15 2382% 1273532 Mon Nov 14 15:51:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig5.cmap 730.68958 16062.43 288.81 12:06.70 2250% 1465420 Mon Nov 14 15:51:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig11.cmap 1450.26320 16368.89 310.03 24:08.49 1151% 1076168 Mon Nov 14 15:50:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig14.cmap 1576.39185 16019.80 174.98 26:12.96 1029% 962532 Mon Nov 14 16:05:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig12.cmap 1638.38297 15988.69 179.20 27:15.92 988% 972208 Mon Nov 14 16:06:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig4.cmap 1585.17906 16526.21 221.50 26:21.32 1059% 1588492 Mon Nov 14 16:05:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig3.cmap 1483.92433 13904.73 145.24 24:40.33 949% 1469488 Mon Nov 14 16:07:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig2.cmap 1612.39546 12479.43 86.49 26:49.65 780% 1579784 Mon Nov 14 16:06:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig9.cmap 1661.07100 16785.84 197.89 27:38.05 1024% 1315456 Mon Nov 14 16:16:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig6.cmap 1449.97132 12144.66 148.06 24:02.58 852% 1434404 Mon Nov 14 16:03:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig16.cmap 1576.85445 11696.41 65.30 26:14.04 747% 797188 Mon Nov 14 16:05:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig10.cmap 1555.85366 13098.14 132.30 25:52.05 852% 1112220 Mon Nov 14 16:05:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig17.cmap 1317.76877 11454.38 121.30 21:50.52 883% 766148 Mon Nov 14 15:42:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig21.cmap 1412.57929 10692.90 100.64 23:29.27 765% 715964 Mon Nov 14 16:06:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig15.cmap 1501.92822 10462.10 60.74 24:59.53 701% 775188 Mon Nov 14 16:04:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig13.cmap 1234.82216 10366.35 116.26 20:29.95 852% 1075608 Mon Nov 14 16:00:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig19.cmap 1427.35482 11159.97 129.78 23:39.96 795% 1017404 Mon Nov 14 16:03:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig23.cmap 1302.01320 9074.05 92.72 21:38.00 706% 660580 Mon Nov 14 16:10:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig27.cmap 1332.25428 9968.40 107.68 22:03.96 761% 649824 Mon Nov 14 16:01:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig22.cmap 1298.60641 8652.77 49.26 21:34.75 672% 664388 Mon Nov 14 16:01:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig25.cmap 1399.75809 9220.65 82.09 23:15.32 666% 648844 Mon Nov 14 16:02:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig18.cmap 1344.02242 10074.73 123.47 22:17.16 762% 877388 Mon Nov 14 15:42:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig30.cmap 1276.99072 8790.46 78.77 21:11.98 697% 614332 Mon Nov 14 16:04:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig34.cmap 1250.09739 7269.08 54.79 20:44.73 588% 494552 Mon Nov 14 16:00:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig24.cmap 912.94188 5757.12 62.67 15:06.66 641% 570668 Mon Nov 14 15:54:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig20.cmap 927.18124 4835.37 29.74 15:14.37 532% 719304 Mon Nov 14 15:54:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig26.cmap 934.12488 4776.43 27.79 15:23.66 520% 668712 Mon Nov 14 16:04:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig29.cmap 819.55244 4620.90 29.15 13:28.55 575% 661436 Mon Nov 14 15:53:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig36.cmap 831.24439 4205.77 29.28 13:39.36 516% 390092 Mon Nov 14 15:53:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig28.cmap 787.45258 3864.10 21.87 12:54.00 502% 541340 Mon Nov 14 16:02:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig31.cmap 583.47096 2857.58 22.09 9:32.66 502% 535612 Mon Nov 14 15:49:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig35.cmap 823.36201 3773.99 16.34 13:35.87 464% 333624 Mon Nov 14 15:53:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig33.cmap 619.27366 3116.17 20.44 10:07.30 516% 429016 Mon Nov 14 15:49:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig32.cmap 628.12254 3258.67 27.18 10:18.78 531% 469956 Mon Nov 14 15:30:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig37.cmap 565.25432 2695.32 10.81 9:16.76 486% 294084 Mon Nov 14 15:52:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig46.cmap 867.45321 3086.74 16.23 14:17.19 361% 406488 Mon Nov 14 15:53:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig45.cmap 886.11674 2772.04 13.97 14:32.05 319% 285212 Mon Nov 14 16:03:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig42.cmap 623.56787 2821.40 13.08 10:15.09 460% 236988 Mon Nov 14 15:53:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig38.cmap 774.94020 2666.57 7.92 12:49.89 347% 265472 Mon Nov 14 15:52:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig112.cmap 698.33480 2408.42 15.43 11:26.06 353% 243716 Mon Nov 14 15:51:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig44.cmap 601.09471 1962.74 11.20 9:51.72 333% 311992 Mon Nov 14 15:49:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig54.cmap 707.66587 1828.52 6.17 11:39.14 262% 282756 Mon Nov 14 15:51:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig62.cmap 904.48506 2476.70 14.11 14:52.66 279% 308812 Mon Nov 14 15:54:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig40.cmap 583.04421 2437.78 9.96 9:32.78 427% 258068 Mon Nov 14 15:49:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig60.cmap 689.61060 2273.03 15.93 11:19.59 336% 251008 Mon Nov 14 15:31:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig570.cmap 863.42329 2057.76 13.61 14:12.58 242% 170136 Mon Nov 14 16:03:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig110.cmap 838.49128 2294.55 16.29 13:48.72 278% 232572 Mon Nov 14 15:56:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig492.cmap 632.10953 1485.10 5.37 10:25.46 238% 167776 Mon Nov 14 15:50:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig411.cmap 707.45520 1328.41 11.62 11:36.47 192% 199888 Mon Nov 14 15:51:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig158.cmap 933.52411 1778.58 14.02 15:21.47 194% 200304 Mon Nov 14 15:55:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1109.cmap 711.62883 1623.58 6.30 11:44.63 231% 183472 Mon Nov 14 15:51:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig65.cmap 640.75761 1500.92 10.69 10:30.44 239% 273216 Mon Nov 14 15:50:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig601.cmap 893.04954 2063.16 15.19 14:42.15 235% 182600 Mon Nov 14 15:54:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1228.cmap 802.84696 1431.12 13.06 13:14.12 181% 183832 Mon Nov 14 15:33:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig79.cmap 991.63239 1859.21 14.19 16:19.16 191% 211456 Mon Nov 14 16:05:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig186.cmap 863.12075 1751.27 13.76 14:13.99 206% 192164 Mon Nov 14 15:57:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1394.cmap 645.92731 1556.31 5.83 10:38.52 244% 166992 Mon Nov 14 15:50:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig92.cmap 650.24286 2067.62 14.08 10:38.16 326% 248196 Mon Nov 14 15:50:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig428.cmap 737.02298 1024.14 10.11 12:05.63 142% 177492 Mon Nov 14 15:51:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig561.cmap 689.11121 1619.78 6.19 11:21.95 238% 181088 Mon Nov 14 15:50:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig440.cmap 881.75945 2002.39 13.55 14:29.11 231% 224624 Mon Nov 14 15:54:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig753.cmap 818.54406 1084.28 9.81 13:27.36 135% 182900 Mon Nov 14 15:53:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1026.cmap 640.33300 1235.28 10.42 10:29.74 197% 184408 Mon Nov 14 15:30:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig519.cmap 786.43163 1243.10 9.00 12:51.67 162% 169960 Mon Nov 14 16:02:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig952.cmap 936.58134 1528.00 13.06 15:17.76 167% 186216 Mon Nov 14 15:58:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig152.cmap 1041.68116 2026.52 18.26 17:12.96 197% 209076 Mon Nov 14 15:56:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig751.cmap 939.98094 1651.14 12.53 15:30.89 178% 184760 Mon Nov 14 15:55:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig75.cmap 680.19917 1542.24 6.06 11:14.33 229% 195068 Mon Nov 14 15:50:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1007.cmap 991.24301 1376.94 12.71 16:20.22 141% 192008 Mon Nov 14 15:56:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig674.cmap 885.17349 1657.18 13.17 14:33.84 191% 198456 Mon Nov 14 15:54:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig307.cmap 645.42447 1700.70 12.81 10:33.74 270% 170632 Mon Nov 14 15:30:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig43.cmap 550.28879 2028.55 10.78 8:54.18 381% 260692 Mon Nov 14 15:58:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig712.cmap 858.79221 1253.39 11.18 14:08.56 149% 180816 Mon Nov 14 15:57:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig47.cmap 508.38633 2122.67 11.12 8:19.37 427% 222396 Mon Nov 14 15:48:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig462.cmap 790.14222 1516.52 11.24 12:53.79 197% 193624 Mon Nov 14 15:52:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig427.cmap 829.84704 1821.62 8.65 13:44.44 222% 220864 Mon Nov 14 15:53:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig85.cmap 881.25426 1466.76 11.57 14:27.48 170% 193572 Mon Nov 14 15:54:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig116.cmap 994.36774 1671.67 13.82 16:21.74 171% 216400 Mon Nov 14 15:36:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig510.cmap 899.80488 1669.59 12.07 14:44.97 190% 197032 Mon Nov 14 16:04:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig521.cmap 617.61399 1046.11 9.25 10:08.94 173% 179228 Mon Nov 14 15:53:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig449.cmap 918.49067 1512.52 14.42 15:07.40 168% 180524 Mon Nov 14 15:54:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig68.cmap 748.78944 2261.55 12.24 12:15.06 309% 249524 Mon Nov 14 15:52:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig117.cmap 925.53525 2321.00 9.43 15:22.35 252% 229508 Mon Nov 14 15:54:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1051.cmap 939.51513 1678.46 13.65 15:23.71 183% 185468 Mon Nov 14 15:55:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig387.cmap 1021.20519 1694.98 16.14 16:49.95 169% 210784 Mon Nov 14 15:37:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig862.cmap 994.16140 1685.55 12.43 16:18.76 173% 181664 Mon Nov 14 16:05:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig573.cmap 1131.76022 2049.91 18.13 18:40.07 184% 207244 Mon Nov 14 16:01:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1121.cmap 921.82256 1561.31 13.34 15:08.21 173% 169840 Mon Nov 14 15:54:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig506.cmap 854.45797 1976.48 13.41 13:57.48 237% 194708 Mon Nov 14 15:53:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1193.cmap 710.30645 1576.95 5.93 11:43.64 224% 190456 Mon Nov 14 15:51:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig89.cmap 617.24141 1521.92 6.46 10:11.57 249% 223820 Mon Nov 14 15:49:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig482.cmap 865.78769 1469.97 12.51 14:11.18 174% 201192 Mon Nov 14 15:53:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig993.cmap 817.55872 1235.81 11.80 13:26.03 154% 174004 Mon Nov 14 15:33:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig676.cmap 1106.14598 2377.38 16.34 18:11.93 219% 181868 Mon Nov 14 16:07:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig518.cmap 895.68383 1519.44 12.54 14:42.34 173% 165520 Mon Nov 14 15:57:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig871.cmap 764.89367 1430.48 12.38 12:31.92 191% 191624 Mon Nov 14 15:52:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig973.cmap 829.19101 1172.56 10.66 13:34.24 145% 169880 Mon Nov 14 15:53:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig808.cmap 549.37768 1199.96 4.78 9:04.26 221% 159900 Mon Nov 14 15:48:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig348.cmap 950.42962 2131.73 7.94 15:46.89 225% 210512 Mon Nov 14 15:55:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig511.cmap 841.68121 1204.18 9.87 13:46.23 146% 188352 Mon Nov 14 15:53:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1406.cmap 942.46930 1502.51 13.74 15:29.66 163% 171740 Mon Nov 14 15:35:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1000.cmap 993.70777 1328.21 11.95 16:20.34 136% 180824 Mon Nov 14 16:05:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1488.cmap 756.35223 1630.86 10.91 12:21.79 221% 179780 Mon Nov 14 15:55:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig609.cmap 644.24604 1477.36 10.79 10:32.07 235% 166340 Mon Nov 14 15:50:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig119.cmap 983.11488 1531.40 14.08 16:07.10 159% 190936 Mon Nov 14 15:55:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig622.cmap 793.10437 1826.31 8.41 13:09.33 232% 179700 Mon Nov 14 15:52:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig369.cmap 1073.44661 1946.50 16.46 17:39.21 185% 192328 Mon Nov 14 15:57:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig338.cmap 1030.56645 2006.72 17.26 16:59.72 198% 196908 Mon Nov 14 15:37:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1372.cmap 895.21381 1294.67 10.48 14:39.62 148% 190960 Mon Nov 14 16:04:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1386.cmap 931.71811 1372.95 12.68 15:16.70 151% 168660 Mon Nov 14 15:55:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig974.cmap 887.54089 1376.96 10.94 14:33.21 158% 169440 Mon Nov 14 15:54:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig996.cmap 625.33900 1486.87 5.57 10:20.71 240% 160028 Mon Nov 14 15:49:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig623.cmap 726.72233 1165.78 9.08 11:49.36 165% 176396 Mon Nov 14 15:51:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig598.cmap 1040.35549 1841.51 17.23 17:06.77 181% 203036 Mon Nov 14 15:37:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig680.cmap 1079.73173 1900.02 14.97 17:44.75 179% 179096 Mon Nov 14 16:07:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1314.cmap 876.23646 1710.18 13.26 14:22.24 199% 205112 Mon Nov 14 15:54:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig617.cmap 920.90160 1611.23 12.07 15:03.66 179% 160852 Mon Nov 14 15:54:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig106.cmap 661.10460 1877.74 7.14 10:55.29 287% 252972 Mon Nov 14 15:50:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig488.cmap 1092.55427 2474.53 16.39 17:57.49 231% 192872 Mon Nov 14 15:57:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig383.cmap 917.24259 1379.48 14.07 15:05.75 153% 195760 Mon Nov 14 15:35:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig240.cmap 1089.26656 2212.79 21.13 17:55.35 207% 208432 Mon Nov 14 15:57:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig820.cmap 768.05535 1799.53 6.65 12:42.28 236% 165868 Mon Nov 14 15:52:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig465.cmap 840.84201 1175.28 9.89 13:38.76 144% 177512 Mon Nov 14 15:53:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig141.cmap 828.22314 1270.80 11.77 13:35.44 157% 194024 Mon Nov 14 15:33:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig590.cmap 905.61387 1541.55 13.41 14:45.96 175% 181128 Mon Nov 14 15:54:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig850.cmap 633.66689 1484.71 6.15 10:30.12 236% 195984 Mon Nov 14 15:50:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig671.cmap 938.20366 1787.81 11.83 15:16.13 196% 182496 Mon Nov 14 15:55:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1592.cmap 1082.61590 2082.00 15.95 17:45.59 196% 191280 Mon Nov 14 15:38:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1253.cmap 678.04376 1051.98 9.21 11:02.90 160% 165884 Mon Nov 14 15:50:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig734.cmap 879.54433 1318.32 10.83 14:17.44 155% 173032 Mon Nov 14 15:54:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig880.cmap 784.15409 1347.13 10.80 12:46.41 177% 179008 Mon Nov 14 15:52:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig273.cmap 226.71967 1197.75 8.61 3:38.82 551% 199108 Mon Nov 14 15:43:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1316.cmap 342.39937 1725.70 10.55 5:33.40 520% 187980 Mon Nov 14 15:45:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig489.cmap 460.15883 1477.89 14.82 7:38.09 325% 230636 Mon Nov 14 15:34:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1370.cmap 426.62231 1178.51 11.28 7:02.13 281% 185620 Mon Nov 14 15:33:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig802.cmap 365.89093 1154.80 11.52 6:03.55 320% 179892 Mon Nov 14 15:32:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig260.cmap 403.26648 1087.53 12.62 6:35.87 277% 215164 Mon Nov 14 15:33:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig114.cmap 375.17093 1040.23 10.08 6:09.82 284% 205320 Mon Nov 14 15:32:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig692.cmap 459.99276 1382.88 12.25 7:36.24 305% 198308 Mon Nov 14 15:34:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig647.cmap 547.84554 1621.12 15.81 9:01.35 302% 206384 Mon Nov 14 15:35:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1128.cmap 398.45134 1144.99 12.12 6:35.51 292% 171020 Mon Nov 14 15:33:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1564.cmap 370.31883 1168.86 11.99 6:05.81 322% 168460 Mon Nov 14 15:32:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig913.cmap 533.43611 1674.29 15.95 8:46.91 320% 204136 Mon Nov 14 15:35:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig53.cmap 393.64709 1421.87 12.58 6:29.07 368% 275716 Mon Nov 14 15:33:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig566.cmap 321.97113 979.92 8.81 5:15.70 313% 216960 Mon Nov 14 15:31:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig732.cmap 455.11700 1437.26 13.88 7:31.55 321% 169908 Mon Nov 14 15:34:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig134.cmap 556.71263 1628.42 17.28 9:09.94 299% 221324 Mon Nov 14 15:35:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig989.cmap 459.68567 1133.02 6.44 3:53.43 488% 169272 Mon Nov 14 15:47:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig352.cmap 742.36929 1192.43 12.97 6:57.42 288% 198556 Mon Nov 14 15:38:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig48.cmap 570.20780 1343.48 7.31 3:47.31 594% 292868 Mon Nov 14 15:49:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1138.cmap 795.65403 1312.57 13.06 7:03.68 312% 165692 Mon Nov 14 15:39:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig764.cmap 787.56556 1137.18 11.07 6:51.62 278% 210936 Mon Nov 14 15:39:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig339.cmap 819.52266 1311.84 11.77 7:21.60 299% 222020 Mon Nov 14 15:40:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig424.cmap 912.65105 1635.55 16.12 8:36.51 319% 184308 Mon Nov 14 15:41:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig658.cmap 843.72100 1340.22 16.50 7:21.14 307% 183952 Mon Nov 14 15:40:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig839.cmap 815.47874 1202.54 11.38 6:50.38 295% 184632 Mon Nov 14 15:40:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1086.cmap 766.94328 970.23 10.83 5:39.42 289% 177232 Mon Nov 14 15:39:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig999.cmap 819.29095 963.00 10.92 6:00.33 270% 184356 Mon Nov 14 15:40:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig49.cmap 712.07298 1733.58 11.41 4:09.34 699% 213312 Mon Nov 14 15:51:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig143.cmap 1062.01094 1840.75 19.79 9:59.97 310% 210732 Mon Nov 14 15:44:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig163.cmap 988.50562 1584.64 18.45 8:45.01 305% 202660 Mon Nov 14 15:42:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig819.cmap 1129.61292 1361.14 14.48 10:15.47 223% 183820 Mon Nov 14 15:58:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig472.cmap 826.97323 878.66 8.99 4:53.95 301% 167976 Mon Nov 14 15:40:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig508.cmap 1540.61897 1802.54 18.59 16:33.31 183% 208376 Mon Nov 14 16:14:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig786.cmap 1097.75231 1577.94 21.67 9:17.50 286% 212920 Mon Nov 14 15:44:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1337.cmap 1158.47753 1506.83 6.25 10:18.07 244% 198696 Mon Nov 14 15:59:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1129.cmap 910.22283 1107.08 12.80 6:02.08 309% 214964 Mon Nov 14 15:41:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig843.cmap 1358.39703 1696.52 14.57 13:28.91 211% 176028 Mon Nov 14 16:05:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1249.cmap 675.93787 724.64 8.75 2:01.45 603% 154180 Mon Nov 14 15:51:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1514.cmap 1377.67160 1797.85 17.27 13:30.79 223% 195124 Mon Nov 14 16:02:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig656.cmap 1214.05824 1055.23 10.07 10:47.06 164% 170888 Mon Nov 14 16:00:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1665.cmap 1365.80784 1663.79 16.77 13:25.37 208% 193796 Mon Nov 14 16:02:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1235.cmap 1281.55870 1259.98 12.58 11:44.54 180% 194484 Mon Nov 14 16:01:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig530.cmap 1424.28313 1467.98 10.87 13:58.07 176% 170876 Mon Nov 14 16:03:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1200.cmap 1447.33395 1492.88 11.40 14:22.55 174% 186516 Mon Nov 14 16:04:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1111.cmap 1406.75776 2000.02 9.33 13:41.43 244% 203892 Mon Nov 14 16:03:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1023.cmap 1339.14404 1554.63 16.08 12:31.45 209% 189332 Mon Nov 14 16:05:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig517.cmap 1382.69956 1759.62 16.97 13:19.33 222% 168900 Mon Nov 14 16:06:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1323.cmap 1187.62931 1455.71 5.02 10:05.16 241% 163428 Mon Nov 14 16:00:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1005.cmap 1224.25814 1462.99 15.51 10:35.83 232% 176048 Mon Nov 14 15:41:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig923.cmap 1235.21338 1493.82 15.80 10:48.71 232% 206884 Mon Nov 14 15:41:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig688.cmap 1247.66409 1546.42 7.01 10:59.28 235% 199300 Mon Nov 14 16:01:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig113.cmap 1414.72942 2253.83 8.21 13:42.19 275% 190612 Mon Nov 14 16:03:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig660.cmap 1277.58073 1386.80 15.69 11:18.52 206% 185364 Mon Nov 14 15:42:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig69.cmap 1323.72740 1758.72 8.79 12:00.64 245% 248292 Mon Nov 14 16:02:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1384.cmap 1224.05317 1436.57 13.98 10:19.86 234% 163956 Mon Nov 14 16:00:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1531.cmap 1301.74822 1499.78 16.21 11:38.01 217% 184704 Mon Nov 14 15:42:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1210.cmap 1217.35605 1607.40 6.47 10:16.83 261% 196068 Mon Nov 14 16:00:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig111.cmap 1375.06283 1616.07 19.82 12:51.67 211% 214132 Mon Nov 14 16:03:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig636.cmap 1070.08959 1047.21 3.67 7:33.16 231% 156332 Mon Nov 14 15:58:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig727.cmap 1211.54555 1423.69 5.26 9:35.78 248% 167956 Mon Nov 14 16:00:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig304.cmap 1406.40989 1798.05 19.62 12:49.58 236% 204160 Mon Nov 14 16:03:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig381.cmap 1321.31371 1614.93 6.74 11:18.86 238% 199836 Mon Nov 14 16:02:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1584.cmap 1296.30880 1246.33 14.76 10:48.51 194% 190160 Mon Nov 14 15:42:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig263.cmap 1274.68548 1341.87 15.95 10:21.18 218% 165408 Mon Nov 14 16:01:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig853.cmap 988.26564 928.52 10.05 5:35.43 279% 185736 Mon Nov 14 15:56:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1163.cmap 1219.80554 1225.49 5.10 9:19.59 219% 199820 Mon Nov 14 16:00:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig457.cmap 1110.60263 1001.34 10.75 7:21.19 229% 161224 Mon Nov 14 15:58:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig618.cmap 1281.88549 1465.90 5.50 10:17.76 238% 182056 Mon Nov 14 16:01:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig413.cmap 1440.53873 2019.73 8.99 12:54.90 261% 207056 Mon Nov 14 16:04:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig333.cmap 726.59761 618.64 9.74 0:55.89 1124% 160684 Mon Nov 14 15:52:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig303.cmap 1264.08803 1358.56 14.64 9:43.10 235% 192828 Mon Nov 14 16:01:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1418.cmap 1349.95951 1304.88 6.51 11:07.25 196% 172200 Mon Nov 14 16:02:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig925.cmap 1258.93855 1094.18 6.47 9:34.17 191% 180900 Mon Nov 14 16:01:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1424.cmap 1369.53721 1465.60 7.62 11:27.10 214% 211332 Mon Nov 14 16:03:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig80.cmap 1301.08816 1543.62 8.34 10:17.19 251% 220232 Mon Nov 14 16:01:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig367.cmap 1303.55537 1370.60 6.74 10:20.80 221% 181556 Mon Nov 14 16:02:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig149.cmap 1318.77791 1220.80 6.46 10:36.08 192% 169108 Mon Nov 14 16:02:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1308.cmap 1389.92195 1514.66 8.64 11:47.13 215% 196500 Mon Nov 14 16:03:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig95.cmap 1243.01564 1075.08 5.52 9:21.28 192% 196684 Mon Nov 14 16:01:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig882.cmap 1147.03743 1010.00 5.36 7:44.37 218% 167232 Mon Nov 14 15:59:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1680.cmap 1340.02705 1332.71 8.41 10:57.38 204% 209064 Mon Nov 14 16:02:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig458.cmap 1380.57201 1522.91 8.34 11:36.43 219% 170252 Mon Nov 14 16:03:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig894.cmap 1263.66005 1139.09 5.95 9:40.92 197% 185976 Mon Nov 14 16:01:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig700.cmap 1402.82487 1453.28 9.72 12:00.70 202% 197028 Mon Nov 14 16:03:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1333.cmap 1303.22920 1297.40 13.30 10:09.89 214% 174716 Mon Nov 14 16:02:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1105.cmap 1128.41329 1252.40 15.25 7:10.85 294% 219260 Mon Nov 14 15:46:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1288.cmap 1297.82239 1238.19 5.50 10:00.14 207% 156192 Mon Nov 14 16:01:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig664.cmap 1276.33472 1447.21 7.90 9:38.43 251% 173592 Mon Nov 14 16:01:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig544.cmap 1326.71047 1231.42 6.49 10:29.47 196% 193900 Mon Nov 14 16:02:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1353.cmap 1246.23778 939.89 4.67 9:08.13 172% 159688 Mon Nov 14 16:01:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig423.cmap 1303.06189 1216.80 6.02 10:03.27 202% 199352 Mon Nov 14 16:02:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig393.cmap 1271.25445 1115.54 5.52 9:33.37 195% 180760 Mon Nov 14 16:01:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1359.cmap 1326.61283 1128.21 5.41 10:27.60 180% 169784 Mon Nov 14 16:02:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig58.cmap 1103.37150 1082.44 5.60 6:43.29 269% 212460 Mon Nov 14 15:58:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1292.cmap 1318.21570 1242.71 6.30 10:21.28 201% 168308 Mon Nov 14 16:02:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig137.cmap 1295.25083 979.40 5.09 9:58.33 164% 162100 Mon Nov 14 16:01:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig252.cmap 1185.55381 1053.59 5.09 8:07.52 217% 170476 Mon Nov 14 16:00:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig649.cmap 1361.97510 1364.92 7.19 11:02.88 206% 190000 Mon Nov 14 16:03:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig699.cmap 1326.46094 1128.14 6.32 10:27.90 180% 193340 Mon Nov 14 16:02:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig283.cmap 1236.00895 1250.01 5.36 8:56.54 233% 164956 Mon Nov 14 16:00:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig900.cmap 1358.23352 1276.80 14.07 10:53.41 197% 183736 Mon Nov 14 16:02:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig838.cmap 1350.88539 1626.66 15.80 10:35.92 258% 197600 Mon Nov 14 16:06:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig174.cmap 1275.78078 1138.40 14.28 9:13.97 208% 187408 Mon Nov 14 16:01:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig421.cmap 1185.22033 1268.42 4.62 7:42.79 275% 149932 Mon Nov 14 16:00:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig669.cmap 1099.77739 1106.75 13.63 6:15.76 298% 182840 Mon Nov 14 15:45:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig914.cmap 1026.22647 803.23 7.23 4:58.91 271% 161316 Mon Nov 14 15:57:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig132.cmap 1329.29752 1746.53 7.60 9:58.67 293% 188972 Mon Nov 14 16:02:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig921.cmap 1437.04161 1000.23 12.23 11:33.10 146% 159888 Mon Nov 14 16:13:53 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig602.cmap 1519.60436 1325.89 16.02 12:56.77 172% 171716 Mon Nov 14 16:15:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig726.cmap 1531.12812 2062.22 19.10 13:08.46 263% 197576 Mon Nov 14 16:15:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig192.cmap 1218.15873 1506.87 14.18 7:54.38 320% 176552 Mon Nov 14 16:00:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1043.cmap 1356.11197 1348.97 14.42 10:11.37 223% 190400 Mon Nov 14 16:02:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig327.cmap 1270.50164 1147.11 8.36 8:48.04 218% 169536 Mon Nov 14 16:01:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig722.cmap 1209.48755 887.76 5.92 7:45.02 192% 164552 Mon Nov 14 16:00:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig723.cmap 1285.10725 1078.03 9.20 9:03.24 200% 204536 Mon Nov 14 16:01:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1602.cmap 1175.84487 772.59 4.94 7:12.96 179% 251440 Mon Nov 14 15:59:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1598.cmap 1277.80424 1083.11 6.91 8:55.77 203% 195116 Mon Nov 14 16:01:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig729.cmap 1190.62919 846.05 6.38 7:27.52 190% 163112 Mon Nov 14 16:00:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig733.cmap 1181.61819 723.37 5.59 7:19.83 165% 169040 Mon Nov 14 16:00:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1155.cmap 1212.07485 999.37 6.44 7:50.65 213% 183368 Mon Nov 14 16:00:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1153.cmap 1200.16689 853.98 6.20 7:38.41 187% 222252 Mon Nov 14 16:00:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1154.cmap 1252.00100 957.33 7.09 8:28.00 189% 165448 Mon Nov 14 16:01:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1046.cmap 1221.48093 962.82 6.45 7:56.99 203% 167472 Mon Nov 14 16:00:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1616.cmap 1221.44534 892.92 5.98 7:56.64 188% 164504 Mon Nov 14 16:00:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig745.cmap 1291.84082 1325.18 8.84 9:10.78 242% 179044 Mon Nov 14 16:01:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1625.cmap 952.12701 480.11 6.76 3:30.67 231% 167320 Mon Nov 14 15:43:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1626.cmap 1256.93480 1148.45 4.82 8:29.10 226% 163464 Mon Nov 14 16:01:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig746.cmap 1241.15934 1048.98 7.25 8:11.71 214% 161980 Mon Nov 14 16:01:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1047.cmap 1308.32035 1105.47 7.47 9:19.56 198% 211944 Mon Nov 14 16:02:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1171.cmap 1360.84090 1466.14 7.91 10:11.54 241% 252308 Mon Nov 14 16:03:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1172.cmap 1229.43720 911.52 6.10 8:00.23 191% 180620 Mon Nov 14 16:00:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig350.cmap 1312.59887 1195.45 8.38 9:23.41 213% 208856 Mon Nov 14 16:02:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1693.cmap 1150.96853 726.74 4.06 6:42.73 181% 251936 Mon Nov 14 15:59:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1050.cmap 1301.29517 1241.35 6.68 9:11.74 226% 221676 Mon Nov 14 16:02:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1434.cmap 1114.10514 584.12 4.16 6:05.61 160% 158708 Mon Nov 14 15:58:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1237.cmap 1240.91255 942.55 6.86 8:10.50 193% 179604 Mon Nov 14 16:01:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig860.cmap 1226.52473 932.87 6.67 7:57.93 196% 190816 Mon Nov 14 16:00:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1537.cmap 1291.41208 1119.27 7.27 9:02.70 207% 225864 Mon Nov 14 16:01:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig354.cmap 1288.99602 1190.36 7.53 9:01.27 221% 217236 Mon Nov 14 16:01:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1091.cmap 1069.97338 464.78 3.29 5:19.90 146% 185696 Mon Nov 14 15:58:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1435.cmap 1240.72222 959.82 5.54 8:11.58 196% 207020 Mon Nov 14 16:01:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig906.cmap 1073.07432 957.07 11.77 5:21.96 300% 174480 Mon Nov 14 15:45:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1641.cmap 1314.44880 1147.32 12.16 9:14.24 209% 216872 Mon Nov 14 15:42:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig185.cmap 1228.98556 1569.70 19.58 7:39.66 345% 264888 Mon Nov 14 15:47:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig502.cmap 1395.08158 1489.97 17.30 10:20.85 242% 185884 Mon Nov 14 16:03:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1748.cmap 1237.89430 738.24 9.24 7:42.23 161% 227604 Mon Nov 14 15:41:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig643.cmap 1375.42982 1415.17 13.91 10:02.31 237% 226500 Mon Nov 14 16:03:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1094.cmap 1354.92552 864.53 10.38 9:41.14 150% 217940 Mon Nov 14 16:02:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1857.cmap 1220.50661 879.47 3.83 7:25.90 198% 170592 Mon Nov 14 16:00:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig761.cmap 1316.35673 1118.05 5.34 9:03.24 206% 250504 Mon Nov 14 16:02:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1749.cmap 1147.28081 1053.87 11.02 6:13.34 285% 227716 Mon Nov 14 15:46:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig547.cmap 1113.47661 924.86 12.07 5:37.62 277% 255956 Mon Nov 14 15:45:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1805.cmap 1228.68915 608.32 8.64 7:26.13 138% 171668 Mon Nov 14 15:41:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1001.cmap 1360.12650 1393.97 11.88 9:37.14 243% 271380 Mon Nov 14 16:03:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1191.cmap 1385.81313 1094.27 14.23 10:03.18 183% 222692 Mon Nov 14 16:03:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1807.cmap 1309.64838 810.21 10.71 8:45.56 156% 210936 Mon Nov 14 16:02:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig766.cmap 1384.28847 1338.33 5.58 10:01.10 223% 165096 Mon Nov 14 16:03:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1192.cmap 1081.93944 806.41 8.85 4:58.73 272% 193664 Mon Nov 14 15:45:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig864.cmap 1293.03428 724.02 8.82 8:16.94 147% 155024 Mon Nov 14 16:05:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig505.cmap 1370.17579 1230.57 13.49 9:37.61 215% 185348 Mon Nov 14 16:03:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1342.cmap 1339.37977 667.88 11.58 9:03.96 124% 160944 Mon Nov 14 16:02:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig285.cmap 1137.69152 890.94 10.73 5:38.71 266% 171540 Mon Nov 14 15:46:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig373.cmap 1324.27283 661.66 10.18 8:26.56 132% 169920 Mon Nov 14 16:02:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1441.cmap 1345.10799 1126.95 11.81 8:50.28 214% 200856 Mon Nov 14 16:06:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1810.cmap 1320.05723 794.69 8.30 8:24.76 159% 259724 Mon Nov 14 16:05:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1194.cmap 1420.23343 837.19 10.74 10:01.94 140% 253700 Mon Nov 14 16:13:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig651.cmap 1345.02656 730.94 11.49 8:42.77 142% 156964 Mon Nov 14 16:02:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig821.cmap 1371.61645 974.16 12.00 9:10.69 179% 249244 Mon Nov 14 16:03:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1442.cmap 1447.75974 1005.42 13.53 10:16.41 165% 160592 Mon Nov 14 16:04:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1195.cmap 1487.66044 1013.60 12.03 10:55.45 156% 208876 Mon Nov 14 16:05:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1512.cmap 1408.50290 1127.60 13.29 9:34.10 198% 271160 Mon Nov 14 16:03:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1513.cmap 1383.85986 934.80 12.84 9:08.70 172% 168556 Mon Nov 14 16:03:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1393.cmap 1477.88406 1076.46 12.26 10:38.74 170% 171628 Mon Nov 14 16:14:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1754.cmap 1404.29940 1101.91 12.06 9:24.21 197% 168156 Mon Nov 14 16:03:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1869.cmap 1383.74891 1236.93 12.53 8:59.97 231% 225936 Mon Nov 14 16:03:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1444.cmap 1404.24938 1210.65 14.10 9:17.94 219% 204520 Mon Nov 14 16:03:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig777.cmap 1502.26164 989.77 12.01 10:55.03 152% 167016 Mon Nov 14 16:15:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1755.cmap 1412.16197 1389.59 13.98 9:19.34 250% 265272 Mon Nov 14 16:07:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1516.cmap 1528.36496 1214.11 13.50 11:14.57 181% 171824 Mon Nov 14 16:15:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig868.cmap 1476.68915 1066.23 10.03 10:19.58 173% 222984 Mon Nov 14 16:04:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1704.cmap 1402.63121 873.71 12.08 9:01.61 163% 202776 Mon Nov 14 16:03:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1517.cmap 1326.74002 574.31 8.91 7:39.76 126% 161688 Mon Nov 14 16:02:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig916.cmap 1510.60647 1473.31 17.48 10:46.13 230% 209972 Mon Nov 14 16:05:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1756.cmap 1415.82976 704.80 11.42 9:11.47 129% 196020 Mon Nov 14 16:03:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1350.cmap 1393.83026 902.02 11.06 8:48.35 172% 272716 Mon Nov 14 16:03:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig823.cmap 1158.08205 828.06 10.01 4:50.83 288% 174240 Mon Nov 14 15:46:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1757.cmap 1533.51308 1545.32 14.62 11:02.51 235% 218028 Mon Nov 14 16:05:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1520.cmap 1369.23335 1141.16 12.80 8:14.31 233% 166272 Mon Nov 14 15:43:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1706.cmap 1440.42124 991.67 13.63 9:22.41 178% 162984 Mon Nov 14 16:04:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig249.cmap 1395.13090 1444.98 13.37 8:33.62 283% 251308 Mon Nov 14 16:03:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig512.cmap 1157.89106 778.96 9.57 4:41.43 280% 200304 Mon Nov 14 15:46:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1399.cmap 1409.13249 1031.06 13.00 8:44.27 199% 185180 Mon Nov 14 16:03:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1449.cmap 1299.23805 546.73 8.51 6:54.69 133% 226132 Mon Nov 14 16:02:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig963.cmap 1356.99526 999.83 4.58 7:57.38 210% 197088 Mon Nov 14 16:02:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1555.cmap 1377.00075 1161.47 12.76 8:11.85 238% 227596 Mon Nov 14 16:03:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1298.cmap 1435.55065 898.69 11.21 9:09.39 165% 227260 Mon Nov 14 16:04:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1202.cmap 1457.52241 809.32 9.93 9:28.90 144% 169796 Mon Nov 14 16:14:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1556.cmap 1465.59838 971.96 12.09 9:36.81 170% 209456 Mon Nov 14 16:14:24 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1878.cmap 1341.96237 687.72 8.28 7:30.44 154% 160796 Mon Nov 14 16:06:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1527.cmap 1386.08239 1004.20 10.46 8:09.68 207% 283768 Mon Nov 14 16:03:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig826.cmap 1368.82216 966.15 10.96 7:53.31 206% 189112 Mon Nov 14 16:03:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1827.cmap 1408.84615 1041.31 12.18 8:31.98 205% 255312 Mon Nov 14 16:03:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1401.cmap 1301.35634 815.31 11.28 6:44.16 204% 162568 Mon Nov 14 15:42:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1828.cmap 1312.29101 822.42 3.68 6:48.16 202% 171916 Mon Nov 14 16:02:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1662.cmap 1365.31532 625.85 9.49 7:09.45 147% 166068 Mon Nov 14 16:03:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1013.cmap 1455.18916 640.68 7.56 8:33.28 126% 169344 Mon Nov 14 16:04:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1830.cmap 1559.97875 1157.87 12.69 10:18.04 189% 213092 Mon Nov 14 16:16:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1358.cmap 1232.09430 909.47 10.74 4:47.53 320% 169576 Mon Nov 14 15:47:49 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1081.cmap 1298.67323 795.18 9.64 5:53.44 227% 192512 Mon Nov 14 15:42:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig969.cmap 1538.59874 1057.98 11.59 9:53.09 180% 226156 Mon Nov 14 16:15:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1113.cmap 1523.24637 695.65 10.54 9:33.36 123% 188768 Mon Nov 14 16:15:23 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1207.cmap 1181.14184 623.19 8.55 3:48.26 276% 171408 Mon Nov 14 15:47:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1833.cmap 1363.36563 865.01 10.31 6:27.25 226% 218124 Mon Nov 14 15:43:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig926.cmap 1436.20856 1448.96 13.77 7:32.76 323% 263088 Mon Nov 14 15:44:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1303.cmap 1409.76410 967.07 5.61 7:05.45 228% 228248 Mon Nov 14 16:03:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1408.cmap 1325.59837 613.03 9.53 5:27.56 190% 154532 Mon Nov 14 15:43:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1457.cmap 1606.64070 1660.23 17.07 10:11.97 274% 182500 Mon Nov 14 16:07:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1115.cmap 1274.15785 878.73 10.26 4:17.29 345% 252924 Mon Nov 14 15:48:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1087.cmap 1408.33417 722.59 5.26 6:22.96 190% 186516 Mon Nov 14 16:03:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig789.cmap 1428.68485 922.95 14.33 6:40.94 233% 174084 Mon Nov 14 16:04:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig696.cmap 1551.57620 969.07 12.41 8:33.58 191% 209128 Mon Nov 14 16:15:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1459.cmap 1371.43068 650.64 10.58 5:33.15 198% 162712 Mon Nov 14 15:43:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1255.cmap 1473.58465 786.07 9.29 7:11.87 184% 260920 Mon Nov 14 16:04:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1568.cmap 1442.67464 1340.90 16.86 6:34.44 344% 252028 Mon Nov 14 16:04:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1716.cmap 1548.55912 780.74 10.85 8:10.61 161% 165112 Mon Nov 14 16:15:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1672.cmap 1229.65448 471.28 6.86 2:52.63 276% 252780 Mon Nov 14 15:47:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1256.cmap 1500.60715 1267.09 7.59 7:13.48 294% 190576 Mon Nov 14 16:05:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1461.cmap 1393.54546 535.63 4.35 5:26.48 165% 187868 Mon Nov 14 16:03:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1718.cmap 1283.90103 723.44 9.66 3:33.73 343% 190632 Mon Nov 14 15:48:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1769.cmap 1604.34265 1313.62 14.13 8:41.89 254% 226528 Mon Nov 14 16:07:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1570.cmap 1338.94470 1065.00 12.18 4:19.13 415% 193928 Mon Nov 14 15:49:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1845.cmap 1399.09725 966.02 12.06 5:17.59 307% 261512 Mon Nov 14 16:07:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1368.cmap 1440.57446 869.63 6.83 5:42.79 255% 196876 Mon Nov 14 16:04:26 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1464.cmap 1311.46332 681.50 9.30 3:33.08 324% 165960 Mon Nov 14 15:49:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig933.cmap 1604.20713 1159.23 13.42 8:19.00 235% 254460 Mon Nov 14 16:07:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1416.cmap 1330.93222 864.37 10.35 3:40.45 396% 187104 Mon Nov 14 15:49:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig795.cmap 1435.89483 806.34 5.45 5:23.26 251% 228244 Mon Nov 14 16:04:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1124.cmap 1477.70391 1019.17 5.24 5:59.32 285% 165396 Mon Nov 14 16:05:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1218.cmap 1348.09383 878.72 11.87 3:44.41 396% 174564 Mon Nov 14 15:49:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1721.cmap 1344.35475 777.96 10.17 3:28.52 377% 171220 Mon Nov 14 15:49:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1311.cmap 1420.96950 664.02 4.68 4:37.91 240% 182092 Mon Nov 14 16:04:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig526.cmap 1374.98034 1213.84 19.00 3:49.09 538% 222548 Mon Nov 14 15:50:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1025.cmap 1496.76036 828.60 6.51 5:48.67 239% 167524 Mon Nov 14 16:05:22 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1419.cmap 1360.28318 809.87 11.26 3:23.96 402% 170780 Mon Nov 14 15:50:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1222.cmap 1356.79146 773.40 11.92 3:20.36 391% 172132 Mon Nov 14 15:49:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1683.cmap 1549.65658 1058.84 6.96 6:19.20 281% 169440 Mon Nov 14 16:06:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig983.cmap 1563.93042 1117.16 9.40 6:25.46 292% 180680 Mon Nov 14 16:06:30 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1775.cmap 1446.61595 818.12 6.15 4:26.34 309% 204948 Mon Nov 14 16:04:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig271.cmap 1368.45193 798.34 11.56 3:07.54 431% 194404 Mon Nov 14 15:50:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1724.cmap 1603.68217 879.43 11.86 6:59.32 212% 168924 Mon Nov 14 16:07:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1263.cmap 1609.88232 1212.37 14.31 7:05.13 288% 163884 Mon Nov 14 16:07:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1580.cmap 1648.04433 1734.14 18.93 7:43.79 377% 319664 Mon Nov 14 16:07:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1264.cmap 1582.13967 729.82 10.51 6:37.27 186% 188352 Mon Nov 14 16:06:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1581.cmap 1532.75858 577.32 8.71 5:47.87 168% 160104 Mon Nov 14 16:06:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig941.cmap 1529.52512 1192.45 7.59 5:47.99 344% 206896 Mon Nov 14 16:05:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig276.cmap 1537.59743 1331.56 8.43 5:55.94 376% 168736 Mon Nov 14 16:06:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig434.cmap 1400.92076 755.29 12.12 3:36.45 354% 170920 Mon Nov 14 16:03:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1475.cmap 1558.50474 1008.49 7.30 6:13.89 271% 167428 Mon Nov 14 16:06:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1427.cmap 1538.62992 1202.91 8.32 5:43.93 352% 168500 Mon Nov 14 16:06:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1689.cmap 1482.89718 853.49 4.69 4:48.50 297% 276100 Mon Nov 14 16:05:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1728.cmap 1545.53563 1509.28 8.33 5:51.42 431% 253972 Mon Nov 14 16:06:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig533.cmap 1488.67194 760.38 5.00 4:54.16 260% 159792 Mon Nov 14 16:05:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1585.cmap 1475.81949 826.93 4.39 4:41.33 295% 159984 Mon Nov 14 16:05:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1033.cmap 1578.62335 1545.27 11.52 6:22.36 407% 305792 Mon Nov 14 16:06:45 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1782.cmap 1548.17605 1129.44 5.03 5:44.89 328% 218204 Mon Nov 14 16:06:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1478.cmap 1554.61032 1196.57 9.56 5:48.31 346% 188948 Mon Nov 14 16:06:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig991.cmap 1477.45277 655.54 4.52 4:28.88 245% 166316 Mon Nov 14 16:05:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1431.cmap 1631.53853 1611.17 18.82 6:57.08 390% 169272 Mon Nov 14 16:07:38 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig716.cmap 1524.33382 941.54 7.48 5:12.60 303% 166748 Mon Nov 14 16:05:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig948.cmap 1543.21568 976.05 7.49 5:29.47 298% 169852 Mon Nov 14 16:06:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1785.cmap 1586.79036 813.94 9.95 6:08.39 223% 161480 Mon Nov 14 16:06:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig994.cmap 1546.15293 986.14 6.51 5:30.76 300% 164180 Mon Nov 14 16:06:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig620.cmap 1561.08852 1124.76 8.66 5:45.82 327% 225612 Mon Nov 14 16:06:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig539.cmap 1554.36969 1205.48 13.14 5:36.58 362% 259076 Mon Nov 14 15:46:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig621.cmap 1546.05864 1143.75 8.25 5:29.84 349% 249060 Mon Nov 14 16:06:14 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1736.cmap 1436.67187 905.92 12.70 3:34.07 429% 160552 Mon Nov 14 16:07:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig403.cmap 1465.83958 1244.47 14.39 4:02.95 518% 190872 Mon Nov 14 16:08:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1737.cmap 1460.89555 1219.75 16.89 3:57.48 520% 252264 Mon Nov 14 16:08:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1738.cmap 1430.64801 819.05 10.84 3:26.83 401% 253172 Mon Nov 14 16:07:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig847.cmap 1436.49075 978.89 10.92 3:32.92 464% 258776 Mon Nov 14 16:07:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1792.cmap 1561.81341 1125.67 6.32 5:39.13 333% 215204 Mon Nov 14 16:06:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1739.cmap 1542.15091 1113.85 11.76 5:16.14 356% 255144 Mon Nov 14 15:46:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig442.cmap 1572.96050 1183.65 10.34 5:48.18 342% 188664 Mon Nov 14 16:06:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1796.cmap 1365.35750 570.00 9.06 2:20.63 411% 165456 Mon Nov 14 15:50:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1330.cmap 1556.12338 1194.97 14.06 5:26.59 370% 224772 Mon Nov 14 15:46:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1743.cmap 1368.51958 626.42 11.55 2:20.25 454% 168904 Mon Nov 14 15:50:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig443.cmap 1462.48215 1000.43 9.65 3:53.15 433% 159816 Mon Nov 14 16:04:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig206.cmap 1376.16894 687.91 12.07 2:25.18 482% 183448 Mon Nov 14 15:50:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig157.cmap 1600.12616 1872.85 28.49 6:06.73 518% 219816 Mon Nov 14 15:47:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig498.cmap 1535.11106 853.07 6.00 5:00.25 286% 251388 Mon Nov 14 16:06:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig211.cmap 1567.53212 1044.69 9.31 5:30.10 319% 188512 Mon Nov 14 16:06:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig212.cmap 1552.20514 868.56 6.59 5:14.70 278% 209804 Mon Nov 14 16:06:20 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig224.cmap 1475.49969 1223.14 11.00 3:58.36 517% 267008 Mon Nov 14 16:05:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig225.cmap 1551.75254 1296.69 10.07 5:12.32 418% 199344 Mon Nov 14 16:06:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig226.cmap 1478.91667 1152.71 11.12 3:57.50 490% 207564 Mon Nov 14 16:05:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig230.cmap 1545.66769 1057.04 7.07 5:02.36 351% 194628 Mon Nov 14 16:06:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig183.cmap 1561.24545 1294.01 9.96 5:17.70 410% 274656 Mon Nov 14 16:06:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig832.cmap 1505.52914 968.28 5.04 4:21.75 371% 151640 Mon Nov 14 16:05:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig406.cmap 1547.32135 1234.29 8.53 5:04.01 408% 167236 Mon Nov 14 16:06:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1213.cmap 1542.53028 1063.17 7.09 4:59.14 357% 180588 Mon Nov 14 16:06:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig940.cmap 1532.83291 935.15 5.93 4:47.66 327% 166696 Mon Nov 14 16:06:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1139.cmap 1547.92986 799.55 9.33 5:00.69 269% 158456 Mon Nov 14 16:15:52 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1331.cmap 1589.06194 1128.63 14.82 5:41.84 334% 161564 Mon Nov 14 16:16:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig666.cmap 1587.86429 1278.57 12.87 5:39.47 380% 183164 Mon Nov 14 16:16:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1280.cmap 1604.99137 1410.04 18.69 5:56.64 400% 178156 Mon Nov 14 16:16:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig551.cmap 1445.21157 927.17 7.13 3:14.06 481% 168216 Mon Nov 14 16:04:33 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1296.cmap 1546.08320 1629.33 8.87 4:54.99 555% 167344 Mon Nov 14 16:06:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig977.cmap 1452.44420 1213.53 23.58 3:15.10 634% 185632 Mon Nov 14 16:04:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig125.cmap 1446.17343 1241.96 14.54 3:06.50 673% 204268 Mon Nov 14 16:04:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1049.cmap 1459.49168 889.21 7.61 3:21.26 445% 164044 Mon Nov 14 16:04:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig503.cmap 1538.31049 1294.65 11.38 4:33.53 477% 173484 Mon Nov 14 15:46:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1469.cmap 1563.27602 1438.80 14.95 4:59.49 485% 200132 Mon Nov 14 15:47:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1299.cmap 1553.17299 1387.30 12.66 4:48.85 484% 168144 Mon Nov 14 15:46:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig452.cmap 1538.71700 1293.06 11.84 4:34.56 475% 170028 Mon Nov 14 15:46:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig1169.cmap 1552.43171 1070.56 7.18 4:48.99 372% 180052 Mon Nov 14 16:06:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig416.cmap 1472.69755 1117.61 10.30 3:27.18 544% 185216 Mon Nov 14 16:05:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig166.cmap 1593.42538 1110.04 13.41 5:22.71 348% 189128 Mon Nov 14 16:07:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig362.cmap 1626.81822 1404.48 18.16 5:55.12 400% 197608 Mon Nov 14 16:07:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig854.cmap 1539.11267 1408.26 11.58 4:28.38 529% 152676 Mon Nov 14 15:46:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineB1_contig184.cmap 1351.85320 192.50 1.67 1:22.73 234% 137700 Mon Nov 14 16:03:00 CST 2022 2022-11-14 21:54:53,182:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 21:54:53,188:INFO:Loaded 12015 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 21:54:53,217:INFO:Found 1927 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 21:54:53,217:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:54:53,219:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:54:53,220:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_refineB1 2022-11-14 21:54:53,220:INFO:conda_env=None,conda_source=None 2022-11-14 21:54:53,220:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 21:54:53,227:INFO: START 1: mrg_exp_refineB, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:55:01,168:INFO: STOP 1: mrg_exp_refineB, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.13m RunTime= 0h 0.09m CPUload=243% bionano1c 2022-11-14 21:55:01,168:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_refineB1 2022-11-14 21:55:01,169:INFO: mrg_exp_refineB1_0 completed in: 7.9s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.13m CPU time : 0h 0.13m Begin machine parsable segment for: Cmap_Merge_exp_refineB1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_refineB1_0 7.94062 9.16 3.37 0:05.14 243% 571388 Mon Nov 14 16:08:03 CST 2022 2022-11-14 21:55:02,875:INFO:Generating jobs for CharacterizeD_refineB1 2022-11-14 21:55:02,875:INFO:CharacterizeD_refineB1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/EXP_REFINEB1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/alignref/EXP_REFINEB1 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 21:55:02,876:INFO:Running jobs for CharacterizeD_refineB1 2022-11-14 21:55:02,877:INFO:************************* Executing stage 14: Merge0 ************************* 2022-11-14 21:55:02,877:INFO:Generating jobs for Merge0 2022-11-14 21:55:02,878:INFO:extensionCount= 0 : Adding firstMerge args 2022-11-14 21:55:02,878:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 21:55:02,878:INFO: Starting Multi-Threaded Process: CharacterizeD_refineB1 2022-11-14 21:55:02,878:INFO:conda_env=None,conda_source=None 2022-11-14 21:55:02,879:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:55:02,884:INFO:Loaded 12019 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 21:55:02,905:INFO:Found 1927 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1 2022-11-14 21:55:02,905:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/mergeContigs.txt 2022-11-14 21:55:02,906:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/mergeContigs.txt 2022-11-14 21:55:02,906:INFO:Merge0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/exp_mrg0 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -sr 0.02 -pairmerge 160 0.0 100.0 100.0 100.0 5 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineB1/mergeContigs.txt 2022-11-14 21:55:02,907:INFO:Running jobs for Merge0 2022-11-14 21:55:02,907:INFO: Starting Multi-Threaded Process: Merge0 2022-11-14 21:55:02,907:INFO:conda_env=None,conda_source=None 2022-11-14 21:55:02,907:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:55:02,918:INFO: START 1: Merge0, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:55:02,919:INFO: START 1: CharD_refineB1, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:55:25,086:INFO: STOP 1: Merge0, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.37m RunTime= 0h 0.35m CPUload=2376% saphyr1a 2022-11-14 21:55:25,087:INFO: Finished Multi-Threaded Process: Merge0 2022-11-14 21:55:25,096:INFO: Merge0 completed in: 22.2s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.37m CPU time : 0h 0.37m Begin machine parsable segment for: Merge0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge0 22.16743 331.19 168.53 0:21.02 2376% 26995756 Mon Nov 14 15:55:24 CST 2022 2022-11-14 21:55:25,096:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 21:55:25,096:INFO:Loaded 114 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 21:55:25,098:INFO:Found 112 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 21:55:25,099:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:55:25,099:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 21:55:25,100:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg0 2022-11-14 21:55:25,101:INFO:conda_env=None,conda_source=None 2022-11-14 21:55:25,101:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 21:55:25,122:INFO: START 1: mrg_exp_mrg0_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:55:29,085:INFO: STOP 1: mrg_exp_mrg0_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.07m RunTime= 0h 0.03m CPUload=118% bionano1c 2022-11-14 21:55:29,085:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg0 2022-11-14 21:55:29,086:INFO: mrg_exp_mrg0_0 completed in: 4.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.07m CPU time : 0h 0.07m Begin machine parsable segment for: Cmap_Merge_exp_mrg0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg0_0 3.96242 1.46 0.36 0:01.54 118% 146540 Mon Nov 14 16:08:31 CST 2022 2022-11-14 21:55:30,117:INFO:Generating jobs for CharacterizeD_Merge0 2022-11-14 21:55:30,117:INFO:CharacterizeD_Merge0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/EXP_MRG0.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/alignref/EXP_MRG0 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 21:55:30,119:INFO:Running jobs for CharacterizeD_Merge0 2022-11-14 21:55:30,120:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge0 2022-11-14 21:55:30,120:INFO:conda_env=None,conda_source=None 2022-11-14 21:55:30,120:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:55:30,119:INFO:************************* Executing stage 15: extension0_1 ************************* 2022-11-14 21:55:30,121:INFO:Starting stage extension0 2022-11-14 21:55:30,121:INFO:extension0 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 21:55:30,122:INFO:Generating Jobs for extension0, conf.extensionCount= 1 2022-11-14 21:55:30,123:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 21:55:30,124:INFO:Loaded 118 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 21:55:30,127:INFO:Found 112 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0 2022-11-14 21:55:30,128:INFO:computing modified weights for noES extension stage= extension0 2022-11-14 21:55:30,128:INFO:Calling contigComputeWeights with ExtensionNoES= True 2022-11-14 21:55:30,138:INFO: START 1: CharD_Merge0, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 21:55:30,195:INFO:Changing maxthreads from 56 to 48, TotThreads from 56 to 56 2022-11-14 21:55:30,196:INFO:MaxWeight = 180.00, witr= 0, threads= 48 (totThreads=56, minthreads=6, maxthreads=48), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_group_weights 2022-11-14 21:55:30,741:INFO:NumHostJobs= 1, TotalJobs= 61, HostWeight= 112500.00000000001, TargetWeight= 18071.439089768162, TotalWeight= 225892.98862210204 2022-11-14 21:55:30,741:INFO:restoring maxthreads from 48 to 56, TotThreads from 56 to 56 2022-11-14 21:55:30,746:INFO:extension0_1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg0/EXP_MRG0.cmap -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 21:55:30,746:INFO: Starting Multi-Threaded Process: extension0_1 2022-11-14 21:55:30,746:INFO:conda_env=None,conda_source=None 2022-11-14 21:55:30,746:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:55:30,749:INFO: START 1: extension0 , 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 21:55:30,780:INFO: START 2: extension0 , 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 21:55:30,813:INFO: START 3: extension0 , 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 21:55:30,837:INFO: START 4: extension0 , 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 21:55:30,867:INFO: START 5: extension0 , 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 21:55:30,892:INFO: START 6: extension0 , 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 21:55:30,950:INFO: START 7: extension0 , 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 21:55:30,983:INFO: START 8: extension0 , 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 21:55:31,011:INFO: START 9: extension0 , 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 21:55:31,046:INFO: START 10: extension0 1, 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 21:55:31,079:INFO: START 11: extension0 1, 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 21:55:31,113:INFO: START 12: extension0 1, 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 21:55:31,137:INFO: START 13: extension0 1, 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 21:55:31,177:INFO: START 14: extension0 1, 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 21:55:31,201:INFO: START 15: extension0 1, 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 21:55:31,225:INFO: START 16: extension0 1, 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 21:55:34,031:INFO: STOP 1: CharD_refineB1, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.52m RunTime= 0h 0.13m CPUload=1461% saphyr1a 2022-11-14 21:55:34,031:INFO: Finished Multi-Threaded Process: CharacterizeD_refineB1 2022-11-14 21:55:34,032:INFO:Characterize refineB1 completed : will check Results 2022-11-14 21:55:34,032:INFO: CharD_refineB1 completed in: 31.1s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.52m CPU time : 0h 0.52m Begin machine parsable segment for: CharacterizeD_refineB1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_refineB1 31.11159 103.50 10.53 0:07.80 1461% 1279612 Mon Nov 14 15:55:33 CST 2022 2022-11-14 21:55:36,442:INFO:Stage Summary: CharacterizeD_refineB1 Number Genome Maps: 1918 Total Genome Map Length (Mbp): 2032.658 Mean Genome Map Length (Mbp): 1.060 Median Genome Map Length (Mbp): 0.380 Genome Map N50 (Mbp): 17.381 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 3.007 Total number of aligned Genome Maps : 4 (0.00) Total Aligned Length (Mbp) : 0.459 Total Aligned Length / Reference Length: 0.001 Total Unique Aligned Length (Mbp) : 0.232 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 21:55:36,442:INFO:Characterize refineB1 results check completed 2022-11-14 21:55:43,057:INFO: STOP 1: CharD_Merge0, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.22m RunTime= 0h 0.12m CPUload=1477% saphyr1a 2022-11-14 21:55:43,058:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge0 2022-11-14 21:55:43,059:INFO:Characterize Merge0 completed : will check Results 2022-11-14 21:55:43,059:INFO: CharD_Merge0 completed in: 12.9s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.22m CPU time : 0h 0.22m Begin machine parsable segment for: CharacterizeD_Merge0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge0 12.91898 99.00 9.39 0:07.33 1477% 1186408 Mon Nov 14 15:55:42 CST 2022 2022-11-14 21:55:44,397:INFO:Stage Summary: CharacterizeD_Merge0 Number Genome Maps: 112 Total Genome Map Length (Mbp): 1285.110 Mean Genome Map Length (Mbp): 11.474 Median Genome Map Length (Mbp): 1.916 Genome Map N50 (Mbp): 43.186 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.901 Total number of aligned Genome Maps : 2 (0.02) Total Aligned Length (Mbp) : 0.231 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.231 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 21:55:44,398:INFO:Characterize Merge0 results check completed 2022-11-14 21:56:25,328:INFO: STOP 16: extension0 1, 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 0.90m RunTime= 0h 0.85m CPUload=4192% bionano2d 2022-11-14 21:56:25,331:INFO: STOP 15: extension0 1, 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 0.90m RunTime= 0h 0.86m CPUload=4186% bionano1b 2022-11-14 21:57:10,942:INFO: STOP 11: extension0 1, 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 1.66m RunTime= 0h 1.61m CPUload=2316% saphyr1d 2022-11-14 21:57:13,072:INFO: STOP 14: extension0 1, 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 1.70m RunTime= 0h 1.64m CPUload=2286% bionano1d 2022-11-14 21:57:16,661:INFO: STOP 9: extension0 , 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 1.76m RunTime= 0h 1.68m CPUload=2216% saphyr1b 2022-11-14 21:57:18,460:INFO: STOP 10: extension0 1, 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.70m CPUload=2146% bionano2b 2022-11-14 21:57:18,539:INFO: STOP 1: extension0 , 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 1.80m RunTime= 0h 1.72m CPUload=2169% bionano1c 2022-11-14 21:57:19,463:INFO: STOP 7: extension0 , 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 1.81m RunTime= 0h 1.76m CPUload=2137% saphyr1b 2022-11-14 21:57:20,014:INFO: STOP 4: extension0 , 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.74m CPUload=2140% bionano1c 2022-11-14 21:57:20,071:INFO: STOP 6: extension0 , 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.75m CPUload=2172% saphyr1c 2022-11-14 21:57:21,039:INFO: STOP 13: extension0 1, 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.76m CPUload=2124% saphyr1d 2022-11-14 21:57:21,131:INFO: STOP 3: extension0 , 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.81m CPUload=2114% saphyr1c 2022-11-14 21:57:21,200:INFO: STOP 8: extension0 , 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.80m CPUload=2090% bionano2b 2022-11-14 21:57:21,202:INFO: STOP 5: extension0 , 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.78m CPUload=2118% bionano2c 2022-11-14 21:57:21,439:INFO: STOP 12: extension0 1, 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.76m CPUload=2118% bionano1d 2022-11-14 21:57:22,211:INFO: STOP 2: extension0 , 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 1.86m RunTime= 0h 1.81m CPUload=2091% bionano2c 2022-11-14 21:57:22,211:INFO: Finished Multi-Threaded Process: extension0_1 2022-11-14 21:57:22,215:INFO: extension0 1 completed in: 107.8s Result Found extension0 2 completed in: 111.4s Result Found extension0 3 completed in: 110.3s Result Found extension0 4 completed in: 109.2s Result Found extension0 5 completed in: 110.3s Result Found extension0 6 completed in: 109.2s Result Found extension0 7 completed in: 108.5s Result Found extension0 8 completed in: 110.2s Result Found extension0 9 completed in: 105.6s Result Found extension0 10 completed in: 107.4s Result Found extension0 11 completed in: 99.9s Result Found extension0 12 completed in: 110.3s Result Found extension0 13 completed in: 109.9s Result Found extension0 14 completed in: 101.9s Result Found extension0 15 completed in: 54.1s Result Found extension0 16 completed in: 54.1s Result Found Completed 16 jobs on 56 threads Clock time: 0h 1.86m CPU time : 0h 27.00m Begin machine parsable segment for: extension0_1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension0_1_bnx1 107.78976 2200.68 31.30 1:42.88 2169% 2285616 Mon Nov 14 16:10:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx2 111.43051 2241.10 30.67 1:48.61 2091% 2292184 Mon Nov 14 16:10:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx3 110.31725 2260.90 32.79 1:48.48 2114% 2291552 Mon Nov 14 16:13:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx4 109.17660 2193.87 34.02 1:44.09 2140% 2285164 Mon Nov 14 16:10:19 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx5 110.33537 2234.43 31.83 1:46.96 2118% 2290388 Mon Nov 14 16:10:22 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx6 109.17843 2247.53 32.16 1:44.94 2172% 2285928 Mon Nov 14 16:13:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx7 108.51205 2216.45 37.54 1:45.42 2137% 2289336 Mon Nov 14 15:50:53 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx8 110.21648 2225.76 31.68 1:47.99 2090% 2296320 Mon Nov 14 16:10:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx9 105.64943 2208.20 31.69 1:41.04 2216% 2289992 Mon Nov 14 15:50:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx10 107.41409 2163.00 26.08 1:42.00 2146% 2284648 Mon Nov 14 16:10:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx11 99.86261 2208.35 28.02 1:36.54 2316% 2288076 Mon Nov 14 16:19:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx12 110.32605 2203.70 32.98 1:45.56 2118% 2283540 Mon Nov 14 16:10:22 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx13 109.90208 2205.13 31.93 1:45.28 2124% 2292564 Mon Nov 14 16:19:58 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx14 101.89547 2212.51 31.33 1:38.13 2286% 2295768 Mon Nov 14 16:10:15 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx15 54.13002 2115.03 32.43 0:51.29 4186% 2280568 Mon Nov 14 16:09:27 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_1_bnx16 54.10242 2109.38 31.31 0:51.06 4192% 2286860 Mon Nov 14 16:09:27 CST 2022 2022-11-14 21:57:22,215:INFO:************************* Executing stage 16: extension1_1 ************************* 2022-11-14 21:57:22,215:INFO:Starting stage extension1 2022-11-14 21:57:22,215:INFO:extension1 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 21:57:22,216:INFO:Generating Jobs for extension1, conf.extensionCount= 1 2022-11-14 21:57:22,217:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1 inputContigPrefix= exp_extension0_1 2022-11-14 21:57:22,230:INFO:extension1_1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 48 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1/exp_extension1_1 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_group1 -f -stdout -stderr -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 3 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_1/exp_extension0_1_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 21:57:22,231:INFO: Starting Multi-Threaded Process: extension1_1 2022-11-14 21:57:22,231:INFO:conda_env=None,conda_source=None 2022-11-14 21:57:22,231:INFO: Running 61 jobs with 56 threads, sleepTime=0.01 2022-11-14 21:57:22,305:INFO: START 1: extension1 , 56 Thr, 1 R, 61 T, 0 F, 60 Q 2022-11-14 21:57:22,329:INFO: START 2: extension1 , 48 Thr, 2 R, 61 T, 0 F, 59 Q 2022-11-14 21:57:22,369:INFO: START 3: extension1 , 6 Thr, 3 R, 61 T, 0 F, 58 Q 2022-11-14 21:57:22,395:INFO: START 4: extension1 2, 6 Thr, 4 R, 61 T, 0 F, 57 Q 2022-11-14 21:57:22,428:INFO: START 5: extension1 , 6 Thr, 5 R, 61 T, 0 F, 56 Q 2022-11-14 21:57:22,455:INFO: START 6: extension1 2, 6 Thr, 6 R, 61 T, 0 F, 55 Q 2022-11-14 21:57:22,484:INFO: START 7: extension1 , 6 Thr, 7 R, 61 T, 0 F, 54 Q 2022-11-14 21:57:22,517:INFO: START 8: extension1 , 6 Thr, 8 R, 61 T, 0 F, 53 Q 2022-11-14 21:57:22,543:INFO: START 9: extension1 , 6 Thr, 9 R, 61 T, 0 F, 52 Q 2022-11-14 21:57:22,568:INFO: START 10: extension1 , 6 Thr, 10 R, 61 T, 0 F, 51 Q 2022-11-14 21:57:22,592:INFO: START 11: extension1 , 6 Thr, 11 R, 61 T, 0 F, 50 Q 2022-11-14 21:57:22,617:INFO: START 12: extension1 1, 6 Thr, 12 R, 61 T, 0 F, 49 Q 2022-11-14 21:57:22,652:INFO: START 13: extension1 2, 6 Thr, 13 R, 61 T, 0 F, 48 Q 2022-11-14 21:57:22,679:INFO: START 14: extension1 3, 6 Thr, 14 R, 61 T, 0 F, 47 Q 2022-11-14 21:57:22,704:INFO: START 15: extension1 3, 6 Thr, 15 R, 61 T, 0 F, 46 Q 2022-11-14 21:57:22,729:INFO: START 16: extension1 1, 6 Thr, 16 R, 61 T, 0 F, 45 Q 2022-11-14 21:57:22,767:INFO: START 17: extension1 3, 6 Thr, 17 R, 61 T, 0 F, 44 Q 2022-11-14 21:57:22,796:INFO: START 18: extension1 4, 6 Thr, 18 R, 61 T, 0 F, 43 Q 2022-11-14 21:57:22,821:INFO: START 19: extension1 3, 6 Thr, 19 R, 61 T, 0 F, 42 Q 2022-11-14 21:57:22,852:INFO: START 20: extension1 1, 6 Thr, 20 R, 61 T, 0 F, 41 Q 2022-11-14 21:57:22,877:INFO: START 21: extension1 3, 6 Thr, 21 R, 61 T, 0 F, 40 Q 2022-11-14 21:57:22,909:INFO: START 22: extension1 1, 6 Thr, 22 R, 61 T, 0 F, 39 Q 2022-11-14 21:57:22,934:INFO: START 23: extension1 4, 6 Thr, 23 R, 61 T, 0 F, 38 Q 2022-11-14 21:57:22,960:INFO: START 24: extension1 4, 6 Thr, 24 R, 61 T, 0 F, 37 Q 2022-11-14 21:57:22,985:INFO: START 25: extension1 1, 6 Thr, 25 R, 61 T, 0 F, 36 Q 2022-11-14 21:57:23,037:INFO: START 26: extension1 4, 6 Thr, 26 R, 61 T, 0 F, 35 Q 2022-11-14 21:57:23,063:INFO: START 27: extension1 3, 6 Thr, 27 R, 61 T, 0 F, 34 Q 2022-11-14 21:57:23,088:INFO: START 28: extension1 3, 6 Thr, 28 R, 61 T, 0 F, 33 Q 2022-11-14 21:57:23,116:INFO: START 29: extension1 1, 6 Thr, 29 R, 61 T, 0 F, 32 Q 2022-11-14 21:57:23,140:INFO: START 30: extension1 1, 6 Thr, 30 R, 61 T, 0 F, 31 Q 2022-11-14 21:57:23,165:INFO: START 31: extension1 5, 6 Thr, 31 R, 61 T, 0 F, 30 Q 2022-11-14 21:57:23,201:INFO: START 32: extension1 3, 6 Thr, 32 R, 61 T, 0 F, 29 Q 2022-11-14 21:57:23,228:INFO: START 33: extension1 1, 6 Thr, 33 R, 61 T, 0 F, 28 Q 2022-11-14 21:57:23,252:INFO: START 34: extension1 5, 6 Thr, 34 R, 61 T, 0 F, 27 Q 2022-11-14 21:57:23,277:INFO: START 35: extension1 3, 6 Thr, 35 R, 61 T, 0 F, 26 Q 2022-11-14 21:57:23,301:INFO: START 36: extension1 5, 6 Thr, 36 R, 61 T, 0 F, 25 Q 2022-11-14 21:57:23,326:INFO: START 37: extension1 3, 6 Thr, 37 R, 61 T, 0 F, 24 Q 2022-11-14 21:57:23,352:INFO: START 38: extension1 5, 6 Thr, 38 R, 61 T, 0 F, 23 Q 2022-11-14 21:57:23,377:INFO: START 39: extension1 5, 6 Thr, 39 R, 61 T, 0 F, 22 Q 2022-11-14 21:57:23,401:INFO: START 40: extension1 5, 6 Thr, 40 R, 61 T, 0 F, 21 Q 2022-11-14 21:57:23,444:INFO: START 41: extension1 5, 6 Thr, 41 R, 61 T, 0 F, 20 Q 2022-11-14 21:57:23,477:INFO: START 42: extension1 5, 6 Thr, 42 R, 61 T, 0 F, 19 Q 2022-11-14 21:57:23,502:INFO: START 43: extension1 5, 6 Thr, 43 R, 61 T, 0 F, 18 Q 2022-11-14 21:57:23,536:INFO: START 44: extension1 5, 6 Thr, 44 R, 61 T, 0 F, 17 Q 2022-11-14 21:57:23,569:INFO: START 45: extension1 1, 6 Thr, 45 R, 61 T, 0 F, 16 Q 2022-11-14 21:57:23,603:INFO: START 46: extension1 1, 6 Thr, 46 R, 61 T, 0 F, 15 Q 2022-11-14 21:57:23,628:INFO: START 47: extension1 2, 6 Thr, 47 R, 61 T, 0 F, 14 Q 2022-11-14 21:57:23,655:INFO: START 48: extension1 2, 6 Thr, 48 R, 61 T, 0 F, 13 Q 2022-11-14 21:57:23,706:INFO: START 49: extension1 2, 6 Thr, 49 R, 61 T, 0 F, 12 Q 2022-11-14 21:57:23,740:INFO: START 50: extension1 2, 6 Thr, 50 R, 61 T, 0 F, 11 Q 2022-11-14 21:57:23,765:INFO: START 51: extension1 6, 6 Thr, 51 R, 61 T, 0 F, 10 Q 2022-11-14 21:57:23,804:INFO: START 52: extension1 4, 6 Thr, 52 R, 61 T, 0 F, 9 Q 2022-11-14 21:57:23,838:INFO: START 53: extension1 2, 6 Thr, 53 R, 61 T, 0 F, 8 Q 2022-11-14 21:57:23,864:INFO: START 54: extension1 4, 6 Thr, 54 R, 61 T, 0 F, 7 Q 2022-11-14 21:57:23,889:INFO: START 55: extension1 4, 6 Thr, 55 R, 61 T, 0 F, 6 Q 2022-11-14 21:57:23,914:INFO: START 56: extension1 4, 6 Thr, 56 R, 61 T, 0 F, 5 Q 2022-11-14 21:57:23,939:INFO: START 57: extension1 2, 6 Thr, 57 R, 61 T, 0 F, 4 Q 2022-11-14 21:57:23,963:INFO: START 58: extension1 4, 6 Thr, 58 R, 61 T, 0 F, 3 Q 2022-11-14 21:57:23,987:INFO: START 59: extension1 4, 6 Thr, 59 R, 61 T, 0 F, 2 Q 2022-11-14 21:57:24,053:INFO: START 60: extension1 2, 6 Thr, 60 R, 61 T, 0 F, 1 Q 2022-11-14 21:57:24,092:INFO: START 61: extension1 6, 6 Thr, 61 R, 61 T, 0 F, 0 Q 2022-11-14 21:57:24,772:INFO: STOP 1: extension1 , 56 Thr, 60 R, 61 T, 1 F, 0 Q TotalTime= 0h 0.04m RunTime= 0h 0.00m CPUload=100% bionano1a 2022-11-14 21:57:31,979:INFO: STOP 2: extension1 , 48 Thr, 59 R, 61 T, 2 F, 0 Q TotalTime= 0h 0.16m RunTime= 0h 0.01m CPUload=37% bionano1c 2022-11-14 21:59:12,216:INFO: STOP 50: extension1 2, 6 Thr, 58 R, 61 T, 3 F, 0 Q TotalTime= 0h 1.81m RunTime= 0h 1.67m CPUload=319% bionano1c 2022-11-14 21:59:23,979:INFO: STOP 29: extension1 1, 6 Thr, 57 R, 61 T, 4 F, 0 Q TotalTime= 0h 2.01m RunTime= 0h 1.89m CPUload=317% bionano1c 2022-11-14 21:59:53,033:INFO: STOP 20: extension1 1, 6 Thr, 56 R, 61 T, 5 F, 0 Q TotalTime= 0h 2.50m RunTime= 0h 2.45m CPUload=316% bionano1c 2022-11-14 22:00:10,560:INFO: STOP 3: extension1 , 6 Thr, 55 R, 61 T, 6 F, 0 Q TotalTime= 0h 2.80m RunTime= 0h 2.71m CPUload=260% bionano2c 2022-11-14 22:00:23,725:INFO: STOP 21: extension1 3, 6 Thr, 54 R, 61 T, 7 F, 0 Q TotalTime= 0h 3.01m RunTime= 0h 2.94m CPUload=78% saphyr1c 2022-11-14 22:00:37,220:INFO: STOP 42: extension1 5, 6 Thr, 53 R, 61 T, 8 F, 0 Q TotalTime= 0h 3.23m RunTime= 0h 3.06m CPUload=75% saphyr1c 2022-11-14 22:00:41,157:INFO: STOP 56: extension1 4, 6 Thr, 52 R, 61 T, 9 F, 0 Q TotalTime= 0h 3.29m RunTime= 0h 3.14m CPUload=309% bionano1c 2022-11-14 22:00:42,382:INFO: STOP 47: extension1 2, 6 Thr, 51 R, 61 T, 10 F, 0 Q TotalTime= 0h 3.31m RunTime= 0h 3.18m CPUload=357% bionano1c 2022-11-14 22:00:43,453:INFO: STOP 53: extension1 2, 6 Thr, 50 R, 61 T, 11 F, 0 Q TotalTime= 0h 3.33m RunTime= 0h 3.19m CPUload=323% bionano1c 2022-11-14 22:01:02,143:INFO: STOP 57: extension1 2, 6 Thr, 49 R, 61 T, 12 F, 0 Q TotalTime= 0h 3.64m RunTime= 0h 3.46m CPUload=220% saphyr1c 2022-11-14 22:01:13,883:INFO: STOP 7: extension1 , 6 Thr, 48 R, 61 T, 13 F, 0 Q TotalTime= 0h 3.86m RunTime= 0h 3.82m CPUload=285% saphyr1c 2022-11-14 22:01:13,930:INFO: STOP 60: extension1 2, 6 Thr, 47 R, 61 T, 14 F, 0 Q TotalTime= 0h 3.83m RunTime= 0h 3.65m CPUload=209% saphyr1c 2022-11-14 22:02:01,828:INFO: STOP 44: extension1 5, 6 Thr, 46 R, 61 T, 15 F, 0 Q TotalTime= 0h 4.64m RunTime= 0h 4.50m CPUload=345% bionano1c 2022-11-14 22:02:17,835:INFO: STOP 17: extension1 3, 6 Thr, 45 R, 61 T, 16 F, 0 Q TotalTime= 0h 4.92m RunTime= 0h 4.90m CPUload=382% bionano1c 2022-11-14 22:02:36,497:INFO: STOP 45: extension1 1, 6 Thr, 44 R, 61 T, 17 F, 0 Q TotalTime= 0h 5.22m RunTime= 0h 5.08m CPUload=240% saphyr1c 2022-11-14 22:02:39,133:INFO: STOP 23: extension1 4, 6 Thr, 43 R, 61 T, 18 F, 0 Q TotalTime= 0h 5.27m RunTime= 0h 5.22m CPUload=385% bionano1c 2022-11-14 22:02:57,714:INFO: STOP 11: extension1 , 6 Thr, 42 R, 61 T, 19 F, 0 Q TotalTime= 0h 5.59m RunTime= 0h 5.54m CPUload=280% saphyr1c 2022-11-14 22:03:11,649:INFO: STOP 49: extension1 2, 6 Thr, 41 R, 61 T, 20 F, 0 Q TotalTime= 0h 5.80m RunTime= 0h 5.63m CPUload=206% bionano2c 2022-11-14 22:03:14,147:INFO: STOP 18: extension1 4, 6 Thr, 40 R, 61 T, 21 F, 0 Q TotalTime= 0h 5.86m RunTime= 0h 5.78m CPUload=186% saphyr1c 2022-11-14 22:03:21,140:INFO: STOP 24: extension1 4, 6 Thr, 39 R, 61 T, 22 F, 0 Q TotalTime= 0h 5.97m RunTime= 0h 5.89m CPUload=203% saphyr1c 2022-11-14 22:03:26,097:INFO: STOP 51: extension1 6, 6 Thr, 38 R, 61 T, 23 F, 0 Q TotalTime= 0h 6.04m RunTime= 0h 5.90m CPUload=127% saphyr1c 2022-11-14 22:03:28,225:INFO: STOP 41: extension1 5, 6 Thr, 37 R, 61 T, 24 F, 0 Q TotalTime= 0h 6.08m RunTime= 0h 5.95m CPUload=432% bionano1c 2022-11-14 22:03:35,550:INFO: STOP 48: extension1 2, 6 Thr, 36 R, 61 T, 25 F, 0 Q TotalTime= 0h 6.20m RunTime= 0h 6.05m CPUload=308% saphyr1c 2022-11-14 22:03:37,401:INFO: STOP 12: extension1 1, 6 Thr, 35 R, 61 T, 26 F, 0 Q TotalTime= 0h 6.25m RunTime= 0h 6.18m CPUload=256% bionano2c 2022-11-14 22:03:37,414:INFO: STOP 9: extension1 , 6 Thr, 34 R, 61 T, 27 F, 0 Q TotalTime= 0h 6.25m RunTime= 0h 6.22m CPUload=322% saphyr1c 2022-11-14 22:03:49,240:INFO: STOP 35: extension1 3, 6 Thr, 33 R, 61 T, 28 F, 0 Q TotalTime= 0h 6.43m RunTime= 0h 6.30m CPUload=503% bionano1c 2022-11-14 22:04:00,402:INFO: STOP 59: extension1 4, 6 Thr, 32 R, 61 T, 29 F, 0 Q TotalTime= 0h 6.61m RunTime= 0h 6.50m CPUload=471% bionano1c 2022-11-14 22:04:02,661:INFO: STOP 32: extension1 3, 6 Thr, 31 R, 61 T, 30 F, 0 Q TotalTime= 0h 6.66m RunTime= 0h 6.53m CPUload=530% bionano1c 2022-11-14 22:04:13,905:INFO: STOP 33: extension1 1, 6 Thr, 30 R, 61 T, 31 F, 0 Q TotalTime= 0h 6.84m RunTime= 0h 6.76m CPUload=334% saphyr1c 2022-11-14 22:04:21,949:INFO: STOP 15: extension1 3, 6 Thr, 29 R, 61 T, 32 F, 0 Q TotalTime= 0h 6.99m RunTime= 0h 6.95m CPUload=303% saphyr1c 2022-11-14 22:04:23,146:INFO: STOP 30: extension1 1, 6 Thr, 28 R, 61 T, 33 F, 0 Q TotalTime= 0h 7.00m RunTime= 0h 6.90m CPUload=292% saphyr1c 2022-11-14 22:04:26,581:INFO: STOP 26: extension1 4, 6 Thr, 27 R, 61 T, 34 F, 0 Q TotalTime= 0h 7.06m RunTime= 0h 6.95m CPUload=532% bionano1c 2022-11-14 22:04:29,975:INFO: STOP 5: extension1 , 6 Thr, 26 R, 61 T, 35 F, 0 Q TotalTime= 0h 7.13m RunTime= 0h 7.09m CPUload=313% saphyr1c 2022-11-14 22:04:31,325:INFO: STOP 22: extension1 1, 6 Thr, 25 R, 61 T, 36 F, 0 Q TotalTime= 0h 7.14m RunTime= 0h 7.07m CPUload=240% bionano2c 2022-11-14 22:04:45,630:INFO: STOP 38: extension1 5, 6 Thr, 24 R, 61 T, 37 F, 0 Q TotalTime= 0h 7.37m RunTime= 0h 7.23m CPUload=601% bionano1c 2022-11-14 22:05:11,308:INFO: STOP 36: extension1 5, 6 Thr, 23 R, 61 T, 38 F, 0 Q TotalTime= 0h 7.80m RunTime= 0h 7.70m CPUload=289% saphyr1c 2022-11-14 22:05:13,145:INFO: STOP 16: extension1 1, 6 Thr, 22 R, 61 T, 39 F, 0 Q TotalTime= 0h 7.84m RunTime= 0h 7.79m CPUload=238% bionano2c 2022-11-14 22:05:25,259:INFO: STOP 13: extension1 2, 6 Thr, 21 R, 61 T, 40 F, 0 Q TotalTime= 0h 8.04m RunTime= 0h 8.01m CPUload=369% saphyr1c 2022-11-14 22:05:43,475:INFO: STOP 39: extension1 5, 6 Thr, 20 R, 61 T, 41 F, 0 Q TotalTime= 0h 8.33m RunTime= 0h 8.21m CPUload=400% saphyr1c 2022-11-14 22:05:52,406:INFO: STOP 25: extension1 1, 6 Thr, 19 R, 61 T, 42 F, 0 Q TotalTime= 0h 8.49m RunTime= 0h 8.40m CPUload=263% bionano2c 2022-11-14 22:05:59,965:INFO: STOP 28: extension1 3, 6 Thr, 18 R, 61 T, 43 F, 0 Q TotalTime= 0h 8.61m RunTime= 0h 8.51m CPUload=211% bionano2c 2022-11-14 22:06:17,415:INFO: STOP 54: extension1 4, 6 Thr, 17 R, 61 T, 44 F, 0 Q TotalTime= 0h 8.89m RunTime= 0h 8.77m CPUload=448% saphyr1c 2022-11-14 22:06:23,639:INFO: STOP 43: extension1 5, 6 Thr, 16 R, 61 T, 45 F, 0 Q TotalTime= 0h 9.00m RunTime= 0h 8.86m CPUload=168% bionano2c 2022-11-14 22:06:24,693:INFO: STOP 46: extension1 1, 6 Thr, 15 R, 61 T, 46 F, 0 Q TotalTime= 0h 9.02m RunTime= 0h 8.87m CPUload=254% bionano2c 2022-11-14 22:06:36,954:INFO: STOP 58: extension1 4, 6 Thr, 14 R, 61 T, 47 F, 0 Q TotalTime= 0h 9.22m RunTime= 0h 9.09m CPUload=143% bionano2c 2022-11-14 22:06:44,179:INFO: STOP 10: extension1 , 6 Thr, 13 R, 61 T, 48 F, 0 Q TotalTime= 0h 9.36m RunTime= 0h 9.31m CPUload=275% bionano2c 2022-11-14 22:07:01,342:INFO: STOP 61: extension1 6, 6 Thr, 12 R, 61 T, 49 F, 0 Q TotalTime= 0h 9.62m RunTime= 0h 9.45m CPUload=126% bionano2c 2022-11-14 22:07:07,351:INFO: STOP 52: extension1 4, 6 Thr, 11 R, 61 T, 50 F, 0 Q TotalTime= 0h 9.73m RunTime= 0h 9.60m CPUload=230% bionano2c 2022-11-14 22:07:27,610:INFO: STOP 27: extension1 3, 6 Thr, 10 R, 61 T, 51 F, 0 Q TotalTime= 0h 10.08m RunTime= 0h 9.97m CPUload=777% saphyr1c 2022-11-14 22:07:28,576:INFO: STOP 37: extension1 3, 6 Thr, 9 R, 61 T, 52 F, 0 Q TotalTime= 0h 10.09m RunTime= 0h 9.95m CPUload=230% bionano2c 2022-11-14 22:07:33,669:INFO: STOP 34: extension1 5, 6 Thr, 8 R, 61 T, 53 F, 0 Q TotalTime= 0h 10.17m RunTime= 0h 10.06m CPUload=222% bionano2c 2022-11-14 22:08:16,920:INFO: STOP 55: extension1 4, 6 Thr, 7 R, 61 T, 54 F, 0 Q TotalTime= 0h 10.88m RunTime= 0h 10.73m CPUload=282% bionano2c 2022-11-14 22:08:35,001:INFO: STOP 8: extension1 , 6 Thr, 6 R, 61 T, 55 F, 0 Q TotalTime= 0h 11.21m RunTime= 0h 11.16m CPUload=336% bionano2c 2022-11-14 22:09:00,225:INFO: STOP 4: extension1 2, 6 Thr, 5 R, 61 T, 56 F, 0 Q TotalTime= 0h 11.63m RunTime= 0h 11.59m CPUload=305% bionano2c 2022-11-14 22:09:13,277:INFO: STOP 14: extension1 3, 6 Thr, 4 R, 61 T, 57 F, 0 Q TotalTime= 0h 11.84m RunTime= 0h 11.79m CPUload=322% bionano2c 2022-11-14 22:09:36,411:INFO: STOP 31: extension1 5, 6 Thr, 3 R, 61 T, 58 F, 0 Q TotalTime= 0h 12.22m RunTime= 0h 12.13m CPUload=298% bionano2c 2022-11-14 22:09:39,468:INFO: STOP 40: extension1 5, 6 Thr, 2 R, 61 T, 59 F, 0 Q TotalTime= 0h 12.27m RunTime= 0h 12.14m CPUload=289% bionano2c 2022-11-14 22:09:52,540:INFO: STOP 19: extension1 3, 6 Thr, 1 R, 61 T, 60 F, 0 Q TotalTime= 0h 12.50m RunTime= 0h 12.46m CPUload=348% bionano2c 2022-11-14 22:09:58,591:INFO: STOP 6: extension1 2, 6 Thr, 0 R, 61 T, 61 F, 0 Q TotalTime= 0h 12.60m RunTime= 0h 12.57m CPUload=401% bionano2c 2022-11-14 22:09:58,591:INFO: Finished Multi-Threaded Process: extension1_1 2022-11-14 22:09:58,625:INFO: extension1 1 completed in: 2.5s Result Found extension1 2 completed in: 9.6s Result Found extension1 3 completed in: 168.2s Result Found extension1 27 completed in: 697.8s Result Found extension1 4 completed in: 427.5s Result Found extension1 28 completed in: 756.1s Result Found extension1 5 completed in: 231.4s Result Found extension1 6 completed in: 672.5s Result Found extension1 7 completed in: 374.9s Result Found extension1 8 completed in: 561.6s Result Found extension1 9 completed in: 335.1s Result Found extension1 10 completed in: 374.8s Result Found extension1 29 completed in: 482.6s Result Found extension1 30 completed in: 710.6s Result Found extension1 31 completed in: 419.2s Result Found extension1 11 completed in: 470.4s Result Found extension1 32 completed in: 295.1s Result Found extension1 46 completed in: 351.4s Result Found extension1 33 completed in: 749.7s Result Found extension1 12 completed in: 150.2s Result Found extension1 34 completed in: 180.8s Result Found extension1 13 completed in: 428.4s Result Found extension1 47 completed in: 316.2s Result Found extension1 48 completed in: 358.2s Result Found extension1 14 completed in: 509.4s Result Found extension1 49 completed in: 423.5s Result Found extension1 35 completed in: 604.5s Result Found extension1 36 completed in: 516.9s Result Found extension1 15 completed in: 120.9s Result Found extension1 16 completed in: 420.0s Result Found extension1 50 completed in: 733.2s Result Found extension1 37 completed in: 399.5s Result Found extension1 17 completed in: 410.7s Result Found extension1 51 completed in: 610.4s Result Found extension1 38 completed in: 386.0s Result Found extension1 52 completed in: 468.0s Result Found extension1 39 completed in: 605.2s Result Found extension1 53 completed in: 442.3s Result Found extension1 54 completed in: 500.1s Result Found extension1 55 completed in: 736.1s Result Found extension1 56 completed in: 364.8s Result Found extension1 57 completed in: 193.7s Result Found extension1 58 completed in: 540.1s Result Found extension1 59 completed in: 278.3s Result Found extension1 18 completed in: 312.9s Result Found extension1 19 completed in: 541.1s Result Found extension1 20 completed in: 198.8s Result Found extension1 21 completed in: 371.9s Result Found extension1 22 completed in: 347.9s Result Found extension1 23 completed in: 108.5s Result Found extension1 60 completed in: 362.3s Result Found extension1 40 completed in: 583.5s Result Found extension1 24 completed in: 199.6s Result Found extension1 41 completed in: 533.6s Result Found extension1 42 completed in: 653.0s Result Found extension1 43 completed in: 197.2s Result Found extension1 25 completed in: 218.2s Result Found extension1 44 completed in: 553.0s Result Found extension1 45 completed in: 396.4s Result Found extension1 26 completed in: 229.9s Result Found extension1 61 completed in: 577.2s Result Found Completed 61 jobs on 56 threads Clock time: 0h 12.61m CPU time : 6h 59.56m Begin machine parsable segment for: extension1_1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension1_1_contig112.cmap 2.46701 0.05 0.15 0:00.20 100% 120996 Mon Nov 14 16:10:27 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig111.cmap 9.64965 0.04 0.18 0:00.60 37% 120972 Mon Nov 14 16:10:27 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig1.cmap 168.19055 418.16 4.29 2:42.13 260% 1253496 Mon Nov 14 16:13:09 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig93.cmap 697.83065 2115.49 5.57 11:34.46 305% 821196 Mon Nov 14 16:22:02 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig6.cmap 427.54681 1325.77 5.91 7:04.62 313% 1074964 Mon Nov 14 16:20:55 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig54.cmap 756.13598 3016.03 7.70 12:32.58 401% 250100 Mon Nov 14 16:23:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig2.cmap 231.39908 642.38 11.18 3:49.25 285% 1553212 Mon Nov 14 16:17:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig13.cmap 672.48420 2244.10 5.75 11:09.29 336% 994964 Mon Nov 14 16:21:36 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig3.cmap 374.87132 1196.63 5.58 6:12.35 322% 1305276 Mon Nov 14 16:20:03 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig8.cmap 561.61077 1529.96 5.66 9:18.02 275% 1118960 Mon Nov 14 16:19:45 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig11.cmap 335.12117 926.65 4.24 5:32.19 280% 1007592 Mon Nov 14 16:19:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig7.cmap 374.78338 944.75 4.86 6:10.60 256% 1082820 Mon Nov 14 16:16:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig44.cmap 482.60653 1766.36 6.87 7:59.97 369% 658280 Mon Nov 14 16:21:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig53.cmap 710.59745 2270.66 6.22 11:47.10 322% 504888 Mon Nov 14 16:22:14 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig23.cmap 419.24462 1258.90 4.56 6:55.82 303% 769048 Mon Nov 14 16:20:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig5.cmap 470.41582 1103.34 8.71 7:46.60 238% 1320124 Mon Nov 14 16:18:14 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig73.cmap 295.06741 1118.88 3.10 4:53.04 382% 313364 Mon Nov 14 16:15:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig60.cmap 351.35097 643.62 1.91 5:47.01 186% 217824 Mon Nov 14 16:19:39 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig87.cmap 749.71836 2594.58 7.87 12:26.09 348% 289956 Mon Nov 14 16:22:54 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig4.cmap 150.18126 457.89 6.70 2:27.01 316% 1310896 Mon Nov 14 16:12:54 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig97.cmap 180.84871 136.18 1.20 2:55.31 78% 276628 Mon Nov 14 16:16:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig9.cmap 428.41591 1009.67 8.62 7:03.58 240% 1659904 Mon Nov 14 16:17:33 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig62.cmap 316.19837 1202.65 4.19 5:13.18 385% 256008 Mon Nov 14 16:15:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig41.cmap 358.17977 715.08 2.55 5:53.01 203% 329896 Mon Nov 14 16:19:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig80.cmap 509.42091 1323.78 2.46 8:24.00 263% 146616 Mon Nov 14 16:18:54 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig35.cmap 423.54336 2205.15 13.60 6:56.41 532% 309324 Mon Nov 14 16:17:28 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig91.cmap 604.54696 4571.27 78.88 9:57.92 777% 207592 Mon Nov 14 16:23:53 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig31.cmap 516.87704 1072.77 4.97 8:29.53 211% 1043788 Mon Nov 14 16:19:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig14.cmap 120.86372 354.79 4.04 1:53.08 317% 1395292 Mon Nov 14 16:12:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig12.cmap 420.00517 1200.07 8.04 6:53.05 292% 1617124 Mon Nov 14 16:20:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig58.cmap 733.24495 2162.34 6.29 12:05.66 298% 330180 Mon Nov 14 16:22:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig77.cmap 399.46033 2068.51 7.15 6:31.34 530% 169632 Mon Nov 14 16:17:03 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig10.cmap 410.67691 1350.36 4.82 6:44.58 334% 984712 Mon Nov 14 16:20:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig46.cmap 610.41691 1337.11 2.70 10:01.60 222% 330816 Mon Nov 14 16:20:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig42.cmap 385.96337 1895.78 5.58 6:17.76 503% 273636 Mon Nov 14 16:16:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig51.cmap 468.00654 1329.87 5.18 7:40.97 289% 220568 Mon Nov 14 16:21:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig37.cmap 605.24946 1369.34 3.47 9:56.32 230% 289680 Mon Nov 14 16:20:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig103.cmap 442.27818 2587.55 19.01 7:13.48 601% 163092 Mon Nov 14 16:17:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig82.cmap 500.09804 1963.53 7.92 8:12.68 400% 195360 Mon Nov 14 16:22:09 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig90.cmap 736.06665 2097.60 6.69 12:06.96 289% 161336 Mon Nov 14 16:22:41 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig74.cmap 364.78120 1536.88 4.76 5:56.65 432% 173208 Mon Nov 14 16:16:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig94.cmap 193.74334 137.00 0.70 3:01.73 75% 129676 Mon Nov 14 16:16:59 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig102.cmap 540.13615 890.66 1.95 8:50.25 168% 149852 Mon Nov 14 16:19:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig88.cmap 278.29189 928.61 2.90 4:29.54 345% 216204 Mon Nov 14 16:15:03 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig20.cmap 312.92742 727.18 3.64 5:03.32 240% 828548 Mon Nov 14 16:19:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig18.cmap 541.08913 1346.76 5.47 8:50.98 254% 1217400 Mon Nov 14 16:19:26 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig21.cmap 198.75401 677.84 3.12 3:10.53 357% 781352 Mon Nov 14 16:13:44 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig17.cmap 371.89466 1110.73 6.77 6:01.99 308% 1475048 Mon Nov 14 16:20:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig16.cmap 347.94199 691.75 4.14 5:36.58 206% 1239420 Mon Nov 14 16:16:12 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig15.cmap 108.47597 315.40 3.62 1:39.97 319% 1306784 Mon Nov 14 16:12:14 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig36.cmap 362.33191 447.10 2.24 5:53.74 127% 313552 Mon Nov 14 16:19:52 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig72.cmap 583.54666 1320.73 3.65 9:34.65 230% 663636 Mon Nov 14 16:20:10 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig19.cmap 199.61399 614.77 3.32 3:10.94 323% 829412 Mon Nov 14 16:13:45 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig96.cmap 533.55150 2345.59 10.72 8:44.95 448% 222276 Mon Nov 14 16:22:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig84.cmap 653.03117 1812.63 2.99 10:42.79 282% 204272 Mon Nov 14 16:21:19 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig29.cmap 197.24283 579.43 2.19 3:08.05 309% 536656 Mon Nov 14 16:13:42 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig24.cmap 218.20363 453.68 2.72 3:27.14 220% 728388 Mon Nov 14 16:17:26 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig45.cmap 552.99057 777.56 1.99 9:02.08 143% 200928 Mon Nov 14 16:19:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig61.cmap 396.41392 1829.89 5.74 6:29.02 471% 209808 Mon Nov 14 16:17:03 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig22.cmap 229.87590 454.41 2.71 3:38.51 209% 688872 Mon Nov 14 16:17:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_1_contig32.cmap 577.24948 711.63 2.66 9:26.34 126% 318184 Mon Nov 14 16:20:03 CST 2022 2022-11-14 22:09:58,625:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1 2022-11-14 22:09:58,626:INFO:Loaded 721 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1 2022-11-14 22:09:58,629:INFO:Found 106 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1 2022-11-14 22:09:58,629:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:09:58,630:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:09:58,631:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_extension1_1 2022-11-14 22:09:58,631:INFO:conda_env=None,conda_source=None 2022-11-14 22:09:58,631:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:09:58,656:INFO: START 1: mrg_exp_extensi, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:10:03,494:INFO: STOP 1: mrg_exp_extensi, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.08m RunTime= 0h 0.04m CPUload=184% saphyr1b 2022-11-14 22:10:03,494:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_extension1_1 2022-11-14 22:10:03,495:INFO: mrg_exp_extension1_1_0 completed in: 4.8s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.08m CPU time : 0h 0.08m Begin machine parsable segment for: Cmap_Merge_exp_extension1_1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_extension1_1_0 4.83745 3.97 0.59 0:02.47 184% 334376 Mon Nov 14 16:03:38 CST 2022 2022-11-14 22:10:04,665:INFO:Generating jobs for CharacterizeD_extension1_1 2022-11-14 22:10:04,665:INFO:CharacterizeD_extension1_1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1/EXP_EXTENSION1_1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1/alignref/EXP_EXTENSION1_1 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:10:04,667:INFO:Will NOT run Characterize extension1_1 due to -NoExtCharCheck 2022-11-14 22:10:04,667:INFO:************************* Executing stage 17: Merge1 ************************* 2022-11-14 22:10:04,667:INFO:Characterize extension1_1 results check completed 2022-11-14 22:10:04,668:INFO:Generating jobs for Merge1 2022-11-14 22:10:04,668:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1 2022-11-14 22:10:04,669:INFO:Loaded 725 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1 2022-11-14 22:10:04,670:INFO:Found 106 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1 2022-11-14 22:10:04,670:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1/mergeContigs.txt 2022-11-14 22:10:04,670:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1/mergeContigs.txt 2022-11-14 22:10:04,670:INFO:Merge1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1/exp_mrg1 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_1/mergeContigs.txt 2022-11-14 22:10:04,671:INFO:Running jobs for Merge1 2022-11-14 22:10:04,671:INFO: Starting Multi-Threaded Process: Merge1 2022-11-14 22:10:04,671:INFO:conda_env=None,conda_source=None 2022-11-14 22:10:04,671:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:10:04,688:INFO: START 1: Merge1, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:10:22,112:INFO: STOP 1: Merge1, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.29m RunTime= 0h 0.28m CPUload=1996% saphyr1a 2022-11-14 22:10:22,112:INFO: Finished Multi-Threaded Process: Merge1 2022-11-14 22:10:22,114:INFO: Merge1 completed in: 17.4s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.29m CPU time : 0h 0.29m Begin machine parsable segment for: Merge1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge1 17.42378 170.52 160.39 0:16.57 1996% 26840572 Mon Nov 14 16:10:21 CST 2022 2022-11-14 22:10:22,114:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1 2022-11-14 22:10:22,114:INFO:Loaded 94 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1 2022-11-14 22:10:22,116:INFO:Found 92 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1 2022-11-14 22:10:22,116:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:10:22,117:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:10:22,119:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg1 2022-11-14 22:10:22,119:INFO:conda_env=None,conda_source=None 2022-11-14 22:10:22,119:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:10:22,135:INFO: START 1: mrg_exp_mrg1_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:10:26,091:INFO: STOP 1: mrg_exp_mrg1_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.07m RunTime= 0h 0.03m CPUload=114% bionano2b 2022-11-14 22:10:26,091:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg1 2022-11-14 22:10:26,092:INFO: mrg_exp_mrg1_0 completed in: 4.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.07m CPU time : 0h 0.07m Begin machine parsable segment for: Cmap_Merge_exp_mrg1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg1_0 3.95522 1.44 0.32 0:01.55 114% 147796 Mon Nov 14 16:23:28 CST 2022 2022-11-14 22:10:27,247:INFO:Generating jobs for CharacterizeD_Merge1 2022-11-14 22:10:27,247:INFO:CharacterizeD_Merge1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1/EXP_MRG1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1/alignref/EXP_MRG1 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:10:27,247:INFO:Running jobs for CharacterizeD_Merge1 2022-11-14 22:10:27,248:INFO:************************* Executing stage 18: extension0_2 ************************* 2022-11-14 22:10:27,249:INFO:Starting stage extension0 2022-11-14 22:10:27,249:INFO:extension0 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:10:27,249:INFO:Generating Jobs for extension0, conf.extensionCount= 2 2022-11-14 22:10:27,249:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1 2022-11-14 22:10:27,250:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge1 2022-11-14 22:10:27,250:INFO:conda_env=None,conda_source=None 2022-11-14 22:10:27,250:INFO:Loaded 98 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1 2022-11-14 22:10:27,250:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:10:27,252:INFO:Found 92 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1 2022-11-14 22:10:27,252:INFO:computing modified weights for noES extension stage= extension0 2022-11-14 22:10:27,252:INFO:Calling contigComputeWeights with ExtensionNoES= True 2022-11-14 22:10:27,257:INFO: START 1: CharD_Merge1, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:10:27,283:INFO:Changing maxthreads from 56 to 48, TotThreads from 56 to 56 2022-11-14 22:10:27,283:INFO:MaxWeight = 180.00, witr= 0, threads= 48 (totThreads=56, minthreads=6, maxthreads=48), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_group_weights 2022-11-14 22:10:27,486:INFO:NumHostJobs= 4, TotalJobs= 52, HostWeight= 81.58214137119691, TargetWeight= 63.5698315806744, TotalWeight= 794.62289475843 2022-11-14 22:10:27,486:INFO:restoring maxthreads from 48 to 56, TotThreads from 56 to 56 2022-11-14 22:10:27,490:INFO:extension0_2 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg1/EXP_MRG1.cmap -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:10:27,491:INFO: Starting Multi-Threaded Process: extension0_2 2022-11-14 22:10:27,491:INFO:conda_env=None,conda_source=None 2022-11-14 22:10:27,491:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:10:27,508:INFO: START 1: extension0 , 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 22:10:27,543:INFO: START 2: extension0 , 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 22:10:27,575:INFO: START 3: extension0 , 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 22:10:27,602:INFO: START 4: extension0 , 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 22:10:27,634:INFO: START 5: extension0 , 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 22:10:27,666:INFO: START 6: extension0 , 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 22:10:27,698:INFO: START 7: extension0 , 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 22:10:27,728:INFO: START 8: extension0 , 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 22:10:27,756:INFO: START 9: extension0 , 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 22:10:27,781:INFO: START 10: extension0 1, 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 22:10:27,807:INFO: START 11: extension0 1, 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 22:10:27,843:INFO: START 12: extension0 1, 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 22:10:27,867:INFO: START 13: extension0 1, 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 22:10:27,892:INFO: START 14: extension0 1, 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 22:10:27,935:INFO: START 15: extension0 1, 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 22:10:27,960:INFO: START 16: extension0 1, 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 22:10:36,036:INFO: STOP 1: CharD_Merge1, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.15m RunTime= 0h 0.12m CPUload=1519% saphyr1a 2022-11-14 22:10:36,036:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge1 2022-11-14 22:10:36,037:INFO:Characterize Merge1 completed : will check Results 2022-11-14 22:10:36,038:INFO: CharD_Merge1 completed in: 8.8s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.15m CPU time : 0h 0.15m Begin machine parsable segment for: CharacterizeD_Merge1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge1 8.77875 97.94 9.24 0:07.05 1519% 1186544 Mon Nov 14 16:10:35 CST 2022 2022-11-14 22:10:37,345:INFO:Stage Summary: CharacterizeD_Merge1 Number Genome Maps: 92 Total Genome Map Length (Mbp): 1290.858 Mean Genome Map Length (Mbp): 14.031 Median Genome Map Length (Mbp): 2.341 Genome Map N50 (Mbp): 45.503 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.910 Total number of aligned Genome Maps : 1 (0.01) Total Aligned Length (Mbp) : 0.160 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.160 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 22:10:37,345:INFO:Characterize Merge1 results check completed 2022-11-14 22:12:06,159:INFO: STOP 16: extension0 1, 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 1.64m RunTime= 0h 1.61m CPUload=2252% saphyr1c 2022-11-14 22:12:13,224:INFO: STOP 13: extension0 1, 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 1.76m RunTime= 0h 1.70m CPUload=2131% bionano2d 2022-11-14 22:12:13,864:INFO: STOP 10: extension0 1, 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 1.77m RunTime= 0h 1.69m CPUload=2125% saphyr1d 2022-11-14 22:12:13,931:INFO: STOP 3: extension0 , 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 1.77m RunTime= 0h 1.73m CPUload=2084% saphyr1d 2022-11-14 22:12:14,501:INFO: STOP 12: extension0 1, 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.73m CPUload=2069% bionano1b 2022-11-14 22:12:14,503:INFO: STOP 11: extension0 1, 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.72m CPUload=2089% bionano1d 2022-11-14 22:12:14,548:INFO: STOP 5: extension0 , 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.74m CPUload=2073% bionano1b 2022-11-14 22:12:14,550:INFO: STOP 4: extension0 , 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.68m CPUload=2153% bionano1d 2022-11-14 22:12:15,021:INFO: STOP 14: extension0 1, 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.75m CPUload=2078% saphyr1c 2022-11-14 22:12:15,286:INFO: STOP 6: extension0 , 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.75m CPUload=2066% bionano2d 2022-11-14 22:12:18,246:INFO: STOP 7: extension0 , 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.80m CPUload=2000% bionano1c 2022-11-14 22:12:18,271:INFO: STOP 15: extension0 1, 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.80m CPUload=1960% bionano1c 2022-11-14 22:12:18,563:INFO: STOP 2: extension0 , 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 1.85m RunTime= 0h 1.81m CPUload=1985% bionano2b 2022-11-14 22:12:18,576:INFO: STOP 9: extension0 , 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 1.85m RunTime= 0h 1.81m CPUload=1982% bionano2b 2022-11-14 22:12:19,068:INFO: STOP 8: extension0 , 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 1.86m RunTime= 0h 1.81m CPUload=2013% saphyr1b 2022-11-14 22:12:19,070:INFO: STOP 1: extension0 , 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 1.86m RunTime= 0h 1.81m CPUload=1991% saphyr1b 2022-11-14 22:12:19,071:INFO: Finished Multi-Threaded Process: extension0_2 2022-11-14 22:12:19,074:INFO: extension0 1 completed in: 111.6s Result Found extension0 2 completed in: 111.0s Result Found extension0 3 completed in: 106.4s Result Found extension0 4 completed in: 106.9s Result Found extension0 5 completed in: 106.9s Result Found extension0 6 completed in: 107.6s Result Found extension0 7 completed in: 110.5s Result Found extension0 8 completed in: 111.3s Result Found extension0 9 completed in: 110.8s Result Found extension0 10 completed in: 106.1s Result Found extension0 11 completed in: 106.7s Result Found extension0 12 completed in: 106.7s Result Found extension0 13 completed in: 105.4s Result Found extension0 14 completed in: 107.1s Result Found extension0 15 completed in: 110.3s Result Found extension0 16 completed in: 98.2s Result Found Completed 16 jobs on 56 threads Clock time: 0h 1.86m CPU time : 0h 28.73m Begin machine parsable segment for: extension0_2 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension0_2_bnx1 111.56227 2136.32 30.89 1:48.83 1991% 2286536 Mon Nov 14 16:05:53 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx2 111.02008 2126.45 32.30 1:48.73 1985% 2287436 Mon Nov 14 16:25:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx3 106.35537 2131.48 31.88 1:43.76 2084% 2287352 Mon Nov 14 16:34:52 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx4 106.94740 2143.27 32.30 1:41.02 2153% 2284376 Mon Nov 14 16:25:13 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx5 106.91341 2139.18 31.21 1:44.66 2073% 2290892 Mon Nov 14 16:25:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx6 107.61994 2140.38 29.36 1:44.97 2066% 2289932 Mon Nov 14 16:25:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx7 110.54851 2131.42 32.57 1:48.16 2000% 2291064 Mon Nov 14 16:25:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx8 111.34023 2158.52 33.16 1:48.82 2013% 2296952 Mon Nov 14 16:05:53 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx9 110.82027 2125.28 30.57 1:48.72 1982% 2288164 Mon Nov 14 16:25:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx10 106.08265 2123.87 30.34 1:41.35 2125% 2281648 Mon Nov 14 16:34:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx11 106.69498 2126.45 28.63 1:43.16 2089% 2287564 Mon Nov 14 16:25:15 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx12 106.65787 2117.02 33.50 1:43.91 2069% 2285604 Mon Nov 14 16:25:15 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx13 105.35639 2145.95 31.73 1:42.16 2131% 2290824 Mon Nov 14 16:25:14 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx14 107.12831 2142.58 34.22 1:44.71 2078% 2292924 Mon Nov 14 16:28:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx15 110.33545 2090.82 30.04 1:48.17 1960% 2281772 Mon Nov 14 16:25:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_2_bnx16 98.19860 2143.31 29.44 1:36.47 2252% 2281156 Mon Nov 14 16:28:32 CST 2022 2022-11-14 22:12:19,074:INFO:************************* Executing stage 19: extension1_2 ************************* 2022-11-14 22:12:19,075:INFO:Starting stage extension1 2022-11-14 22:12:19,075:INFO:extension1 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:12:19,075:INFO:Generating Jobs for extension1, conf.extensionCount= 2 2022-11-14 22:12:19,076:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2 inputContigPrefix= exp_extension0_2 2022-11-14 22:12:19,087:INFO:extension1_2 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 6 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2/exp_extension1_2 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_group1 -f -stdout -stderr -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 3 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_2/exp_extension0_2_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:12:19,088:INFO: Starting Multi-Threaded Process: extension1_2 2022-11-14 22:12:19,088:INFO:conda_env=None,conda_source=None 2022-11-14 22:12:19,088:INFO: Running 52 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:12:19,188:INFO: START 1: extension1 , 56 Thr, 1 R, 52 T, 0 F, 51 Q 2022-11-14 22:12:19,212:INFO: START 2: extension1 2, 56 Thr, 2 R, 52 T, 0 F, 50 Q 2022-11-14 22:12:19,237:INFO: START 3: extension1 , 56 Thr, 3 R, 52 T, 0 F, 49 Q 2022-11-14 22:12:19,261:INFO: START 4: extension1 , 56 Thr, 4 R, 52 T, 0 F, 48 Q 2022-11-14 22:12:19,288:INFO: START 5: extension1 2, 6 Thr, 5 R, 52 T, 0 F, 47 Q 2022-11-14 22:12:19,313:INFO: START 6: extension1 , 6 Thr, 6 R, 52 T, 0 F, 46 Q 2022-11-14 22:12:19,343:INFO: START 7: extension1 , 6 Thr, 7 R, 52 T, 0 F, 45 Q 2022-11-14 22:12:19,368:INFO: START 8: extension1 , 6 Thr, 8 R, 52 T, 0 F, 44 Q 2022-11-14 22:12:19,393:INFO: START 9: extension1 , 6 Thr, 9 R, 52 T, 0 F, 43 Q 2022-11-14 22:12:19,418:INFO: START 10: extension1 , 6 Thr, 10 R, 52 T, 0 F, 42 Q 2022-11-14 22:12:19,444:INFO: START 11: extension1 2, 6 Thr, 11 R, 52 T, 0 F, 41 Q 2022-11-14 22:12:19,469:INFO: START 12: extension1 , 6 Thr, 12 R, 52 T, 0 F, 40 Q 2022-11-14 22:12:19,520:INFO: START 13: extension1 2, 6 Thr, 13 R, 52 T, 0 F, 39 Q 2022-11-14 22:12:19,545:INFO: START 14: extension1 1, 6 Thr, 14 R, 52 T, 0 F, 38 Q 2022-11-14 22:12:19,570:INFO: START 15: extension1 2, 6 Thr, 15 R, 52 T, 0 F, 37 Q 2022-11-14 22:12:19,599:INFO: START 16: extension1 4, 6 Thr, 16 R, 52 T, 0 F, 36 Q 2022-11-14 22:12:19,625:INFO: START 17: extension1 2, 6 Thr, 17 R, 52 T, 0 F, 35 Q 2022-11-14 22:12:19,650:INFO: START 18: extension1 4, 6 Thr, 18 R, 52 T, 0 F, 34 Q 2022-11-14 22:12:19,675:INFO: START 19: extension1 3, 6 Thr, 19 R, 52 T, 0 F, 33 Q 2022-11-14 22:12:19,700:INFO: START 20: extension1 1, 6 Thr, 20 R, 52 T, 0 F, 32 Q 2022-11-14 22:12:19,725:INFO: START 21: extension1 3, 6 Thr, 21 R, 52 T, 0 F, 31 Q 2022-11-14 22:12:19,750:INFO: START 22: extension1 1, 6 Thr, 22 R, 52 T, 0 F, 30 Q 2022-11-14 22:12:19,794:INFO: START 23: extension1 4, 6 Thr, 23 R, 52 T, 0 F, 29 Q 2022-11-14 22:12:19,818:INFO: START 24: extension1 1, 6 Thr, 24 R, 52 T, 0 F, 28 Q 2022-11-14 22:12:19,843:INFO: START 25: extension1 4, 6 Thr, 25 R, 52 T, 0 F, 27 Q 2022-11-14 22:12:19,868:INFO: START 26: extension1 4, 6 Thr, 26 R, 52 T, 0 F, 26 Q 2022-11-14 22:12:19,893:INFO: START 27: extension1 3, 6 Thr, 27 R, 52 T, 0 F, 25 Q 2022-11-14 22:12:19,917:INFO: START 28: extension1 1, 6 Thr, 28 R, 52 T, 0 F, 24 Q 2022-11-14 22:12:19,942:INFO: START 29: extension1 4, 6 Thr, 29 R, 52 T, 0 F, 23 Q 2022-11-14 22:12:19,967:INFO: START 30: extension1 1, 6 Thr, 30 R, 52 T, 0 F, 22 Q 2022-11-14 22:12:19,992:INFO: START 31: extension1 4, 6 Thr, 31 R, 52 T, 0 F, 21 Q 2022-11-14 22:12:20,040:INFO: START 32: extension1 1, 6 Thr, 32 R, 52 T, 0 F, 20 Q 2022-11-14 22:12:20,066:INFO: START 33: extension1 3, 6 Thr, 33 R, 52 T, 0 F, 19 Q 2022-11-14 22:12:20,091:INFO: START 34: extension1 4, 6 Thr, 34 R, 52 T, 0 F, 18 Q 2022-11-14 22:12:20,116:INFO: START 35: extension1 1, 6 Thr, 35 R, 52 T, 0 F, 17 Q 2022-11-14 22:12:20,141:INFO: START 36: extension1 3, 6 Thr, 36 R, 52 T, 0 F, 16 Q 2022-11-14 22:12:20,165:INFO: START 37: extension1 3, 6 Thr, 37 R, 52 T, 0 F, 15 Q 2022-11-14 22:12:20,200:INFO: START 38: extension1 4, 6 Thr, 38 R, 52 T, 0 F, 14 Q 2022-11-14 22:12:20,224:INFO: START 39: extension1 1, 6 Thr, 39 R, 52 T, 0 F, 13 Q 2022-11-14 22:12:20,249:INFO: START 40: extension1 1, 6 Thr, 40 R, 52 T, 0 F, 12 Q 2022-11-14 22:12:20,274:INFO: START 41: extension1 4, 6 Thr, 41 R, 52 T, 0 F, 11 Q 2022-11-14 22:12:20,298:INFO: START 42: extension1 2, 6 Thr, 42 R, 52 T, 0 F, 10 Q 2022-11-14 22:12:20,323:INFO: START 43: extension1 2, 6 Thr, 43 R, 52 T, 0 F, 9 Q 2022-11-14 22:12:20,348:INFO: START 44: extension1 3, 6 Thr, 44 R, 52 T, 0 F, 8 Q 2022-11-14 22:12:20,374:INFO: START 45: extension1 2, 6 Thr, 45 R, 52 T, 0 F, 7 Q 2022-11-14 22:12:20,408:INFO: START 46: extension1 3, 6 Thr, 46 R, 52 T, 0 F, 6 Q 2022-11-14 22:12:20,451:INFO: START 47: extension1 5, 6 Thr, 47 R, 52 T, 0 F, 5 Q 2022-11-14 22:12:20,484:INFO: START 48: extension1 3, 6 Thr, 48 R, 52 T, 0 F, 4 Q 2022-11-14 22:12:20,509:INFO: START 49: extension1 2, 6 Thr, 49 R, 52 T, 0 F, 3 Q 2022-11-14 22:12:20,535:INFO: START 50: extension1 5, 6 Thr, 50 R, 52 T, 0 F, 2 Q 2022-11-14 22:12:20,569:INFO: START 51: extension1 3, 6 Thr, 51 R, 52 T, 0 F, 1 Q 2022-11-14 22:12:20,670:INFO: START 52: extension1 5, 6 Thr, 52 R, 52 T, 0 F, 0 Q 2022-11-14 22:12:29,704:INFO: STOP 5: extension1 2, 6 Thr, 51 R, 52 T, 1 F, 0 Q TotalTime= 0h 0.17m RunTime= 0h 0.12m CPUload=141% bionano2b 2022-11-14 22:12:30,090:INFO: STOP 21: extension1 3, 6 Thr, 50 R, 52 T, 2 F, 0 Q TotalTime= 0h 0.17m RunTime= 0h 0.11m CPUload=153% saphyr1d 2022-11-14 22:12:31,463:INFO: STOP 46: extension1 3, 6 Thr, 49 R, 52 T, 3 F, 0 Q TotalTime= 0h 0.18m RunTime= 0h 0.12m CPUload=320% bionano1b 2022-11-14 22:12:33,843:INFO: STOP 25: extension1 4, 6 Thr, 48 R, 52 T, 4 F, 0 Q TotalTime= 0h 0.23m RunTime= 0h 0.14m CPUload=202% bionano2b 2022-11-14 22:12:33,923:INFO: STOP 16: extension1 4, 6 Thr, 47 R, 52 T, 5 F, 0 Q TotalTime= 0h 0.24m RunTime= 0h 0.17m CPUload=203% bionano2b 2022-11-14 22:12:42,887:INFO: STOP 3: extension1 , 56 Thr, 46 R, 52 T, 6 F, 0 Q TotalTime= 0h 0.39m RunTime= 0h 0.37m CPUload=1264% bionano1a 2022-11-14 22:12:46,972:INFO: STOP 1: extension1 , 56 Thr, 45 R, 52 T, 7 F, 0 Q TotalTime= 0h 0.46m RunTime= 0h 0.43m CPUload=1381% bionano1a 2022-11-14 22:12:49,216:INFO: STOP 2: extension1 2, 56 Thr, 44 R, 52 T, 8 F, 0 Q TotalTime= 0h 0.50m RunTime= 0h 0.46m CPUload=1390% bionano2a 2022-11-14 22:12:50,339:INFO: STOP 26: extension1 4, 6 Thr, 43 R, 52 T, 9 F, 0 Q TotalTime= 0h 0.51m RunTime= 0h 0.45m CPUload=417% saphyr1d 2022-11-14 22:12:57,643:INFO: STOP 4: extension1 , 56 Thr, 42 R, 52 T, 10 F, 0 Q TotalTime= 0h 0.64m RunTime= 0h 0.61m CPUload=1497% bionano2a 2022-11-14 22:13:08,652:INFO: STOP 19: extension1 3, 6 Thr, 41 R, 52 T, 11 F, 0 Q TotalTime= 0h 0.82m RunTime= 0h 0.73m CPUload=250% saphyr1b 2022-11-14 22:13:12,588:INFO: STOP 34: extension1 4, 6 Thr, 40 R, 52 T, 12 F, 0 Q TotalTime= 0h 0.87m RunTime= 0h 0.73m CPUload=384% saphyr1b 2022-11-14 22:13:16,607:INFO: STOP 29: extension1 4, 6 Thr, 39 R, 52 T, 13 F, 0 Q TotalTime= 0h 0.94m RunTime= 0h 0.84m CPUload=424% saphyr1b 2022-11-14 22:13:23,181:INFO: STOP 13: extension1 2, 6 Thr, 38 R, 52 T, 14 F, 0 Q TotalTime= 0h 1.06m RunTime= 0h 1.02m CPUload=542% bionano1b 2022-11-14 22:13:24,311:INFO: STOP 31: extension1 4, 6 Thr, 37 R, 52 T, 15 F, 0 Q TotalTime= 0h 1.07m RunTime= 0h 1.03m CPUload=495% saphyr1d 2022-11-14 22:13:25,346:INFO: STOP 50: extension1 5, 6 Thr, 36 R, 52 T, 16 F, 0 Q TotalTime= 0h 1.08m RunTime= 0h 0.89m CPUload=256% bionano2b 2022-11-14 22:13:26,648:INFO: STOP 37: extension1 3, 6 Thr, 35 R, 52 T, 17 F, 0 Q TotalTime= 0h 1.11m RunTime= 0h 0.97m CPUload=504% saphyr1d 2022-11-14 22:13:31,082:INFO: STOP 41: extension1 4, 6 Thr, 34 R, 52 T, 18 F, 0 Q TotalTime= 0h 1.18m RunTime= 0h 1.10m CPUload=531% bionano1b 2022-11-14 22:13:32,100:INFO: STOP 52: extension1 5, 6 Thr, 33 R, 52 T, 19 F, 0 Q TotalTime= 0h 1.19m RunTime= 0h 1.04m CPUload=501% saphyr1d 2022-11-14 22:13:32,600:INFO: STOP 35: extension1 1, 6 Thr, 32 R, 52 T, 20 F, 0 Q TotalTime= 0h 1.21m RunTime= 0h 1.06m CPUload=440% bionano2b 2022-11-14 22:13:35,585:INFO: STOP 10: extension1 , 6 Thr, 31 R, 52 T, 21 F, 0 Q TotalTime= 0h 1.27m RunTime= 0h 1.22m CPUload=408% bionano1d 2022-11-14 22:13:41,857:INFO: STOP 44: extension1 3, 6 Thr, 30 R, 52 T, 22 F, 0 Q TotalTime= 0h 1.36m RunTime= 0h 1.21m CPUload=461% saphyr1b 2022-11-14 22:13:49,425:INFO: STOP 43: extension1 2, 6 Thr, 29 R, 52 T, 23 F, 0 Q TotalTime= 0h 1.49m RunTime= 0h 1.35m CPUload=392% bionano1d 2022-11-14 22:13:49,515:INFO: STOP 28: extension1 1, 6 Thr, 28 R, 52 T, 24 F, 0 Q TotalTime= 0h 1.49m RunTime= 0h 1.43m CPUload=408% bionano1d 2022-11-14 22:13:56,228:INFO: STOP 42: extension1 2, 6 Thr, 27 R, 52 T, 25 F, 0 Q TotalTime= 0h 1.60m RunTime= 0h 1.46m CPUload=542% saphyr1d 2022-11-14 22:13:57,079:INFO: STOP 49: extension1 2, 6 Thr, 26 R, 52 T, 26 F, 0 Q TotalTime= 0h 1.61m RunTime= 0h 1.47m CPUload=463% saphyr1b 2022-11-14 22:14:10,710:INFO: STOP 20: extension1 1, 6 Thr, 25 R, 52 T, 27 F, 0 Q TotalTime= 0h 1.85m RunTime= 0h 1.78m CPUload=417% bionano2b 2022-11-14 22:14:17,752:INFO: STOP 45: extension1 2, 6 Thr, 24 R, 52 T, 28 F, 0 Q TotalTime= 0h 1.96m RunTime= 0h 1.78m CPUload=528% bionano2b 2022-11-14 22:14:19,873:INFO: STOP 40: extension1 1, 6 Thr, 23 R, 52 T, 29 F, 0 Q TotalTime= 0h 1.99m RunTime= 0h 1.85m CPUload=520% bionano2b 2022-11-14 22:14:22,148:INFO: STOP 47: extension1 5, 6 Thr, 22 R, 52 T, 30 F, 0 Q TotalTime= 0h 2.03m RunTime= 0h 1.88m CPUload=649% saphyr1d 2022-11-14 22:14:26,629:INFO: STOP 18: extension1 4, 6 Thr, 21 R, 52 T, 31 F, 0 Q TotalTime= 0h 2.12m RunTime= 0h 2.06m CPUload=472% bionano1d 2022-11-14 22:14:38,806:INFO: STOP 33: extension1 3, 6 Thr, 20 R, 52 T, 32 F, 0 Q TotalTime= 0h 2.31m RunTime= 0h 2.16m CPUload=478% bionano1d 2022-11-14 22:14:46,759:INFO: STOP 38: extension1 4, 6 Thr, 19 R, 52 T, 33 F, 0 Q TotalTime= 0h 2.44m RunTime= 0h 2.31m CPUload=476% bionano1d 2022-11-14 22:14:47,868:INFO: STOP 23: extension1 4, 6 Thr, 18 R, 52 T, 34 F, 0 Q TotalTime= 0h 2.47m RunTime= 0h 2.41m CPUload=512% bionano1d 2022-11-14 22:14:51,920:INFO: STOP 9: extension1 , 6 Thr, 17 R, 52 T, 35 F, 0 Q TotalTime= 0h 2.54m RunTime= 0h 2.49m CPUload=593% bionano2b 2022-11-14 22:14:54,981:INFO: STOP 48: extension1 3, 6 Thr, 16 R, 52 T, 36 F, 0 Q TotalTime= 0h 2.57m RunTime= 0h 2.44m CPUload=546% bionano1d 2022-11-14 22:15:01,375:INFO: STOP 36: extension1 3, 6 Thr, 15 R, 52 T, 37 F, 0 Q TotalTime= 0h 2.69m RunTime= 0h 2.63m CPUload=628% bionano1b 2022-11-14 22:15:08,032:INFO: STOP 12: extension1 , 6 Thr, 14 R, 52 T, 38 F, 0 Q TotalTime= 0h 2.81m RunTime= 0h 2.76m CPUload=599% bionano2b 2022-11-14 22:15:12,885:INFO: STOP 15: extension1 2, 6 Thr, 13 R, 52 T, 39 F, 0 Q TotalTime= 0h 2.89m RunTime= 0h 2.75m CPUload=679% saphyr1b 2022-11-14 22:15:13,950:INFO: STOP 39: extension1 1, 6 Thr, 12 R, 52 T, 40 F, 0 Q TotalTime= 0h 2.90m RunTime= 0h 2.67m CPUload=652% saphyr1b 2022-11-14 22:15:14,989:INFO: STOP 6: extension1 , 6 Thr, 11 R, 52 T, 41 F, 0 Q TotalTime= 0h 2.93m RunTime= 0h 2.88m CPUload=644% bionano2b 2022-11-14 22:15:15,388:INFO: STOP 27: extension1 3, 6 Thr, 10 R, 52 T, 42 F, 0 Q TotalTime= 0h 2.92m RunTime= 0h 2.89m CPUload=683% bionano1b 2022-11-14 22:15:16,043:INFO: STOP 30: extension1 1, 6 Thr, 9 R, 52 T, 43 F, 0 Q TotalTime= 0h 2.93m RunTime= 0h 2.82m CPUload=645% bionano2b 2022-11-14 22:15:16,045:INFO: STOP 24: extension1 1, 6 Thr, 8 R, 52 T, 44 F, 0 Q TotalTime= 0h 2.94m RunTime= 0h 2.83m CPUload=576% saphyr1b 2022-11-14 22:15:20,458:INFO: STOP 17: extension1 2, 6 Thr, 7 R, 52 T, 45 F, 0 Q TotalTime= 0h 3.01m RunTime= 0h 2.97m CPUload=636% bionano1b 2022-11-14 22:15:22,318:INFO: STOP 14: extension1 1, 6 Thr, 6 R, 52 T, 46 F, 0 Q TotalTime= 0h 3.05m RunTime= 0h 2.99m CPUload=543% bionano1d 2022-11-14 22:15:24,243:INFO: STOP 11: extension1 2, 6 Thr, 5 R, 52 T, 47 F, 0 Q TotalTime= 0h 3.08m RunTime= 0h 3.01m CPUload=697% saphyr1b 2022-11-14 22:15:28,574:INFO: STOP 51: extension1 3, 6 Thr, 4 R, 52 T, 48 F, 0 Q TotalTime= 0h 3.13m RunTime= 0h 3.07m CPUload=745% bionano1b 2022-11-14 22:15:29,305:INFO: STOP 8: extension1 , 6 Thr, 3 R, 52 T, 49 F, 0 Q TotalTime= 0h 3.17m RunTime= 0h 3.10m CPUload=689% saphyr1b 2022-11-14 22:15:29,550:INFO: STOP 32: extension1 1, 6 Thr, 2 R, 52 T, 50 F, 0 Q TotalTime= 0h 3.16m RunTime= 0h 3.09m CPUload=672% bionano1b 2022-11-14 22:15:33,569:INFO: STOP 22: extension1 1, 6 Thr, 1 R, 52 T, 51 F, 0 Q TotalTime= 0h 3.23m RunTime= 0h 3.20m CPUload=660% bionano1b 2022-11-14 22:15:39,530:INFO: STOP 7: extension1 , 6 Thr, 0 R, 52 T, 52 F, 0 Q TotalTime= 0h 3.34m RunTime= 0h 3.28m CPUload=654% bionano1d 2022-11-14 22:15:39,530:INFO: Finished Multi-Threaded Process: extension1_2 2022-11-14 22:15:39,550:INFO: extension1 1 completed in: 27.8s Result Found extension1 24 completed in: 30.0s Result Found extension1 2 completed in: 23.7s Result Found extension1 3 completed in: 38.4s Result Found extension1 25 completed in: 10.4s Result Found extension1 4 completed in: 175.7s Result Found extension1 5 completed in: 200.2s Result Found extension1 6 completed in: 189.9s Result Found extension1 7 completed in: 152.5s Result Found extension1 8 completed in: 76.2s Result Found extension1 26 completed in: 184.8s Result Found extension1 9 completed in: 168.6s Result Found extension1 27 completed in: 63.7s Result Found extension1 10 completed in: 182.8s Result Found extension1 28 completed in: 173.3s Result Found extension1 40 completed in: 14.3s Result Found extension1 29 completed in: 180.8s Result Found extension1 41 completed in: 127.0s Result Found extension1 30 completed in: 49.0s Result Found extension1 11 completed in: 111.0s Result Found extension1 31 completed in: 10.4s Result Found extension1 12 completed in: 193.8s Result Found extension1 42 completed in: 148.1s Result Found extension1 13 completed in: 176.2s Result Found extension1 43 completed in: 14.0s Result Found extension1 44 completed in: 30.5s Result Found extension1 32 completed in: 175.5s Result Found extension1 14 completed in: 89.6s Result Found extension1 45 completed in: 56.7s Result Found extension1 15 completed in: 176.1s Result Found extension1 46 completed in: 64.3s Result Found extension1 16 completed in: 189.5s Result Found extension1 33 completed in: 138.7s Result Found extension1 47 completed in: 52.5s Result Found extension1 17 completed in: 72.5s Result Found extension1 34 completed in: 161.2s Result Found extension1 35 completed in: 66.5s Result Found extension1 48 completed in: 146.6s Result Found extension1 18 completed in: 173.7s Result Found extension1 19 completed in: 119.6s Result Found extension1 49 completed in: 70.8s Result Found extension1 20 completed in: 95.9s Result Found extension1 21 completed in: 89.1s Result Found extension1 36 completed in: 81.5s Result Found extension1 22 completed in: 117.4s Result Found extension1 37 completed in: 11.1s Result Found extension1 50 completed in: 121.7s Result Found extension1 38 completed in: 154.5s Result Found extension1 23 completed in: 96.6s Result Found extension1 51 completed in: 64.8s Result Found extension1 39 completed in: 188.0s Result Found extension1 52 completed in: 71.4s Result Found Completed 52 jobs on 56 threads Clock time: 0h 3.34m CPU time : 1h 33.31m Begin machine parsable segment for: extension1_2 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension1_2_contig1.cmap 27.78416 354.68 4.94 0:26.02 1381% 1304760 Mon Nov 14 16:25:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig91.cmap 30.00334 366.78 17.41 0:27.63 1390% 819672 Mon Nov 14 16:25:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig5.cmap 23.65008 273.08 4.37 0:21.94 1264% 1076124 Mon Nov 14 16:25:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig2.cmap 38.38140 543.00 7.20 0:36.73 1497% 2364912 Mon Nov 14 16:26:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig89.cmap 10.41594 9.51 0.56 0:07.10 141% 185916 Mon Nov 14 16:25:31 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig3.cmap 175.67550 1104.95 6.93 2:52.52 644% 1304896 Mon Nov 14 16:28:17 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig15.cmap 200.18677 1279.15 8.84 3:16.83 654% 1007128 Mon Nov 14 16:28:41 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig9.cmap 189.93679 1272.96 8.14 3:05.69 689% 1126632 Mon Nov 14 16:09:04 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig8.cmap 152.52693 881.73 4.86 2:29.47 593% 1082952 Mon Nov 14 16:27:54 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig13.cmap 76.16637 295.88 2.79 1:13.10 408% 1031200 Mon Nov 14 16:26:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig28.cmap 184.79959 1249.48 10.35 3:00.56 697% 564996 Mon Nov 14 16:08:59 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig7.cmap 168.56276 984.05 7.97 2:45.48 599% 1471256 Mon Nov 14 16:28:10 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig52.cmap 63.66101 331.36 1.59 1:01.35 542% 312704 Mon Nov 14 16:26:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig6.cmap 182.77284 966.07 8.44 2:59.21 543% 1320180 Mon Nov 14 16:28:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig76.cmap 173.31567 1114.91 4.39 2:44.82 679% 248864 Mon Nov 14 16:08:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig42.cmap 14.32411 19.94 0.68 0:10.11 203% 315160 Mon Nov 14 16:25:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig36.cmap 180.83328 1128.84 4.72 2:58.17 636% 321628 Mon Nov 14 16:28:22 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig88.cmap 126.97897 580.15 2.35 2:03.30 472% 255236 Mon Nov 14 16:27:28 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig85.cmap 48.97702 107.94 1.66 0:43.77 250% 276924 Mon Nov 14 16:06:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig4.cmap 111.00939 438.76 5.76 1:46.45 417% 1310712 Mon Nov 14 16:27:12 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig86.cmap 10.36535 9.27 0.54 0:06.39 153% 184880 Mon Nov 14 16:35:07 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig17.cmap 193.81852 1259.97 5.88 3:11.79 660% 953460 Mon Nov 14 16:28:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig57.cmap 148.07472 735.37 3.78 2:24.22 512% 223180 Mon Nov 14 16:27:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig11.cmap 176.22656 968.89 8.91 2:49.65 576% 1659712 Mon Nov 14 16:08:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig50.cmap 13.99984 15.79 0.68 0:08.12 202% 311944 Mon Nov 14 16:25:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig32.cmap 30.47114 111.26 1.50 0:27.00 417% 329572 Mon Nov 14 16:35:28 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig75.cmap 175.49515 1177.98 4.42 2:53.11 683% 791068 Mon Nov 14 16:28:17 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig16.cmap 89.59752 345.80 3.77 1:25.54 408% 1394876 Mon Nov 14 16:26:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig63.cmap 56.66453 212.81 1.78 0:50.56 424% 326636 Mon Nov 14 16:06:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig14.cmap 176.07597 1082.04 9.03 2:49.10 645% 1617052 Mon Nov 14 16:28:17 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig80.cmap 64.31898 304.29 2.11 1:01.80 495% 320088 Mon Nov 14 16:36:02 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig12.cmap 189.50970 1242.95 4.77 3:05.64 672% 992584 Mon Nov 14 16:28:31 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig29.cmap 138.74030 617.20 3.56 2:09.86 478% 517908 Mon Nov 14 16:27:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig47.cmap 52.49730 165.70 1.88 0:43.54 384% 340848 Mon Nov 14 16:06:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig10.cmap 72.48401 277.95 2.60 1:03.63 440% 1093964 Mon Nov 14 16:26:34 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig34.cmap 161.23450 987.95 2.87 2:37.61 628% 289424 Mon Nov 14 16:28:03 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig81.cmap 66.48203 291.02 2.00 0:58.02 504% 251176 Mon Nov 14 16:36:05 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig92.cmap 146.55924 656.39 3.55 2:18.51 476% 145976 Mon Nov 14 16:27:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig20.cmap 173.72525 1036.29 7.44 2:39.99 652% 1475200 Mon Nov 14 16:08:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig22.cmap 119.62310 574.02 3.44 1:51.01 520% 781468 Mon Nov 14 16:27:21 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig59.cmap 70.80799 350.12 1.59 1:06.18 531% 195848 Mon Nov 14 16:26:32 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig19.cmap 95.92928 469.33 3.90 1:27.16 542% 1239496 Mon Nov 14 16:36:34 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig18.cmap 89.10185 313.29 3.64 1:20.72 392% 1307560 Mon Nov 14 16:26:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig26.cmap 81.50894 332.31 2.49 1:12.55 461% 694352 Mon Nov 14 16:07:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig21.cmap 117.37710 560.58 3.26 1:46.78 528% 829936 Mon Nov 14 16:27:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig72.cmap 11.05429 22.29 0.55 0:07.12 320% 272576 Mon Nov 14 16:25:33 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig68.cmap 121.69646 727.47 5.13 1:52.83 649% 317472 Mon Nov 14 16:37:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig27.cmap 154.49653 793.91 3.85 2:26.07 546% 540992 Mon Nov 14 16:27:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig23.cmap 96.56909 406.12 3.03 1:28.33 463% 728136 Mon Nov 14 16:07:32 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig51.cmap 64.81095 135.81 1.64 0:53.64 256% 215792 Mon Nov 14 16:26:27 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig74.cmap 188.00448 1368.82 4.21 3:04.18 745% 211060 Mon Nov 14 16:28:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_2_contig30.cmap 71.43023 311.15 1.91 1:02.41 501% 210352 Mon Nov 14 16:36:10 CST 2022 2022-11-14 22:15:39,550:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2 2022-11-14 22:15:39,551:INFO:Loaded 604 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2 2022-11-14 22:15:39,553:INFO:Found 92 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2 2022-11-14 22:15:39,553:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:15:39,554:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:15:39,555:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_extension1_2 2022-11-14 22:15:39,555:INFO:conda_env=None,conda_source=None 2022-11-14 22:15:39,555:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:15:39,911:INFO: START 1: mrg_exp_extensi, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:15:44,165:INFO: STOP 1: mrg_exp_extensi, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.07m RunTime= 0h 0.04m CPUload=184% bionano2d 2022-11-14 22:15:44,166:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_extension1_2 2022-11-14 22:15:44,166:INFO: mrg_exp_extension1_2_0 completed in: 4.3s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.08m CPU time : 0h 0.07m Begin machine parsable segment for: Cmap_Merge_exp_extension1_2 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_extension1_2_0 4.25389 3.81 0.43 0:02.30 184% 302444 Mon Nov 14 16:28:46 CST 2022 2022-11-14 22:15:45,354:INFO:Generating jobs for CharacterizeD_extension1_2 2022-11-14 22:15:45,354:INFO:CharacterizeD_extension1_2 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2/EXP_EXTENSION1_2.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2/alignref/EXP_EXTENSION1_2 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:15:45,356:INFO:Will NOT run Characterize extension1_2 due to -NoExtCharCheck 2022-11-14 22:15:45,356:INFO:************************* Executing stage 20: Merge2 ************************* 2022-11-14 22:15:45,356:INFO:Characterize extension1_2 results check completed 2022-11-14 22:15:45,357:INFO:Generating jobs for Merge2 2022-11-14 22:15:45,357:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2 2022-11-14 22:15:45,357:INFO:Loaded 608 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2 2022-11-14 22:15:45,359:INFO:Found 92 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2 2022-11-14 22:15:45,359:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2/mergeContigs.txt 2022-11-14 22:15:45,359:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2/mergeContigs.txt 2022-11-14 22:15:45,359:INFO:Merge2 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2/exp_mrg2 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_2/mergeContigs.txt 2022-11-14 22:15:45,359:INFO:Running jobs for Merge2 2022-11-14 22:15:45,359:INFO: Starting Multi-Threaded Process: Merge2 2022-11-14 22:15:45,360:INFO:conda_env=None,conda_source=None 2022-11-14 22:15:45,360:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:15:45,379:INFO: START 1: Merge2, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:16:00,061:INFO: STOP 1: Merge2, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.24m RunTime= 0h 0.22m CPUload=1995% saphyr1a 2022-11-14 22:16:00,062:INFO: Finished Multi-Threaded Process: Merge2 2022-11-14 22:16:00,064:INFO: Merge2 completed in: 14.7s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.25m CPU time : 0h 0.24m Begin machine parsable segment for: Merge2 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge2 14.68167 129.47 131.10 0:13.06 1995% 27573812 Mon Nov 14 16:15:59 CST 2022 2022-11-14 22:16:00,064:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2 2022-11-14 22:16:00,064:INFO:Loaded 93 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2 2022-11-14 22:16:00,066:INFO:Found 91 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2 2022-11-14 22:16:00,067:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:16:00,067:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:16:00,068:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg2 2022-11-14 22:16:00,069:INFO:conda_env=None,conda_source=None 2022-11-14 22:16:00,069:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:16:00,074:INFO: START 1: mrg_exp_mrg2_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:16:05,092:INFO: STOP 1: mrg_exp_mrg2_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.08m RunTime= 0h 0.04m CPUload=78% bionano2d 2022-11-14 22:16:05,093:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg2 2022-11-14 22:16:05,094:INFO: mrg_exp_mrg2_0 completed in: 5.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.08m CPU time : 0h 0.08m Begin machine parsable segment for: Cmap_Merge_exp_mrg2 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg2_0 5.01757 1.52 0.20 0:02.21 78% 147928 Mon Nov 14 16:29:07 CST 2022 2022-11-14 22:16:06,219:INFO:Generating jobs for CharacterizeD_Merge2 2022-11-14 22:16:06,219:INFO:CharacterizeD_Merge2 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2/EXP_MRG2.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2/alignref/EXP_MRG2 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:16:06,221:INFO:Running jobs for CharacterizeD_Merge2 2022-11-14 22:16:06,222:INFO:************************* Executing stage 21: extension0_3 ************************* 2022-11-14 22:16:06,222:INFO:Starting stage extension0 2022-11-14 22:16:06,222:INFO:extension0 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:16:06,222:INFO:Generating Jobs for extension0, conf.extensionCount= 3 2022-11-14 22:16:06,223:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2 2022-11-14 22:16:06,223:INFO:Loaded 97 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2 2022-11-14 22:16:06,223:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge2 2022-11-14 22:16:06,224:INFO:conda_env=None,conda_source=None 2022-11-14 22:16:06,224:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:16:06,225:INFO:Found 91 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2 2022-11-14 22:16:06,225:INFO:computing modified weights for noES extension stage= extension0 2022-11-14 22:16:06,226:INFO:Calling contigComputeWeights with ExtensionNoES= True 2022-11-14 22:16:06,255:INFO:Changing maxthreads from 56 to 48, TotThreads from 56 to 56 2022-11-14 22:16:06,255:INFO:MaxWeight = 180.00, witr= 0, threads= 48 (totThreads=56, minthreads=6, maxthreads=48), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_group_weights 2022-11-14 22:16:06,261:INFO: START 1: CharD_Merge2, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:16:06,609:INFO:NumHostJobs= 3, TotalJobs= 51, HostWeight= 63.608853313601735, TargetWeight= 63.34891258685085, TotalWeight= 791.8614073356356 2022-11-14 22:16:06,609:INFO:restoring maxthreads from 48 to 56, TotThreads from 56 to 56 2022-11-14 22:16:06,613:INFO:extension0_3 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg2/EXP_MRG2.cmap -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:16:06,614:INFO: Starting Multi-Threaded Process: extension0_3 2022-11-14 22:16:06,614:INFO:conda_env=None,conda_source=None 2022-11-14 22:16:06,614:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:16:06,629:INFO: START 1: extension0 , 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 22:16:06,654:INFO: START 2: extension0 , 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 22:16:06,694:INFO: START 3: extension0 , 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 22:16:06,719:INFO: START 4: extension0 , 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 22:16:06,754:INFO: START 5: extension0 , 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 22:16:06,784:INFO: START 6: extension0 , 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 22:16:06,808:INFO: START 7: extension0 , 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 22:16:06,833:INFO: START 8: extension0 , 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 22:16:06,857:INFO: START 9: extension0 , 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 22:16:06,882:INFO: START 10: extension0 1, 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 22:16:06,907:INFO: START 11: extension0 1, 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 22:16:06,944:INFO: START 12: extension0 1, 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 22:16:06,969:INFO: START 13: extension0 1, 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 22:16:06,999:INFO: START 14: extension0 1, 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 22:16:07,025:INFO: START 15: extension0 1, 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 22:16:07,053:INFO: START 16: extension0 1, 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 22:16:15,040:INFO: STOP 1: CharD_Merge2, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.15m RunTime= 0h 0.12m CPUload=1473% saphyr1a 2022-11-14 22:16:15,041:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge2 2022-11-14 22:16:15,042:INFO:Characterize Merge2 completed : will check Results 2022-11-14 22:16:15,043:INFO: CharD_Merge2 completed in: 8.8s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.15m CPU time : 0h 0.15m Begin machine parsable segment for: CharacterizeD_Merge2 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge2 8.77913 94.14 9.12 0:07.00 1473% 1186516 Mon Nov 14 16:16:14 CST 2022 2022-11-14 22:16:16,391:INFO:Stage Summary: CharacterizeD_Merge2 Number Genome Maps: 91 Total Genome Map Length (Mbp): 1294.103 Mean Genome Map Length (Mbp): 14.221 Median Genome Map Length (Mbp): 2.353 Genome Map N50 (Mbp): 45.663 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.915 Total number of aligned Genome Maps : 2 (0.02) Total Aligned Length (Mbp) : 0.232 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.232 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 22:16:16,391:INFO:Characterize Merge2 results check completed 2022-11-14 22:16:59,589:INFO: STOP 14: extension0 1, 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 0.88m RunTime= 0h 0.84m CPUload=4160% bionano1b 2022-11-14 22:17:00,758:INFO: STOP 12: extension0 1, 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 0.90m RunTime= 0h 0.86m CPUload=4127% bionano1d 2022-11-14 22:17:46,514:INFO: STOP 6: extension0 , 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 1.66m RunTime= 0h 1.62m CPUload=2250% bionano2d 2022-11-14 22:17:53,605:INFO: STOP 9: extension0 , 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.74m CPUload=2072% saphyr1b 2022-11-14 22:17:53,629:INFO: STOP 5: extension0 , 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.72m CPUload=2126% saphyr1c 2022-11-14 22:17:53,631:INFO: STOP 4: extension0 , 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.74m CPUload=2069% bionano2c 2022-11-14 22:17:53,732:INFO: STOP 7: extension0 , 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.73m CPUload=2092% bionano2b 2022-11-14 22:17:54,052:INFO: STOP 1: extension0 , 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.75m CPUload=2070% bionano2d 2022-11-14 22:17:54,186:INFO: STOP 10: extension0 1, 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.68m CPUload=2132% saphyr1d 2022-11-14 22:17:54,199:INFO: STOP 3: extension0 , 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.74m CPUload=2086% saphyr1d 2022-11-14 22:17:55,144:INFO: STOP 16: extension0 1, 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 1.80m RunTime= 0h 1.71m CPUload=2086% saphyr1b 2022-11-14 22:17:55,147:INFO: STOP 15: extension0 1, 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 1.80m RunTime= 0h 1.70m CPUload=2084% bionano2b 2022-11-14 22:17:55,160:INFO: STOP 11: extension0 1, 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 1.80m RunTime= 0h 1.75m CPUload=2074% bionano2c 2022-11-14 22:17:55,639:INFO: STOP 2: extension0 , 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.77m CPUload=2046% bionano1c 2022-11-14 22:17:55,653:INFO: STOP 8: extension0 , 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 1.81m RunTime= 0h 1.78m CPUload=2057% bionano1c 2022-11-14 22:17:56,246:INFO: STOP 13: extension0 1, 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.79m CPUload=2054% saphyr1c 2022-11-14 22:17:56,246:INFO: Finished Multi-Threaded Process: extension0_3 2022-11-14 22:17:56,250:INFO: extension0 1 completed in: 107.4s Result Found extension0 2 completed in: 109.0s Result Found extension0 3 completed in: 107.5s Result Found extension0 4 completed in: 106.9s Result Found extension0 5 completed in: 106.9s Result Found extension0 6 completed in: 99.7s Result Found extension0 7 completed in: 106.9s Result Found extension0 8 completed in: 108.8s Result Found extension0 9 completed in: 106.7s Result Found extension0 10 completed in: 107.3s Result Found extension0 11 completed in: 108.3s Result Found extension0 12 completed in: 53.8s Result Found extension0 13 completed in: 109.3s Result Found extension0 14 completed in: 52.6s Result Found extension0 15 completed in: 108.1s Result Found extension0 16 completed in: 108.1s Result Found Completed 16 jobs on 56 threads Clock time: 0h 1.83m CPU time : 0h 26.79m Begin machine parsable segment for: extension0_3 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension0_3_bnx1 107.42304 2139.12 33.03 1:44.90 2070% 2289584 Mon Nov 14 16:30:55 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx2 108.98526 2138.28 33.16 1:46.09 2046% 2286700 Mon Nov 14 16:30:57 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx3 107.50478 2148.08 32.85 1:44.54 2086% 2287712 Mon Nov 14 16:40:32 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx4 106.91211 2123.37 32.86 1:44.17 2069% 2285084 Mon Nov 14 16:30:55 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx5 106.87488 2165.08 30.42 1:43.26 2126% 2290552 Mon Nov 14 16:34:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx6 99.72981 2163.97 28.77 1:37.43 2250% 2285428 Mon Nov 14 16:30:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx7 106.92341 2140.88 32.52 1:43.84 2092% 2289672 Mon Nov 14 16:30:55 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx8 108.81965 2163.42 32.63 1:46.73 2057% 2296176 Mon Nov 14 16:30:57 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx9 106.74762 2135.86 31.11 1:44.54 2072% 2286776 Mon Nov 14 16:11:28 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx10 107.30406 2125.26 30.04 1:41.08 2132% 2281892 Mon Nov 14 16:40:28 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx11 108.25304 2149.65 32.21 1:45.17 2074% 2284212 Mon Nov 14 16:30:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx12 53.81411 2103.67 31.73 0:51.74 4127% 2284280 Mon Nov 14 16:30:02 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx13 109.27691 2166.76 33.23 1:47.07 2054% 2291252 Mon Nov 14 16:34:22 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx14 52.58951 2079.23 29.44 0:50.67 4160% 2293432 Mon Nov 14 16:30:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx15 108.12145 2100.85 29.55 1:42.22 2084% 2281784 Mon Nov 14 16:30:55 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_3_bnx16 108.09080 2106.12 29.09 1:42.31 2086% 2282316 Mon Nov 14 16:11:28 CST 2022 2022-11-14 22:17:56,250:INFO:************************* Executing stage 22: extension1_3 ************************* 2022-11-14 22:17:56,250:INFO:Starting stage extension1 2022-11-14 22:17:56,251:INFO:extension1 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:17:56,251:INFO:Generating Jobs for extension1, conf.extensionCount= 3 2022-11-14 22:17:56,252:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3 inputContigPrefix= exp_extension0_3 2022-11-14 22:17:56,263:INFO:extension1_3 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 6 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3/exp_extension1_3 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_group1 -f -stdout -stderr -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 3 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_3/exp_extension0_3_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:17:56,264:INFO: Starting Multi-Threaded Process: extension1_3 2022-11-14 22:17:56,264:INFO:conda_env=None,conda_source=None 2022-11-14 22:17:56,264:INFO: Running 51 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:17:56,335:INFO: START 1: extension1 , 56 Thr, 1 R, 51 T, 0 F, 50 Q 2022-11-14 22:17:56,368:INFO: START 2: extension1 2, 56 Thr, 2 R, 51 T, 0 F, 49 Q 2022-11-14 22:17:56,402:INFO: START 3: extension1 2, 56 Thr, 3 R, 51 T, 0 F, 48 Q 2022-11-14 22:17:56,427:INFO: START 4: extension1 , 6 Thr, 4 R, 51 T, 0 F, 47 Q 2022-11-14 22:17:56,461:INFO: START 5: extension1 , 6 Thr, 5 R, 51 T, 0 F, 46 Q 2022-11-14 22:17:56,495:INFO: START 6: extension1 , 6 Thr, 6 R, 51 T, 0 F, 45 Q 2022-11-14 22:17:56,528:INFO: START 7: extension1 , 6 Thr, 7 R, 51 T, 0 F, 44 Q 2022-11-14 22:17:56,556:INFO: START 8: extension1 , 6 Thr, 8 R, 51 T, 0 F, 43 Q 2022-11-14 22:17:56,581:INFO: START 9: extension1 , 6 Thr, 9 R, 51 T, 0 F, 42 Q 2022-11-14 22:17:56,605:INFO: START 10: extension1 2, 6 Thr, 10 R, 51 T, 0 F, 41 Q 2022-11-14 22:17:56,646:INFO: START 11: extension1 , 6 Thr, 11 R, 51 T, 0 F, 40 Q 2022-11-14 22:17:56,677:INFO: START 12: extension1 2, 6 Thr, 12 R, 51 T, 0 F, 39 Q 2022-11-14 22:17:56,701:INFO: START 13: extension1 , 6 Thr, 13 R, 51 T, 0 F, 38 Q 2022-11-14 22:17:56,726:INFO: START 14: extension1 2, 6 Thr, 14 R, 51 T, 0 F, 37 Q 2022-11-14 22:17:56,751:INFO: START 15: extension1 1, 6 Thr, 15 R, 51 T, 0 F, 36 Q 2022-11-14 22:17:56,782:INFO: START 16: extension1 2, 6 Thr, 16 R, 51 T, 0 F, 35 Q 2022-11-14 22:17:56,806:INFO: START 17: extension1 4, 6 Thr, 17 R, 51 T, 0 F, 34 Q 2022-11-14 22:17:56,831:INFO: START 18: extension1 3, 6 Thr, 18 R, 51 T, 0 F, 33 Q 2022-11-14 22:17:56,856:INFO: START 19: extension1 4, 6 Thr, 19 R, 51 T, 0 F, 32 Q 2022-11-14 22:17:56,881:INFO: START 20: extension1 3, 6 Thr, 20 R, 51 T, 0 F, 31 Q 2022-11-14 22:17:56,912:INFO: START 21: extension1 1, 6 Thr, 21 R, 51 T, 0 F, 30 Q 2022-11-14 22:17:56,937:INFO: START 22: extension1 1, 6 Thr, 22 R, 51 T, 0 F, 29 Q 2022-11-14 22:17:56,971:INFO: START 23: extension1 1, 6 Thr, 23 R, 51 T, 0 F, 28 Q 2022-11-14 22:17:57,004:INFO: START 24: extension1 4, 6 Thr, 24 R, 51 T, 0 F, 27 Q 2022-11-14 22:17:57,032:INFO: START 25: extension1 4, 6 Thr, 25 R, 51 T, 0 F, 26 Q 2022-11-14 22:17:57,058:INFO: START 26: extension1 3, 6 Thr, 26 R, 51 T, 0 F, 25 Q 2022-11-14 22:17:57,106:INFO: START 27: extension1 4, 6 Thr, 27 R, 51 T, 0 F, 24 Q 2022-11-14 22:17:57,134:INFO: START 28: extension1 1, 6 Thr, 28 R, 51 T, 0 F, 23 Q 2022-11-14 22:17:57,167:INFO: START 29: extension1 4, 6 Thr, 29 R, 51 T, 0 F, 22 Q 2022-11-14 22:17:57,192:INFO: START 30: extension1 1, 6 Thr, 30 R, 51 T, 0 F, 21 Q 2022-11-14 22:17:57,238:INFO: START 31: extension1 3, 6 Thr, 31 R, 51 T, 0 F, 20 Q 2022-11-14 22:17:57,263:INFO: START 32: extension1 1, 6 Thr, 32 R, 51 T, 0 F, 19 Q 2022-11-14 22:17:57,292:INFO: START 33: extension1 4, 6 Thr, 33 R, 51 T, 0 F, 18 Q 2022-11-14 22:17:57,318:INFO: START 34: extension1 1, 6 Thr, 34 R, 51 T, 0 F, 17 Q 2022-11-14 22:17:57,348:INFO: START 35: extension1 3, 6 Thr, 35 R, 51 T, 0 F, 16 Q 2022-11-14 22:17:57,379:INFO: START 36: extension1 4, 6 Thr, 36 R, 51 T, 0 F, 15 Q 2022-11-14 22:17:57,412:INFO: START 37: extension1 4, 6 Thr, 37 R, 51 T, 0 F, 14 Q 2022-11-14 22:17:57,437:INFO: START 38: extension1 3, 6 Thr, 38 R, 51 T, 0 F, 13 Q 2022-11-14 22:17:57,467:INFO: START 39: extension1 1, 6 Thr, 39 R, 51 T, 0 F, 12 Q 2022-11-14 22:17:57,492:INFO: START 40: extension1 1, 6 Thr, 40 R, 51 T, 0 F, 11 Q 2022-11-14 22:17:57,518:INFO: START 41: extension1 2, 6 Thr, 41 R, 51 T, 0 F, 10 Q 2022-11-14 22:17:57,559:INFO: START 42: extension1 2, 6 Thr, 42 R, 51 T, 0 F, 9 Q 2022-11-14 22:17:57,591:INFO: START 43: extension1 4, 6 Thr, 43 R, 51 T, 0 F, 8 Q 2022-11-14 22:17:57,624:INFO: START 44: extension1 2, 6 Thr, 44 R, 51 T, 0 F, 7 Q 2022-11-14 22:17:57,671:INFO: START 45: extension1 3, 6 Thr, 45 R, 51 T, 0 F, 6 Q 2022-11-14 22:17:57,696:INFO: START 46: extension1 3, 6 Thr, 46 R, 51 T, 0 F, 5 Q 2022-11-14 22:17:57,720:INFO: START 47: extension1 5, 6 Thr, 47 R, 51 T, 0 F, 4 Q 2022-11-14 22:17:57,745:INFO: START 48: extension1 3, 6 Thr, 48 R, 51 T, 0 F, 3 Q 2022-11-14 22:17:57,770:INFO: START 49: extension1 2, 6 Thr, 49 R, 51 T, 0 F, 2 Q 2022-11-14 22:17:57,794:INFO: START 50: extension1 3, 6 Thr, 50 R, 51 T, 0 F, 1 Q 2022-11-14 22:17:57,828:INFO: START 51: extension1 5, 6 Thr, 51 R, 51 T, 0 F, 0 Q 2022-11-14 22:18:11,533:INFO: STOP 31: extension1 3, 6 Thr, 50 R, 51 T, 1 F, 0 Q TotalTime= 0h 0.24m RunTime= 0h 0.19m CPUload=325% bionano2d 2022-11-14 22:18:13,263:INFO: STOP 24: extension1 4, 6 Thr, 49 R, 51 T, 2 F, 0 Q TotalTime= 0h 0.27m RunTime= 0h 0.16m CPUload=230% bionano1b 2022-11-14 22:18:14,028:INFO: STOP 3: extension1 2, 56 Thr, 48 R, 51 T, 3 F, 0 Q TotalTime= 0h 0.29m RunTime= 0h 0.26m CPUload=579% bionano1a 2022-11-14 22:18:14,933:INFO: STOP 17: extension1 4, 6 Thr, 47 R, 51 T, 4 F, 0 Q TotalTime= 0h 0.30m RunTime= 0h 0.15m CPUload=283% bionano1d 2022-11-14 22:18:15,600:INFO: STOP 2: extension1 2, 56 Thr, 46 R, 51 T, 5 F, 0 Q TotalTime= 0h 0.32m RunTime= 0h 0.29m CPUload=2304% bionano2a 2022-11-14 22:18:16,289:INFO: STOP 36: extension1 4, 6 Thr, 45 R, 51 T, 6 F, 0 Q TotalTime= 0h 0.32m RunTime= 0h 0.20m CPUload=201% bionano1b 2022-11-14 22:18:16,435:INFO: STOP 20: extension1 3, 6 Thr, 44 R, 51 T, 7 F, 0 Q TotalTime= 0h 0.33m RunTime= 0h 0.20m CPUload=297% bionano1d 2022-11-14 22:18:16,460:INFO: STOP 16: extension1 2, 6 Thr, 43 R, 51 T, 8 F, 0 Q TotalTime= 0h 0.33m RunTime= 0h 0.29m CPUload=274% bionano1b 2022-11-14 22:18:16,473:INFO: STOP 14: extension1 2, 6 Thr, 42 R, 51 T, 9 F, 0 Q TotalTime= 0h 0.33m RunTime= 0h 0.29m CPUload=295% bionano1b 2022-11-14 22:18:16,608:INFO: STOP 50: extension1 3, 6 Thr, 41 R, 51 T, 10 F, 0 Q TotalTime= 0h 0.31m RunTime= 0h 0.10m CPUload=185% bionano1d 2022-11-14 22:18:18,649:INFO: STOP 27: extension1 4, 6 Thr, 40 R, 51 T, 11 F, 0 Q TotalTime= 0h 0.36m RunTime= 0h 0.24m CPUload=283% bionano1b 2022-11-14 22:18:19,294:INFO: STOP 1: extension1 , 56 Thr, 39 R, 51 T, 12 F, 0 Q TotalTime= 0h 0.38m RunTime= 0h 0.35m CPUload=1718% bionano1a 2022-11-14 22:18:22,023:INFO: STOP 38: extension1 3, 6 Thr, 38 R, 51 T, 13 F, 0 Q TotalTime= 0h 0.41m RunTime= 0h 0.23m CPUload=267% bionano1d 2022-11-14 22:18:22,757:INFO: STOP 48: extension1 3, 6 Thr, 37 R, 51 T, 14 F, 0 Q TotalTime= 0h 0.42m RunTime= 0h 0.34m CPUload=371% bionano2d 2022-11-14 22:18:31,843:INFO: STOP 37: extension1 4, 6 Thr, 36 R, 51 T, 15 F, 0 Q TotalTime= 0h 0.57m RunTime= 0h 0.53m CPUload=444% bionano2d 2022-11-14 22:18:52,177:INFO: STOP 49: extension1 2, 6 Thr, 35 R, 51 T, 16 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.76m CPUload=492% saphyr1c 2022-11-14 22:18:52,201:INFO: STOP 45: extension1 3, 6 Thr, 34 R, 51 T, 17 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.77m CPUload=490% saphyr1c 2022-11-14 22:18:59,718:INFO: STOP 34: extension1 1, 6 Thr, 33 R, 51 T, 18 F, 0 Q TotalTime= 0h 1.04m RunTime= 0h 0.99m CPUload=437% bionano2d 2022-11-14 22:19:06,280:INFO: STOP 33: extension1 4, 6 Thr, 32 R, 51 T, 19 F, 0 Q TotalTime= 0h 1.15m RunTime= 0h 1.05m CPUload=280% bionano1b 2022-11-14 22:19:15,110:INFO: STOP 28: extension1 1, 6 Thr, 31 R, 51 T, 20 F, 0 Q TotalTime= 0h 1.30m RunTime= 0h 1.24m CPUload=436% bionano2d 2022-11-14 22:19:22,368:INFO: STOP 12: extension1 2, 6 Thr, 30 R, 51 T, 21 F, 0 Q TotalTime= 0h 1.43m RunTime= 0h 1.38m CPUload=382% bionano1b 2022-11-14 22:19:25,508:INFO: STOP 41: extension1 2, 6 Thr, 29 R, 51 T, 22 F, 0 Q TotalTime= 0h 1.47m RunTime= 0h 1.32m CPUload=533% saphyr1c 2022-11-14 22:19:29,551:INFO: STOP 7: extension1 , 6 Thr, 28 R, 51 T, 23 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.50m CPUload=321% bionano1d 2022-11-14 22:19:29,708:INFO: STOP 29: extension1 4, 6 Thr, 27 R, 51 T, 24 F, 0 Q TotalTime= 0h 1.54m RunTime= 0h 1.38m CPUload=166% bionano1d 2022-11-14 22:19:33,382:INFO: STOP 11: extension1 , 6 Thr, 26 R, 51 T, 25 F, 0 Q TotalTime= 0h 1.61m RunTime= 0h 1.55m CPUload=330% bionano1d 2022-11-14 22:19:36,306:INFO: STOP 4: extension1 , 6 Thr, 25 R, 51 T, 26 F, 0 Q TotalTime= 0h 1.66m RunTime= 0h 1.62m CPUload=335% bionano1d 2022-11-14 22:19:36,497:INFO: STOP 18: extension1 3, 6 Thr, 24 R, 51 T, 27 F, 0 Q TotalTime= 0h 1.66m RunTime= 0h 1.63m CPUload=375% bionano1b 2022-11-14 22:19:38,994:INFO: STOP 44: extension1 2, 6 Thr, 23 R, 51 T, 28 F, 0 Q TotalTime= 0h 1.69m RunTime= 0h 1.62m CPUload=552% bionano2d 2022-11-14 22:19:39,018:INFO: STOP 40: extension1 1, 6 Thr, 22 R, 51 T, 29 F, 0 Q TotalTime= 0h 1.69m RunTime= 0h 1.64m CPUload=540% bionano2d 2022-11-14 22:19:41,647:INFO: STOP 47: extension1 5, 6 Thr, 21 R, 51 T, 30 F, 0 Q TotalTime= 0h 1.73m RunTime= 0h 1.62m CPUload=316% bionano1b 2022-11-14 22:19:46,773:INFO: STOP 42: extension1 2, 6 Thr, 20 R, 51 T, 31 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.64m CPUload=333% bionano1d 2022-11-14 22:19:47,053:INFO: STOP 25: extension1 4, 6 Thr, 19 R, 51 T, 32 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.78m CPUload=631% bionano2d 2022-11-14 22:20:05,786:INFO: STOP 21: extension1 1, 6 Thr, 18 R, 51 T, 33 F, 0 Q TotalTime= 0h 2.15m RunTime= 0h 2.12m CPUload=365% bionano1b 2022-11-14 22:20:06,949:INFO: STOP 26: extension1 3, 6 Thr, 17 R, 51 T, 34 F, 0 Q TotalTime= 0h 2.16m RunTime= 0h 2.02m CPUload=293% bionano1d 2022-11-14 22:20:08,697:INFO: STOP 10: extension1 2, 6 Thr, 16 R, 51 T, 35 F, 0 Q TotalTime= 0h 2.20m RunTime= 0h 2.16m CPUload=447% bionano1b 2022-11-14 22:20:30,129:INFO: STOP 46: extension1 3, 6 Thr, 15 R, 51 T, 36 F, 0 Q TotalTime= 0h 2.54m RunTime= 0h 2.38m CPUload=378% bionano1d 2022-11-14 22:20:35,142:INFO: STOP 22: extension1 1, 6 Thr, 14 R, 51 T, 37 F, 0 Q TotalTime= 0h 2.64m RunTime= 0h 2.61m CPUload=823% bionano2d 2022-11-14 22:20:45,196:INFO: STOP 19: extension1 4, 6 Thr, 13 R, 51 T, 38 F, 0 Q TotalTime= 0h 2.81m RunTime= 0h 2.78m CPUload=977% bionano2d 2022-11-14 22:20:47,991:INFO: STOP 51: extension1 5, 6 Thr, 12 R, 51 T, 39 F, 0 Q TotalTime= 0h 2.84m RunTime= 0h 2.74m CPUload=468% bionano1b 2022-11-14 22:20:54,212:INFO: STOP 5: extension1 , 6 Thr, 11 R, 51 T, 40 F, 0 Q TotalTime= 0h 2.96m RunTime= 0h 2.91m CPUload=369% bionano1d 2022-11-14 22:21:00,323:INFO: STOP 35: extension1 3, 6 Thr, 10 R, 51 T, 41 F, 0 Q TotalTime= 0h 3.05m RunTime= 0h 2.87m CPUload=399% bionano1d 2022-11-14 22:21:13,024:INFO: STOP 43: extension1 4, 6 Thr, 9 R, 51 T, 42 F, 0 Q TotalTime= 0h 3.26m RunTime= 0h 3.14m CPUload=505% bionano1b 2022-11-14 22:21:16,019:INFO: STOP 39: extension1 1, 6 Thr, 8 R, 51 T, 43 F, 0 Q TotalTime= 0h 3.31m RunTime= 0h 3.19m CPUload=495% bionano1b 2022-11-14 22:21:23,120:INFO: STOP 30: extension1 1, 6 Thr, 7 R, 51 T, 44 F, 0 Q TotalTime= 0h 3.43m RunTime= 0h 3.33m CPUload=514% bionano1b 2022-11-14 22:21:23,466:INFO: STOP 9: extension1 , 6 Thr, 6 R, 51 T, 45 F, 0 Q TotalTime= 0h 3.45m RunTime= 0h 3.39m CPUload=454% bionano1d 2022-11-14 22:21:31,405:INFO: STOP 6: extension1 , 6 Thr, 5 R, 51 T, 46 F, 0 Q TotalTime= 0h 3.58m RunTime= 0h 3.55m CPUload=572% bionano1b 2022-11-14 22:21:35,527:INFO: STOP 23: extension1 1, 6 Thr, 4 R, 51 T, 47 F, 0 Q TotalTime= 0h 3.64m RunTime= 0h 3.51m CPUload=467% bionano1d 2022-11-14 22:21:35,540:INFO: STOP 13: extension1 , 6 Thr, 3 R, 51 T, 48 F, 0 Q TotalTime= 0h 3.65m RunTime= 0h 3.57m CPUload=480% bionano1d 2022-11-14 22:21:35,553:INFO: STOP 32: extension1 1, 6 Thr, 2 R, 51 T, 49 F, 0 Q TotalTime= 0h 3.64m RunTime= 0h 3.46m CPUload=477% bionano1d 2022-11-14 22:21:39,576:INFO: STOP 15: extension1 1, 6 Thr, 1 R, 51 T, 50 F, 0 Q TotalTime= 0h 3.71m RunTime= 0h 3.62m CPUload=487% bionano1d 2022-11-14 22:21:45,815:INFO: STOP 8: extension1 , 6 Thr, 0 R, 51 T, 51 F, 0 Q TotalTime= 0h 3.82m RunTime= 0h 3.78m CPUload=633% bionano1b 2022-11-14 22:21:45,815:INFO: Finished Multi-Threaded Process: extension1_3 2022-11-14 22:21:45,832:INFO: extension1 1 completed in: 23.0s Result Found extension1 24 completed in: 19.2s Result Found extension1 25 completed in: 17.6s Result Found extension1 2 completed in: 99.9s Result Found extension1 3 completed in: 177.8s Result Found extension1 4 completed in: 214.9s Result Found extension1 5 completed in: 93.0s Result Found extension1 6 completed in: 229.3s Result Found extension1 7 completed in: 206.9s Result Found extension1 26 completed in: 132.1s Result Found extension1 8 completed in: 96.7s Result Found extension1 27 completed in: 85.7s Result Found extension1 9 completed in: 218.8s Result Found extension1 28 completed in: 19.7s Result Found extension1 10 completed in: 222.8s Result Found extension1 29 completed in: 19.7s Result Found extension1 40 completed in: 18.1s Result Found extension1 30 completed in: 99.7s Result Found extension1 41 completed in: 168.3s Result Found extension1 31 completed in: 19.6s Result Found extension1 11 completed in: 128.9s Result Found extension1 12 completed in: 158.2s Result Found extension1 13 completed in: 218.6s Result Found extension1 42 completed in: 16.3s Result Found extension1 43 completed in: 110.0s Result Found extension1 32 completed in: 129.9s Result Found extension1 44 completed in: 21.5s Result Found extension1 14 completed in: 78.0s Result Found extension1 45 completed in: 92.5s Result Found extension1 15 completed in: 205.9s Result Found extension1 33 completed in: 14.3s Result Found extension1 16 completed in: 218.3s Result Found extension1 46 completed in: 69.0s Result Found extension1 17 completed in: 62.4s Result Found extension1 34 completed in: 183.0s Result Found extension1 47 completed in: 18.9s Result Found extension1 48 completed in: 34.4s Result Found extension1 35 completed in: 24.6s Result Found extension1 18 completed in: 198.6s Result Found extension1 19 completed in: 101.5s Result Found extension1 20 completed in: 88.0s Result Found extension1 21 completed in: 109.2s Result Found extension1 49 completed in: 195.4s Result Found extension1 22 completed in: 101.4s Result Found extension1 36 completed in: 54.5s Result Found extension1 37 completed in: 152.4s Result Found extension1 50 completed in: 103.9s Result Found extension1 38 completed in: 25.0s Result Found extension1 23 completed in: 54.4s Result Found extension1 39 completed in: 18.8s Result Found extension1 51 completed in: 170.2s Result Found Completed 51 jobs on 56 threads Clock time: 0h 3.83m CPU time : 1h 29.01m Begin machine parsable segment for: extension1_3 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension1_3_contig1.cmap 22.95821 355.01 4.97 0:20.95 1718% 1304860 Mon Nov 14 16:31:21 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig91.cmap 19.23125 381.45 23.42 0:17.57 2304% 820688 Mon Nov 14 16:31:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig84.cmap 17.62580 77.06 12.87 0:15.51 579% 245704 Mon Nov 14 16:31:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig5.cmap 99.87875 322.77 3.47 1:37.18 335% 1080396 Mon Nov 14 16:32:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig2.cmap 177.75058 634.69 9.21 2:54.40 369% 1553368 Mon Nov 14 16:33:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig3.cmap 214.91018 1212.00 5.94 3:32.81 572% 1304436 Mon Nov 14 16:34:33 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig15.cmap 93.02325 285.93 2.77 1:29.83 321% 1001348 Mon Nov 14 16:32:31 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig9.cmap 229.25836 1430.13 6.32 3:46.67 633% 1133256 Mon Nov 14 16:34:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig8.cmap 206.88511 919.29 4.67 3:23.10 454% 1082688 Mon Nov 14 16:34:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig71.cmap 132.09105 578.36 1.78 2:09.63 447% 209004 Mon Nov 14 16:33:10 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig13.cmap 96.73598 303.21 3.37 1:32.88 330% 1031560 Mon Nov 14 16:32:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig28.cmap 85.69082 314.28 1.93 1:22.74 382% 658752 Mon Nov 14 16:32:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig7.cmap 218.83831 1020.45 7.69 3:34.17 480% 1471444 Mon Nov 14 16:34:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig40.cmap 19.74683 50.48 0.78 0:17.33 295% 312600 Mon Nov 14 16:31:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig6.cmap 222.82553 1048.17 8.98 3:36.88 487% 1320168 Mon Nov 14 16:34:41 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig37.cmap 19.67796 46.93 0.87 0:17.38 274% 315016 Mon Nov 14 16:31:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig55.cmap 18.12637 25.20 0.79 0:09.15 283% 323312 Mon Nov 14 16:31:15 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig50.cmap 99.66541 364.62 1.76 1:37.48 375% 273768 Mon Nov 14 16:32:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig88.cmap 168.33946 1612.86 15.54 2:46.58 977% 261444 Mon Nov 14 16:33:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig79.cmap 19.55440 35.02 0.77 0:12.04 297% 284216 Mon Nov 14 16:31:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig4.cmap 128.87351 457.09 6.35 2:06.93 365% 1310540 Mon Nov 14 16:33:08 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig17.cmap 158.20543 1280.93 7.44 2:36.44 823% 954688 Mon Nov 14 16:33:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig11.cmap 218.55526 973.96 10.01 3:30.31 467% 1659728 Mon Nov 14 16:34:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig46.cmap 16.25809 21.54 0.54 0:09.59 230% 250124 Mon Nov 14 16:31:15 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig61.cmap 110.02075 670.41 2.88 1:46.54 631% 231264 Mon Nov 14 16:32:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig24.cmap 129.89104 352.40 2.78 2:00.93 293% 779708 Mon Nov 14 16:33:09 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig45.cmap 21.54213 40.64 0.80 0:14.62 283% 341324 Mon Nov 14 16:31:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig16.cmap 77.97626 320.30 3.84 1:14.28 436% 1394768 Mon Nov 14 16:32:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig64.cmap 92.54101 135.92 1.19 1:22.48 166% 323520 Mon Nov 14 16:32:31 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig14.cmap 205.92766 1019.29 7.91 3:19.78 514% 1616592 Mon Nov 14 16:34:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig69.cmap 14.29531 36.88 0.71 0:11.56 325% 300716 Mon Nov 14 16:31:13 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig12.cmap 218.28985 984.21 5.41 3:27.46 477% 997880 Mon Nov 14 16:34:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig36.cmap 68.98777 175.23 1.22 1:02.89 280% 347060 Mon Nov 14 16:32:08 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig10.cmap 62.40008 257.79 2.79 0:59.60 437% 1094068 Mon Nov 14 16:32:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig82.cmap 182.97470 683.53 3.83 2:51.98 399% 498600 Mon Nov 14 16:34:02 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig47.cmap 18.91020 23.75 0.64 0:12.12 201% 316784 Mon Nov 14 16:31:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig85.cmap 34.43052 140.14 0.94 0:31.77 444% 164952 Mon Nov 14 16:31:34 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig53.cmap 24.58565 35.75 0.78 0:13.67 267% 286300 Mon Nov 14 16:31:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig20.cmap 198.55204 940.19 6.36 3:11.13 495% 1475216 Mon Nov 14 16:34:17 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig22.cmap 101.52608 527.26 2.90 1:38.02 540% 781276 Mon Nov 14 16:32:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig19.cmap 87.98999 418.44 3.99 1:19.17 533% 1239060 Mon Nov 14 16:35:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig18.cmap 109.21390 322.79 4.53 1:38.12 333% 1307040 Mon Nov 14 16:32:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig56.cmap 195.43269 949.35 3.11 3:08.54 505% 328480 Mon Nov 14 16:34:14 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig21.cmap 101.36937 534.23 3.38 1:37.32 552% 829716 Mon Nov 14 16:32:41 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig48.cmap 54.53038 224.69 2.28 0:46.24 490% 716104 Mon Nov 14 16:35:18 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig43.cmap 152.43307 536.49 2.40 2:22.25 378% 269964 Mon Nov 14 16:33:32 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig68.cmap 103.92654 305.63 1.22 1:36.91 316% 178684 Mon Nov 14 16:32:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig27.cmap 25.01188 75.55 1.11 0:20.62 371% 498392 Mon Nov 14 16:31:24 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig23.cmap 54.40740 221.18 2.03 0:45.35 492% 728332 Mon Nov 14 16:35:17 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig58.cmap 18.81375 10.67 0.46 0:05.99 185% 198144 Mon Nov 14 16:31:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_3_contig60.cmap 170.16358 765.62 2.63 2:43.96 468% 340088 Mon Nov 14 16:33:50 CST 2022 2022-11-14 22:21:45,833:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3 2022-11-14 22:21:45,834:INFO:Loaded 597 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3 2022-11-14 22:21:45,836:INFO:Found 91 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3 2022-11-14 22:21:45,836:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:21:45,837:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:21:45,838:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_extension1_3 2022-11-14 22:21:45,838:INFO:conda_env=None,conda_source=None 2022-11-14 22:21:45,838:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:21:45,861:INFO: START 1: mrg_exp_extensi, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:21:50,420:INFO: STOP 1: mrg_exp_extensi, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.08m RunTime= 0h 0.04m CPUload=179% bionano1c 2022-11-14 22:21:50,420:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_extension1_3 2022-11-14 22:21:50,421:INFO: mrg_exp_extension1_3_0 completed in: 4.6s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.08m CPU time : 0h 0.08m Begin machine parsable segment for: Cmap_Merge_exp_extension1_3 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_extension1_3_0 4.55812 3.48 0.59 0:02.26 179% 292316 Mon Nov 14 16:34:52 CST 2022 2022-11-14 22:21:51,568:INFO:Generating jobs for CharacterizeD_extension1_3 2022-11-14 22:21:51,568:INFO:CharacterizeD_extension1_3 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3/EXP_EXTENSION1_3.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3/alignref/EXP_EXTENSION1_3 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:21:51,570:INFO:Will NOT run Characterize extension1_3 due to -NoExtCharCheck 2022-11-14 22:21:51,570:INFO:************************* Executing stage 23: Merge3 ************************* 2022-11-14 22:21:51,570:INFO:Characterize extension1_3 results check completed 2022-11-14 22:21:51,571:INFO:Generating jobs for Merge3 2022-11-14 22:21:51,571:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3 2022-11-14 22:21:51,571:INFO:Loaded 601 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3 2022-11-14 22:21:51,572:INFO:Found 91 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3 2022-11-14 22:21:51,572:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3/mergeContigs.txt 2022-11-14 22:21:51,573:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3/mergeContigs.txt 2022-11-14 22:21:51,573:INFO:Merge3 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3/exp_mrg3 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_3/mergeContigs.txt 2022-11-14 22:21:51,573:INFO:Running jobs for Merge3 2022-11-14 22:21:51,573:INFO: Starting Multi-Threaded Process: Merge3 2022-11-14 22:21:51,573:INFO:conda_env=None,conda_source=None 2022-11-14 22:21:51,573:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:21:51,594:INFO: START 1: Merge3, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:22:04,091:INFO: STOP 1: Merge3, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.21m RunTime= 0h 0.18m CPUload=2010% saphyr1a 2022-11-14 22:22:04,091:INFO: Finished Multi-Threaded Process: Merge3 2022-11-14 22:22:04,093:INFO: Merge3 completed in: 12.5s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.21m CPU time : 0h 0.21m Begin machine parsable segment for: Merge3 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge3 12.49645 116.40 103.15 0:10.92 2010% 27407736 Mon Nov 14 16:22:03 CST 2022 2022-11-14 22:22:04,093:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3 2022-11-14 22:22:04,094:INFO:Loaded 90 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3 2022-11-14 22:22:04,095:INFO:Found 88 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3 2022-11-14 22:22:04,095:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:22:04,096:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:22:04,097:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg3 2022-11-14 22:22:04,097:INFO:conda_env=None,conda_source=None 2022-11-14 22:22:04,098:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:22:04,102:INFO: START 1: mrg_exp_mrg3_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:22:08,086:INFO: STOP 1: mrg_exp_mrg3_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.07m RunTime= 0h 0.03m CPUload=114% bionano1c 2022-11-14 22:22:08,087:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg3 2022-11-14 22:22:08,087:INFO: mrg_exp_mrg3_0 completed in: 4.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.07m CPU time : 0h 0.07m Begin machine parsable segment for: Cmap_Merge_exp_mrg3 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg3_0 3.98407 1.45 0.31 0:01.55 114% 147852 Mon Nov 14 16:35:10 CST 2022 2022-11-14 22:22:09,192:INFO:Generating jobs for CharacterizeD_Merge3 2022-11-14 22:22:09,193:INFO:CharacterizeD_Merge3 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3/EXP_MRG3.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3/alignref/EXP_MRG3 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:22:09,193:INFO:Running jobs for CharacterizeD_Merge3 2022-11-14 22:22:09,194:INFO:************************* Executing stage 24: extension0_4 ************************* 2022-11-14 22:22:09,194:INFO:Starting stage extension0 2022-11-14 22:22:09,194:INFO:extension0 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:22:09,194:INFO:Generating Jobs for extension0, conf.extensionCount= 4 2022-11-14 22:22:09,195:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3 2022-11-14 22:22:09,195:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge3 2022-11-14 22:22:09,195:INFO:conda_env=None,conda_source=None 2022-11-14 22:22:09,195:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:22:09,196:INFO:Loaded 94 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3 2022-11-14 22:22:09,197:INFO:Found 88 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3 2022-11-14 22:22:09,197:INFO:computing modified weights for noES extension stage= extension0 2022-11-14 22:22:09,197:INFO:Calling contigComputeWeights with ExtensionNoES= True 2022-11-14 22:22:09,226:INFO: START 1: CharD_Merge3, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:22:09,229:INFO:Changing maxthreads from 56 to 48, TotThreads from 56 to 56 2022-11-14 22:22:09,229:INFO:MaxWeight = 180.00, witr= 0, threads= 48 (totThreads=56, minthreads=6, maxthreads=48), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_group_weights 2022-11-14 22:22:09,447:INFO:NumHostJobs= 3, TotalJobs= 50, HostWeight= 62.97982096009429, TargetWeight= 61.906150580398354, TotalWeight= 773.8268822549794 2022-11-14 22:22:09,447:INFO:restoring maxthreads from 48 to 56, TotThreads from 56 to 56 2022-11-14 22:22:09,451:INFO:extension0_4 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg3/EXP_MRG3.cmap -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:22:09,452:INFO: Starting Multi-Threaded Process: extension0_4 2022-11-14 22:22:09,452:INFO:conda_env=None,conda_source=None 2022-11-14 22:22:09,452:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:22:09,470:INFO: START 1: extension0 , 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 22:22:09,495:INFO: START 2: extension0 , 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 22:22:09,536:INFO: START 3: extension0 , 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 22:22:09,565:INFO: START 4: extension0 , 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 22:22:09,598:INFO: START 5: extension0 , 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 22:22:09,624:INFO: START 6: extension0 , 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 22:22:09,657:INFO: START 7: extension0 , 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 22:22:09,682:INFO: START 8: extension0 , 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 22:22:09,707:INFO: START 9: extension0 , 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 22:22:09,732:INFO: START 10: extension0 1, 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 22:22:09,756:INFO: START 11: extension0 1, 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 22:22:09,798:INFO: START 12: extension0 1, 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 22:22:09,823:INFO: START 13: extension0 1, 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 22:22:09,847:INFO: START 14: extension0 1, 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 22:22:09,872:INFO: START 15: extension0 1, 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 22:22:09,911:INFO: START 16: extension0 1, 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 22:22:18,095:INFO: STOP 1: CharD_Merge3, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.15m RunTime= 0h 0.12m CPUload=1424% saphyr1a 2022-11-14 22:22:18,095:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge3 2022-11-14 22:22:18,096:INFO:Characterize Merge3 completed : will check Results 2022-11-14 22:22:18,096:INFO: CharD_Merge3 completed in: 8.9s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.15m CPU time : 0h 0.15m Begin machine parsable segment for: CharacterizeD_Merge3 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge3 8.86860 94.77 8.52 0:07.25 1424% 1186608 Mon Nov 14 16:22:17 CST 2022 2022-11-14 22:22:19,542:INFO:Stage Summary: CharacterizeD_Merge3 Number Genome Maps: 88 Total Genome Map Length (Mbp): 1295.591 Mean Genome Map Length (Mbp): 14.723 Median Genome Map Length (Mbp): 2.501 Genome Map N50 (Mbp): 45.820 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.917 Total number of aligned Genome Maps : 2 (0.02) Total Aligned Length (Mbp) : 0.232 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.232 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 22:22:19,543:INFO:Characterize Merge3 results check completed 2022-11-14 22:23:02,566:INFO: STOP 15: extension0 1, 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 0.88m RunTime= 0h 0.84m CPUload=4164% bionano1b 2022-11-14 22:23:04,721:INFO: STOP 14: extension0 1, 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.85m CPUload=4107% bionano1d 2022-11-14 22:23:55,474:INFO: STOP 9: extension0 , 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 1.76m RunTime= 0h 1.69m CPUload=2137% saphyr1d 2022-11-14 22:23:55,946:INFO: STOP 4: extension0 , 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 1.77m RunTime= 0h 1.72m CPUload=2100% saphyr1c 2022-11-14 22:23:56,013:INFO: STOP 11: extension0 1, 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 1.77m RunTime= 0h 1.69m CPUload=2170% saphyr1c 2022-11-14 22:23:56,114:INFO: STOP 13: extension0 1, 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 1.77m RunTime= 0h 1.72m CPUload=2099% saphyr1b 2022-11-14 22:23:56,160:INFO: STOP 6: extension0 , 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.68m CPUload=2140% saphyr1b 2022-11-14 22:23:56,370:INFO: STOP 3: extension0 , 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.72m CPUload=2105% bionano2c 2022-11-14 22:23:56,678:INFO: STOP 10: extension0 1, 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.74m CPUload=2059% bionano2c 2022-11-14 22:23:56,888:INFO: STOP 16: extension0 1, 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.75m CPUload=2058% bionano2d 2022-11-14 22:23:56,912:INFO: STOP 7: extension0 , 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.75m CPUload=2077% bionano2d 2022-11-14 22:23:59,397:INFO: STOP 2: extension0 , 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.76m CPUload=2059% saphyr1d 2022-11-14 22:23:59,612:INFO: STOP 5: extension0 , 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.80m CPUload=2024% bionano2b 2022-11-14 22:23:59,614:INFO: STOP 1: extension0 , 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.79m CPUload=2008% bionano1c 2022-11-14 22:23:59,616:INFO: STOP 12: extension0 1, 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.80m CPUload=2018% bionano2b 2022-11-14 22:23:59,618:INFO: STOP 8: extension0 , 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.79m CPUload=2046% bionano1c 2022-11-14 22:23:59,618:INFO: Finished Multi-Threaded Process: extension0_4 2022-11-14 22:23:59,622:INFO: extension0 1 completed in: 110.1s Result Found extension0 2 completed in: 109.9s Result Found extension0 3 completed in: 106.8s Result Found extension0 4 completed in: 106.4s Result Found extension0 5 completed in: 110.0s Result Found extension0 6 completed in: 106.5s Result Found extension0 7 completed in: 107.3s Result Found extension0 8 completed in: 109.9s Result Found extension0 9 completed in: 105.8s Result Found extension0 10 completed in: 106.9s Result Found extension0 11 completed in: 106.3s Result Found extension0 12 completed in: 109.8s Result Found extension0 13 completed in: 106.3s Result Found extension0 14 completed in: 54.9s Result Found extension0 15 completed in: 52.7s Result Found extension0 16 completed in: 107.0s Result Found Completed 16 jobs on 56 threads Clock time: 0h 1.84m CPU time : 0h 26.94m Begin machine parsable segment for: extension0_4 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension0_4_bnx1 110.14375 2128.63 32.32 1:47.58 2008% 2287228 Mon Nov 14 16:37:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx2 109.90113 2145.66 30.57 1:45.66 2059% 2286284 Mon Nov 14 16:46:36 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx3 106.83327 2139.33 28.62 1:42.94 2105% 2288548 Mon Nov 14 16:36:57 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx4 106.38069 2137.01 30.40 1:43.18 2100% 2284628 Mon Nov 14 16:40:21 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx5 110.01341 2148.86 31.73 1:47.69 2024% 2291724 Mon Nov 14 16:37:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx6 106.53522 2132.62 30.79 1:41.06 2140% 2286476 Mon Nov 14 16:17:28 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx7 107.25449 2143.15 34.24 1:44.81 2077% 2291632 Mon Nov 14 16:36:58 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx8 109.93583 2167.20 34.66 1:47.57 2046% 2296500 Mon Nov 14 16:37:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx9 105.76722 2134.77 30.03 1:41.28 2137% 2287416 Mon Nov 14 16:46:31 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx10 106.94633 2124.61 28.11 1:44.54 2059% 2282240 Mon Nov 14 16:36:58 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx11 106.25652 2168.60 28.30 1:41.21 2170% 2285056 Mon Nov 14 16:40:19 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx12 109.81807 2140.57 33.50 1:47.70 2018% 2283436 Mon Nov 14 16:37:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx13 106.29093 2134.63 30.87 1:43.15 2099% 2290952 Mon Nov 14 16:17:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx14 54.87316 2072.20 30.67 0:51.20 4107% 2292204 Mon Nov 14 16:36:05 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx15 52.69339 2060.74 29.59 0:50.19 4164% 2280876 Mon Nov 14 16:36:04 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_4_bnx16 106.97666 2126.53 30.90 1:44.80 2058% 2285016 Mon Nov 14 16:36:58 CST 2022 2022-11-14 22:23:59,622:INFO:************************* Executing stage 25: extension1_4 ************************* 2022-11-14 22:23:59,622:INFO:Starting stage extension1 2022-11-14 22:23:59,622:INFO:extension1 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:23:59,623:INFO:Generating Jobs for extension1, conf.extensionCount= 4 2022-11-14 22:23:59,624:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4 inputContigPrefix= exp_extension0_4 2022-11-14 22:23:59,635:INFO:extension1_4 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 6 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4/exp_extension1_4 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_group1 -f -stdout -stderr -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 3 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_4/exp_extension0_4_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:23:59,636:INFO: Starting Multi-Threaded Process: extension1_4 2022-11-14 22:23:59,636:INFO:conda_env=None,conda_source=None 2022-11-14 22:23:59,636:INFO: Running 50 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:24:00,134:INFO: START 1: extension1 , 56 Thr, 1 R, 50 T, 0 F, 49 Q 2022-11-14 22:24:00,171:INFO: START 2: extension1 2, 56 Thr, 2 R, 50 T, 0 F, 48 Q 2022-11-14 22:24:00,196:INFO: START 3: extension1 2, 56 Thr, 3 R, 50 T, 0 F, 47 Q 2022-11-14 22:24:00,320:INFO: START 4: extension1 , 6 Thr, 4 R, 50 T, 0 F, 46 Q 2022-11-14 22:24:00,345:INFO: START 5: extension1 , 6 Thr, 5 R, 50 T, 0 F, 45 Q 2022-11-14 22:24:00,370:INFO: START 6: extension1 , 6 Thr, 6 R, 50 T, 0 F, 44 Q 2022-11-14 22:24:00,408:INFO: START 7: extension1 , 6 Thr, 7 R, 50 T, 0 F, 43 Q 2022-11-14 22:24:00,433:INFO: START 8: extension1 , 6 Thr, 8 R, 50 T, 0 F, 42 Q 2022-11-14 22:24:00,472:INFO: START 9: extension1 , 6 Thr, 9 R, 50 T, 0 F, 41 Q 2022-11-14 22:24:00,514:INFO: START 10: extension1 2, 6 Thr, 10 R, 50 T, 0 F, 40 Q 2022-11-14 22:24:00,538:INFO: START 11: extension1 , 6 Thr, 11 R, 50 T, 0 F, 39 Q 2022-11-14 22:24:00,563:INFO: START 12: extension1 , 6 Thr, 12 R, 50 T, 0 F, 38 Q 2022-11-14 22:24:00,588:INFO: START 13: extension1 2, 6 Thr, 13 R, 50 T, 0 F, 37 Q 2022-11-14 22:24:00,637:INFO: START 14: extension1 2, 6 Thr, 14 R, 50 T, 0 F, 36 Q 2022-11-14 22:24:00,662:INFO: START 15: extension1 3, 6 Thr, 15 R, 50 T, 0 F, 35 Q 2022-11-14 22:24:00,687:INFO: START 16: extension1 1, 6 Thr, 16 R, 50 T, 0 F, 34 Q 2022-11-14 22:24:00,727:INFO: START 17: extension1 2, 6 Thr, 17 R, 50 T, 0 F, 33 Q 2022-11-14 22:24:00,752:INFO: START 18: extension1 4, 6 Thr, 18 R, 50 T, 0 F, 32 Q 2022-11-14 22:24:00,777:INFO: START 19: extension1 3, 6 Thr, 19 R, 50 T, 0 F, 31 Q 2022-11-14 22:24:00,801:INFO: START 20: extension1 1, 6 Thr, 20 R, 50 T, 0 F, 30 Q 2022-11-14 22:24:00,827:INFO: START 21: extension1 3, 6 Thr, 21 R, 50 T, 0 F, 29 Q 2022-11-14 22:24:00,870:INFO: START 22: extension1 1, 6 Thr, 22 R, 50 T, 0 F, 28 Q 2022-11-14 22:24:00,913:INFO: START 23: extension1 1, 6 Thr, 23 R, 50 T, 0 F, 27 Q 2022-11-14 22:24:00,956:INFO: START 24: extension1 4, 6 Thr, 24 R, 50 T, 0 F, 26 Q 2022-11-14 22:24:00,981:INFO: START 25: extension1 4, 6 Thr, 25 R, 50 T, 0 F, 25 Q 2022-11-14 22:24:01,006:INFO: START 26: extension1 4, 6 Thr, 26 R, 50 T, 0 F, 24 Q 2022-11-14 22:24:01,032:INFO: START 27: extension1 1, 6 Thr, 27 R, 50 T, 0 F, 23 Q 2022-11-14 22:24:01,057:INFO: START 28: extension1 4, 6 Thr, 28 R, 50 T, 0 F, 22 Q 2022-11-14 22:24:01,082:INFO: START 29: extension1 3, 6 Thr, 29 R, 50 T, 0 F, 21 Q 2022-11-14 22:24:01,121:INFO: START 30: extension1 1, 6 Thr, 30 R, 50 T, 0 F, 20 Q 2022-11-14 22:24:01,155:INFO: START 31: extension1 4, 6 Thr, 31 R, 50 T, 0 F, 19 Q 2022-11-14 22:24:01,189:INFO: START 32: extension1 1, 6 Thr, 32 R, 50 T, 0 F, 18 Q 2022-11-14 22:24:01,224:INFO: START 33: extension1 3, 6 Thr, 33 R, 50 T, 0 F, 17 Q 2022-11-14 22:24:01,249:INFO: START 34: extension1 4, 6 Thr, 34 R, 50 T, 0 F, 16 Q 2022-11-14 22:24:01,274:INFO: START 35: extension1 1, 6 Thr, 35 R, 50 T, 0 F, 15 Q 2022-11-14 22:24:01,300:INFO: START 36: extension1 3, 6 Thr, 36 R, 50 T, 0 F, 14 Q 2022-11-14 22:24:01,326:INFO: START 37: extension1 4, 6 Thr, 37 R, 50 T, 0 F, 13 Q 2022-11-14 22:24:01,374:INFO: START 38: extension1 3, 6 Thr, 38 R, 50 T, 0 F, 12 Q 2022-11-14 22:24:01,400:INFO: START 39: extension1 1, 6 Thr, 39 R, 50 T, 0 F, 11 Q 2022-11-14 22:24:01,424:INFO: START 40: extension1 1, 6 Thr, 40 R, 50 T, 0 F, 10 Q 2022-11-14 22:24:01,461:INFO: START 41: extension1 2, 6 Thr, 41 R, 50 T, 0 F, 9 Q 2022-11-14 22:24:01,486:INFO: START 42: extension1 2, 6 Thr, 42 R, 50 T, 0 F, 8 Q 2022-11-14 22:24:01,511:INFO: START 43: extension1 2, 6 Thr, 43 R, 50 T, 0 F, 7 Q 2022-11-14 22:24:01,544:INFO: START 44: extension1 3, 6 Thr, 44 R, 50 T, 0 F, 6 Q 2022-11-14 22:24:01,569:INFO: START 45: extension1 4, 6 Thr, 45 R, 50 T, 0 F, 5 Q 2022-11-14 22:24:01,594:INFO: START 46: extension1 3, 6 Thr, 46 R, 50 T, 0 F, 4 Q 2022-11-14 22:24:01,619:INFO: START 47: extension1 4, 6 Thr, 47 R, 50 T, 0 F, 3 Q 2022-11-14 22:24:01,644:INFO: START 48: extension1 3, 6 Thr, 48 R, 50 T, 0 F, 2 Q 2022-11-14 22:24:01,687:INFO: START 49: extension1 2, 6 Thr, 49 R, 50 T, 0 F, 1 Q 2022-11-14 22:24:01,725:INFO: START 50: extension1 5, 6 Thr, 50 R, 50 T, 0 F, 0 Q 2022-11-14 22:24:08,514:INFO: STOP 3: extension1 2, 56 Thr, 49 R, 50 T, 1 F, 0 Q TotalTime= 0h 0.14m RunTime= 0h 0.10m CPUload=1018% bionano1a 2022-11-14 22:24:11,881:INFO: STOP 38: extension1 3, 6 Thr, 48 R, 50 T, 2 F, 0 Q TotalTime= 0h 0.18m RunTime= 0h 0.10m CPUload=360% saphyr1d 2022-11-14 22:24:12,017:INFO: STOP 25: extension1 4, 6 Thr, 47 R, 50 T, 3 F, 0 Q TotalTime= 0h 0.18m RunTime= 0h 0.14m CPUload=194% saphyr1c 2022-11-14 22:24:14,131:INFO: STOP 21: extension1 3, 6 Thr, 46 R, 50 T, 4 F, 0 Q TotalTime= 0h 0.22m RunTime= 0h 0.09m CPUload=229% bionano1d 2022-11-14 22:24:15,403:INFO: STOP 46: extension1 3, 6 Thr, 45 R, 50 T, 5 F, 0 Q TotalTime= 0h 0.23m RunTime= 0h 0.10m CPUload=193% bionano1b 2022-11-14 22:24:16,165:INFO: STOP 18: extension1 4, 6 Thr, 44 R, 50 T, 6 F, 0 Q TotalTime= 0h 0.26m RunTime= 0h 0.21m CPUload=253% bionano1b 2022-11-14 22:24:17,700:INFO: STOP 10: extension1 2, 6 Thr, 43 R, 50 T, 7 F, 0 Q TotalTime= 0h 0.29m RunTime= 0h 0.24m CPUload=275% bionano1b 2022-11-14 22:24:17,813:INFO: STOP 48: extension1 3, 6 Thr, 42 R, 50 T, 8 F, 0 Q TotalTime= 0h 0.27m RunTime= 0h 0.22m CPUload=349% bionano2b 2022-11-14 22:24:18,433:INFO: STOP 31: extension1 4, 6 Thr, 41 R, 50 T, 9 F, 0 Q TotalTime= 0h 0.29m RunTime= 0h 0.17m CPUload=311% bionano1b 2022-11-14 22:24:18,579:INFO: STOP 14: extension1 2, 6 Thr, 40 R, 50 T, 10 F, 0 Q TotalTime= 0h 0.30m RunTime= 0h 0.24m CPUload=277% bionano1b 2022-11-14 22:24:19,806:INFO: STOP 26: extension1 4, 6 Thr, 39 R, 50 T, 11 F, 0 Q TotalTime= 0h 0.31m RunTime= 0h 0.18m CPUload=363% bionano1b 2022-11-14 22:24:20,427:INFO: STOP 2: extension1 2, 56 Thr, 38 R, 50 T, 12 F, 0 Q TotalTime= 0h 0.34m RunTime= 0h 0.31m CPUload=2497% bionano2a 2022-11-14 22:24:22,527:INFO: STOP 1: extension1 , 56 Thr, 37 R, 50 T, 13 F, 0 Q TotalTime= 0h 0.37m RunTime= 0h 0.34m CPUload=1784% bionano1a 2022-11-14 22:24:28,930:INFO: STOP 17: extension1 2, 6 Thr, 36 R, 50 T, 14 F, 0 Q TotalTime= 0h 0.47m RunTime= 0h 0.35m CPUload=259% bionano1d 2022-11-14 22:24:29,961:INFO: STOP 37: extension1 4, 6 Thr, 35 R, 50 T, 15 F, 0 Q TotalTime= 0h 0.48m RunTime= 0h 0.28m CPUload=83% bionano1d 2022-11-14 22:24:48,168:INFO: STOP 34: extension1 4, 6 Thr, 34 R, 50 T, 16 F, 0 Q TotalTime= 0h 0.78m RunTime= 0h 0.65m CPUload=403% bionano1b 2022-11-14 22:24:50,711:INFO: STOP 44: extension1 3, 6 Thr, 33 R, 50 T, 17 F, 0 Q TotalTime= 0h 0.82m RunTime= 0h 0.76m CPUload=488% saphyr1d 2022-11-14 22:24:55,050:INFO: STOP 49: extension1 2, 6 Thr, 32 R, 50 T, 18 F, 0 Q TotalTime= 0h 0.89m RunTime= 0h 0.75m CPUload=483% bionano2c 2022-11-14 22:25:01,854:INFO: STOP 35: extension1 1, 6 Thr, 31 R, 50 T, 19 F, 0 Q TotalTime= 0h 1.01m RunTime= 0h 0.88m CPUload=414% saphyr1c 2022-11-14 22:25:04,544:INFO: STOP 41: extension1 2, 6 Thr, 30 R, 50 T, 20 F, 0 Q TotalTime= 0h 1.05m RunTime= 0h 0.93m CPUload=430% saphyr1c 2022-11-14 22:25:09,666:INFO: STOP 29: extension1 3, 6 Thr, 29 R, 50 T, 21 F, 0 Q TotalTime= 0h 1.14m RunTime= 0h 1.01m CPUload=490% saphyr1c 2022-11-14 22:25:10,133:INFO: STOP 8: extension1 , 6 Thr, 28 R, 50 T, 22 F, 0 Q TotalTime= 0h 1.16m RunTime= 0h 1.12m CPUload=408% bionano1b 2022-11-14 22:25:11,495:INFO: STOP 36: extension1 3, 6 Thr, 27 R, 50 T, 23 F, 0 Q TotalTime= 0h 1.17m RunTime= 0h 1.04m CPUload=505% bionano2c 2022-11-14 22:25:18,891:INFO: STOP 47: extension1 4, 6 Thr, 26 R, 50 T, 24 F, 0 Q TotalTime= 0h 1.29m RunTime= 0h 1.14m CPUload=496% saphyr1c 2022-11-14 22:25:21,280:INFO: STOP 28: extension1 4, 6 Thr, 25 R, 50 T, 25 F, 0 Q TotalTime= 0h 1.34m RunTime= 0h 1.20m CPUload=508% bionano1b 2022-11-14 22:25:24,529:INFO: STOP 42: extension1 2, 6 Thr, 24 R, 50 T, 26 F, 0 Q TotalTime= 0h 1.38m RunTime= 0h 1.26m CPUload=486% bionano2c 2022-11-14 22:25:33,458:INFO: STOP 11: extension1 , 6 Thr, 23 R, 50 T, 27 F, 0 Q TotalTime= 0h 1.55m RunTime= 0h 1.48m CPUload=345% bionano1d 2022-11-14 22:25:35,331:INFO: STOP 40: extension1 1, 6 Thr, 22 R, 50 T, 28 F, 0 Q TotalTime= 0h 1.57m RunTime= 0h 1.44m CPUload=565% bionano1b 2022-11-14 22:25:38,694:INFO: STOP 4: extension1 , 6 Thr, 21 R, 50 T, 29 F, 0 Q TotalTime= 0h 1.64m RunTime= 0h 1.58m CPUload=345% bionano1d 2022-11-14 22:25:44,663:INFO: STOP 15: extension1 3, 6 Thr, 20 R, 50 T, 30 F, 0 Q TotalTime= 0h 1.73m RunTime= 0h 1.64m CPUload=176% bionano1d 2022-11-14 22:25:54,774:INFO: STOP 27: extension1 1, 6 Thr, 19 R, 50 T, 31 F, 0 Q TotalTime= 0h 1.90m RunTime= 0h 1.77m CPUload=345% bionano1d 2022-11-14 22:25:54,809:INFO: STOP 20: extension1 1, 6 Thr, 18 R, 50 T, 32 F, 0 Q TotalTime= 0h 1.90m RunTime= 0h 1.86m CPUload=414% bionano1b 2022-11-14 22:26:03,869:INFO: STOP 39: extension1 1, 6 Thr, 17 R, 50 T, 33 F, 0 Q TotalTime= 0h 2.04m RunTime= 0h 1.91m CPUload=626% bionano1c 2022-11-14 22:26:09,139:INFO: STOP 32: extension1 1, 6 Thr, 16 R, 50 T, 34 F, 0 Q TotalTime= 0h 2.13m RunTime= 0h 2.00m CPUload=685% saphyr1c 2022-11-14 22:26:11,052:INFO: STOP 45: extension1 4, 6 Thr, 15 R, 50 T, 35 F, 0 Q TotalTime= 0h 2.16m RunTime= 0h 2.03m CPUload=661% bionano1c 2022-11-14 22:26:17,409:INFO: STOP 22: extension1 1, 6 Thr, 14 R, 50 T, 36 F, 0 Q TotalTime= 0h 2.28m RunTime= 0h 2.24m CPUload=781% saphyr1c 2022-11-14 22:26:17,897:INFO: STOP 13: extension1 2, 6 Thr, 13 R, 50 T, 37 F, 0 Q TotalTime= 0h 2.29m RunTime= 0h 2.20m CPUload=303% bionano1d 2022-11-14 22:26:35,547:INFO: STOP 12: extension1 , 6 Thr, 12 R, 50 T, 38 F, 0 Q TotalTime= 0h 2.58m RunTime= 0h 2.54m CPUload=665% bionano1b 2022-11-14 22:26:35,571:INFO: STOP 6: extension1 , 6 Thr, 11 R, 50 T, 39 F, 0 Q TotalTime= 0h 2.59m RunTime= 0h 2.54m CPUload=756% bionano1b 2022-11-14 22:26:39,650:INFO: STOP 23: extension1 1, 6 Thr, 10 R, 50 T, 40 F, 0 Q TotalTime= 0h 2.65m RunTime= 0h 2.62m CPUload=619% bionano1b 2022-11-14 22:26:46,118:INFO: STOP 43: extension1 2, 6 Thr, 9 R, 50 T, 41 F, 0 Q TotalTime= 0h 2.74m RunTime= 0h 2.57m CPUload=381% bionano1d 2022-11-14 22:26:46,121:INFO: STOP 33: extension1 3, 6 Thr, 8 R, 50 T, 42 F, 0 Q TotalTime= 0h 2.75m RunTime= 0h 2.57m CPUload=330% bionano1d 2022-11-14 22:26:46,686:INFO: STOP 16: extension1 1, 6 Thr, 7 R, 50 T, 43 F, 0 Q TotalTime= 0h 2.77m RunTime= 0h 2.73m CPUload=621% bionano1b 2022-11-14 22:26:59,222:INFO: STOP 5: extension1 , 6 Thr, 6 R, 50 T, 44 F, 0 Q TotalTime= 0h 2.98m RunTime= 0h 2.93m CPUload=360% bionano1d 2022-11-14 22:27:07,336:INFO: STOP 19: extension1 3, 6 Thr, 5 R, 50 T, 45 F, 0 Q TotalTime= 0h 3.11m RunTime= 0h 2.98m CPUload=406% bionano1d 2022-11-14 22:27:18,384:INFO: STOP 50: extension1 5, 6 Thr, 4 R, 50 T, 46 F, 0 Q TotalTime= 0h 3.28m RunTime= 0h 3.11m CPUload=350% bionano1d 2022-11-14 22:27:28,442:INFO: STOP 9: extension1 , 6 Thr, 3 R, 50 T, 47 F, 0 Q TotalTime= 0h 3.47m RunTime= 0h 3.40m CPUload=444% bionano1d 2022-11-14 22:27:51,538:INFO: STOP 30: extension1 1, 6 Thr, 2 R, 50 T, 48 F, 0 Q TotalTime= 0h 3.84m RunTime= 0h 3.68m CPUload=495% bionano1d 2022-11-14 22:27:58,607:INFO: STOP 7: extension1 , 6 Thr, 1 R, 50 T, 49 F, 0 Q TotalTime= 0h 3.97m RunTime= 0h 3.92m CPUload=530% bionano1d 2022-11-14 22:28:21,679:INFO: STOP 24: extension1 4, 6 Thr, 0 R, 50 T, 50 F, 0 Q TotalTime= 0h 4.35m RunTime= 0h 4.21m CPUload=651% bionano1d 2022-11-14 22:28:21,680:INFO: Finished Multi-Threaded Process: extension1_4 2022-11-14 22:28:21,698:INFO: extension1 1 completed in: 22.4s Result Found extension1 24 completed in: 20.3s Result Found extension1 25 completed in: 8.3s Result Found extension1 2 completed in: 98.4s Result Found extension1 3 completed in: 178.9s Result Found extension1 4 completed in: 155.2s Result Found extension1 5 completed in: 238.2s Result Found extension1 6 completed in: 69.7s Result Found extension1 7 completed in: 208.0s Result Found extension1 26 completed in: 17.2s Result Found extension1 8 completed in: 92.9s Result Found extension1 9 completed in: 155.0s Result Found extension1 27 completed in: 137.3s Result Found extension1 28 completed in: 17.9s Result Found extension1 39 completed in: 104.0s Result Found extension1 10 completed in: 166.0s Result Found extension1 29 completed in: 28.2s Result Found extension1 40 completed in: 15.4s Result Found extension1 30 completed in: 186.6s Result Found extension1 11 completed in: 114.0s Result Found extension1 31 completed in: 13.3s Result Found extension1 12 completed in: 136.5s Result Found extension1 13 completed in: 158.7s Result Found extension1 41 completed in: 260.7s Result Found extension1 42 completed in: 11.0s Result Found extension1 43 completed in: 18.8s Result Found extension1 14 completed in: 113.7s Result Found extension1 44 completed in: 80.2s Result Found extension1 32 completed in: 68.6s Result Found extension1 15 completed in: 230.4s Result Found extension1 45 completed in: 17.3s Result Found extension1 16 completed in: 127.9s Result Found extension1 33 completed in: 164.9s Result Found extension1 46 completed in: 46.9s Result Found extension1 17 completed in: 60.6s Result Found extension1 34 completed in: 70.2s Result Found extension1 47 completed in: 28.6s Result Found extension1 35 completed in: 10.5s Result Found extension1 18 completed in: 122.5s Result Found extension1 19 completed in: 93.9s Result Found extension1 20 completed in: 63.1s Result Found extension1 21 completed in: 83.0s Result Found extension1 22 completed in: 164.6s Result Found extension1 36 completed in: 49.2s Result Found extension1 48 completed in: 129.5s Result Found extension1 37 completed in: 13.8s Result Found extension1 49 completed in: 77.3s Result Found extension1 38 completed in: 16.2s Result Found extension1 23 completed in: 53.4s Result Found extension1 50 completed in: 196.7s Result Found Completed 50 jobs on 56 threads Clock time: 0h 4.37m CPU time : 1h 18.60m Begin machine parsable segment for: extension1_4 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension1_4_contig1.cmap 22.39245 358.73 5.60 0:20.41 1784% 1304564 Mon Nov 14 16:37:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig88.cmap 20.25584 443.57 24.10 0:18.72 2497% 823156 Mon Nov 14 16:37:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig81.cmap 8.31766 49.97 11.05 0:05.99 1018% 246588 Mon Nov 14 16:37:10 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig5.cmap 98.37400 323.42 3.36 1:34.62 345% 1079932 Mon Nov 14 16:38:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig2.cmap 178.87649 622.41 9.91 2:55.26 360% 1553704 Mon Nov 14 16:40:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig3.cmap 155.20112 1147.05 7.19 2:32.47 756% 1304844 Mon Nov 14 16:39:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig9.cmap 238.19876 1238.93 7.07 3:54.65 530% 1140016 Mon Nov 14 16:41:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig15.cmap 69.70048 272.31 2.92 1:07.31 408% 1001052 Mon Nov 14 16:38:12 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig8.cmap 207.96978 901.08 4.63 3:23.54 444% 1082708 Mon Nov 14 16:40:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig42.cmap 17.18599 38.57 0.73 0:14.26 275% 288416 Mon Nov 14 16:37:19 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig13.cmap 92.91936 302.68 3.00 1:28.48 345% 1031592 Mon Nov 14 16:38:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig7.cmap 154.98345 1005.83 8.55 2:32.34 665% 1471376 Mon Nov 14 16:39:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig28.cmap 137.30872 397.88 2.26 2:11.97 303% 545728 Mon Nov 14 16:39:19 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig75.cmap 17.94184 38.39 0.78 0:14.13 277% 288400 Mon Nov 14 16:37:19 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig63.cmap 104.00101 171.91 1.12 1:38.08 176% 233508 Mon Nov 14 16:38:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig6.cmap 165.99906 1007.98 9.03 2:43.68 621% 1320380 Mon Nov 14 16:39:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig59.cmap 28.20344 53.88 0.88 0:21.10 259% 326168 Mon Nov 14 16:37:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig85.cmap 15.41323 31.70 0.75 0:12.80 253% 309120 Mon Nov 14 16:37:17 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig31.cmap 186.55921 724.24 2.54 2:58.86 406% 307372 Mon Nov 14 16:40:09 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig4.cmap 114.00777 456.76 6.38 1:51.84 414% 1310672 Mon Nov 14 16:38:57 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig83.cmap 13.30405 11.86 0.44 0:05.37 229% 184864 Mon Nov 14 16:37:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig17.cmap 136.53870 1041.84 7.69 2:14.37 781% 954948 Mon Nov 14 16:42:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig11.cmap 158.73639 962.25 10.45 2:37.04 619% 1659680 Mon Nov 14 16:39:42 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig79.cmap 260.72363 1632.90 12.91 4:12.75 651% 261712 Mon Nov 14 16:41:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig61.cmap 11.03586 16.01 0.76 0:08.64 194% 312804 Mon Nov 14 16:40:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig45.cmap 18.80065 37.74 0.91 0:10.64 363% 340376 Mon Nov 14 16:37:21 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig16.cmap 113.74156 361.97 4.56 1:46.00 345% 1395112 Mon Nov 14 16:38:57 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig70.cmap 80.22275 365.13 1.91 1:12.21 508% 320172 Mon Nov 14 16:38:23 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig35.cmap 68.58425 293.44 2.55 1:00.37 490% 864316 Mon Nov 14 16:41:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig14.cmap 230.41698 1082.78 9.33 3:40.28 495% 1616956 Mon Nov 14 16:40:53 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig36.cmap 17.27772 30.18 0.75 0:09.93 311% 325044 Mon Nov 14 16:37:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig12.cmap 127.94997 816.86 5.41 1:59.96 685% 1004820 Mon Nov 14 16:42:34 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig33.cmap 164.89684 507.06 2.44 2:34.06 330% 309160 Mon Nov 14 16:39:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig76.cmap 46.91850 156.81 1.43 0:39.19 403% 331048 Mon Nov 14 16:37:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig10.cmap 60.57945 215.27 2.52 0:52.51 414% 1093924 Mon Nov 14 16:41:27 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig80.cmap 70.19554 313.63 2.29 1:02.47 505% 498332 Mon Nov 14 16:38:13 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig82.cmap 28.63434 13.26 0.55 0:16.57 83% 226252 Mon Nov 14 16:37:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig51.cmap 10.50654 21.30 0.70 0:06.10 360% 286276 Mon Nov 14 16:46:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig20.cmap 122.46935 712.45 6.64 1:54.70 626% 1475568 Mon Nov 14 16:39:05 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig22.cmap 93.90620 485.14 3.03 1:26.29 565% 781876 Mon Nov 14 16:38:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig18.cmap 63.08291 236.24 2.78 0:55.50 430% 1307424 Mon Nov 14 16:41:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig19.cmap 83.04345 363.51 3.94 1:15.60 486% 1239412 Mon Nov 14 16:38:26 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig21.cmap 164.60696 584.50 3.42 2:34.27 381% 829900 Mon Nov 14 16:39:48 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig48.cmap 49.16665 220.97 2.40 0:45.69 488% 716380 Mon Nov 14 16:47:29 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig72.cmap 129.48268 796.25 7.09 2:01.40 661% 335828 Mon Nov 14 16:39:12 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig87.cmap 13.80842 11.10 0.44 0:05.95 193% 197604 Mon Nov 14 16:37:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig62.cmap 77.27169 337.02 2.96 1:08.41 496% 180276 Mon Nov 14 16:41:44 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig84.cmap 16.16827 45.07 1.19 0:13.23 349% 494360 Mon Nov 14 16:37:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig23.cmap 53.36227 215.64 1.81 0:44.94 483% 728380 Mon Nov 14 16:37:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_4_contig54.cmap 196.65887 651.26 2.83 3:06.62 350% 306792 Mon Nov 14 16:40:20 CST 2022 2022-11-14 22:28:21,698:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4 2022-11-14 22:28:21,699:INFO:Loaded 578 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4 2022-11-14 22:28:21,702:INFO:Found 88 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4 2022-11-14 22:28:21,702:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:28:21,702:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:28:21,704:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_extension1_4 2022-11-14 22:28:21,704:INFO:conda_env=None,conda_source=None 2022-11-14 22:28:21,704:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:28:21,726:INFO: START 1: mrg_exp_extensi, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:28:26,414:INFO: STOP 1: mrg_exp_extensi, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.08m RunTime= 0h 0.04m CPUload=171% bionano2b 2022-11-14 22:28:26,414:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_extension1_4 2022-11-14 22:28:26,414:INFO: mrg_exp_extension1_4_0 completed in: 4.7s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.08m CPU time : 0h 0.08m Begin machine parsable segment for: Cmap_Merge_exp_extension1_4 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_extension1_4_0 4.68755 3.29 0.57 0:02.25 171% 292364 Mon Nov 14 16:41:28 CST 2022 2022-11-14 22:28:27,570:INFO:Generating jobs for CharacterizeD_extension1_4 2022-11-14 22:28:27,571:INFO:CharacterizeD_extension1_4 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4/EXP_EXTENSION1_4.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4/alignref/EXP_EXTENSION1_4 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:28:27,572:INFO:Will NOT run Characterize extension1_4 due to -NoExtCharCheck 2022-11-14 22:28:27,573:INFO:************************* Executing stage 26: Merge4 ************************* 2022-11-14 22:28:27,573:INFO:Characterize extension1_4 results check completed 2022-11-14 22:28:27,573:INFO:Generating jobs for Merge4 2022-11-14 22:28:27,573:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4 2022-11-14 22:28:27,574:INFO:Loaded 582 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4 2022-11-14 22:28:27,575:INFO:Found 88 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4 2022-11-14 22:28:27,575:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4/mergeContigs.txt 2022-11-14 22:28:27,575:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4/mergeContigs.txt 2022-11-14 22:28:27,575:INFO:Merge4 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4/exp_mrg4 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_4/mergeContigs.txt 2022-11-14 22:28:27,575:INFO:Running jobs for Merge4 2022-11-14 22:28:27,576:INFO: Starting Multi-Threaded Process: Merge4 2022-11-14 22:28:27,576:INFO:conda_env=None,conda_source=None 2022-11-14 22:28:27,576:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:28:27,582:INFO: START 1: Merge4, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:28:40,059:INFO: STOP 1: Merge4, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.21m RunTime= 0h 0.19m CPUload=1973% saphyr1a 2022-11-14 22:28:40,059:INFO: Finished Multi-Threaded Process: Merge4 2022-11-14 22:28:40,061:INFO: Merge4 completed in: 12.5s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.21m CPU time : 0h 0.21m Begin machine parsable segment for: Merge4 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge4 12.47655 118.10 106.30 0:11.37 1973% 27711164 Mon Nov 14 16:28:39 CST 2022 2022-11-14 22:28:40,061:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4 2022-11-14 22:28:40,061:INFO:Loaded 89 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4 2022-11-14 22:28:40,062:INFO:Found 87 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4 2022-11-14 22:28:40,063:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:28:40,063:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:28:40,064:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg4 2022-11-14 22:28:40,064:INFO:conda_env=None,conda_source=None 2022-11-14 22:28:40,065:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:28:40,084:INFO: START 1: mrg_exp_mrg4_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:28:44,081:INFO: STOP 1: mrg_exp_mrg4_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.07m RunTime= 0h 0.03m CPUload=117% saphyr1d 2022-11-14 22:28:44,082:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg4 2022-11-14 22:28:44,082:INFO: mrg_exp_mrg4_0 completed in: 4.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.07m CPU time : 0h 0.07m Begin machine parsable segment for: Cmap_Merge_exp_mrg4 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg4_0 3.99742 1.49 0.41 0:01.62 117% 147476 Mon Nov 14 16:51:23 CST 2022 2022-11-14 22:28:45,214:INFO:Generating jobs for CharacterizeD_Merge4 2022-11-14 22:28:45,215:INFO:CharacterizeD_Merge4 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4/EXP_MRG4.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4/alignref/EXP_MRG4 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:28:45,215:INFO:Running jobs for CharacterizeD_Merge4 2022-11-14 22:28:45,216:INFO:************************* Executing stage 27: extension0_5 ************************* 2022-11-14 22:28:45,216:INFO:Starting stage extension0 2022-11-14 22:28:45,216:INFO:extension0 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:28:45,217:INFO:Generating Jobs for extension0, conf.extensionCount= 5 2022-11-14 22:28:45,217:INFO:extensionCount= 5 : Adding lastExtension args 2022-11-14 22:28:45,217:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4 2022-11-14 22:28:45,217:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge4 2022-11-14 22:28:45,218:INFO:conda_env=None,conda_source=None 2022-11-14 22:28:45,218:INFO:Loaded 93 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4 2022-11-14 22:28:45,218:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:28:45,219:INFO:Found 87 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4 2022-11-14 22:28:45,220:INFO:computing modified weights for noES extension stage= extension0 2022-11-14 22:28:45,220:INFO:Calling contigComputeWeights with ExtensionNoES= True 2022-11-14 22:28:45,249:INFO: START 1: CharD_Merge4, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:28:45,251:INFO:Changing maxthreads from 56 to 48, TotThreads from 56 to 56 2022-11-14 22:28:45,251:INFO:MaxWeight = 180.00, witr= 0, threads= 48 (totThreads=56, minthreads=6, maxthreads=48), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_group_weights 2022-11-14 22:28:45,573:INFO:NumHostJobs= 3, TotalJobs= 50, HostWeight= 63.10355931523055, TargetWeight= 61.57305330307693, TotalWeight= 769.6631662884616 2022-11-14 22:28:45,574:INFO:restoring maxthreads from 48 to 56, TotThreads from 56 to 56 2022-11-14 22:28:45,578:INFO:extension0_5 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg4/EXP_MRG4.cmap -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:28:45,579:INFO: Starting Multi-Threaded Process: extension0_5 2022-11-14 22:28:45,579:INFO:conda_env=None,conda_source=None 2022-11-14 22:28:45,579:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:28:45,594:INFO: START 1: extension0 , 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 22:28:45,626:INFO: START 2: extension0 , 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 22:28:45,701:INFO: START 3: extension0 , 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 22:28:45,734:INFO: START 4: extension0 , 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 22:28:45,759:INFO: START 5: extension0 , 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 22:28:45,803:INFO: START 6: extension0 , 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 22:28:45,828:INFO: START 7: extension0 , 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 22:28:45,863:INFO: START 8: extension0 , 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 22:28:45,888:INFO: START 9: extension0 , 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 22:28:45,913:INFO: START 10: extension0 1, 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 22:28:45,937:INFO: START 11: extension0 1, 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 22:28:45,962:INFO: START 12: extension0 1, 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 22:28:45,987:INFO: START 13: extension0 1, 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 22:28:46,019:INFO: START 14: extension0 1, 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 22:28:46,045:INFO: START 15: extension0 1, 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 22:28:46,070:INFO: START 16: extension0 1, 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 22:28:54,043:INFO: STOP 1: CharD_Merge4, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.15m RunTime= 0h 0.13m CPUload=1398% saphyr1a 2022-11-14 22:28:54,043:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge4 2022-11-14 22:28:54,044:INFO:Characterize Merge4 completed : will check Results 2022-11-14 22:28:54,045:INFO: CharD_Merge4 completed in: 8.8s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.15m CPU time : 0h 0.15m Begin machine parsable segment for: CharacterizeD_Merge4 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge4 8.79340 96.69 9.27 0:07.57 1398% 1194940 Mon Nov 14 16:28:53 CST 2022 2022-11-14 22:28:55,511:INFO:Stage Summary: CharacterizeD_Merge4 Number Genome Maps: 87 Total Genome Map Length (Mbp): 1297.620 Mean Genome Map Length (Mbp): 14.915 Median Genome Map Length (Mbp): 2.408 Genome Map N50 (Mbp): 45.978 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.920 Total number of aligned Genome Maps : 2 (0.02) Total Aligned Length (Mbp) : 0.232 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.232 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 22:28:55,511:INFO:Characterize Merge4 results check completed 2022-11-14 22:30:25,670:INFO: STOP 4: extension0 , 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 1.67m RunTime= 0h 1.63m CPUload=2236% bionano2d 2022-11-14 22:30:29,781:INFO: STOP 5: extension0 , 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 1.73m RunTime= 0h 1.67m CPUload=2191% bionano2c 2022-11-14 22:30:29,793:INFO: STOP 2: extension0 , 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 1.74m RunTime= 0h 1.68m CPUload=2148% bionano2b 2022-11-14 22:30:30,167:INFO: STOP 8: extension0 , 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 1.74m RunTime= 0h 1.69m CPUload=2171% bionano1b 2022-11-14 22:30:31,099:INFO: STOP 3: extension0 , 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 1.76m RunTime= 0h 1.68m CPUload=2171% saphyr1b 2022-11-14 22:30:31,233:INFO: STOP 16: extension0 1, 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 1.75m RunTime= 0h 1.70m CPUload=2096% bionano1b 2022-11-14 22:30:32,256:INFO: STOP 12: extension0 1, 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 1.77m RunTime= 0h 1.73m CPUload=2111% bionano2d 2022-11-14 22:30:32,829:INFO: STOP 14: extension0 1, 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 1.78m RunTime= 0h 1.68m CPUload=2147% bionano1c 2022-11-14 22:30:32,897:INFO: STOP 1: extension0 , 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.72m CPUload=2112% saphyr1d 2022-11-14 22:30:34,935:INFO: STOP 10: extension0 1, 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.77m CPUload=2024% bionano2b 2022-11-14 22:30:35,741:INFO: STOP 9: extension0 , 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.78m CPUload=2046% saphyr1d 2022-11-14 22:30:35,754:INFO: STOP 6: extension0 , 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.77m CPUload=2036% bionano1c 2022-11-14 22:30:35,912:INFO: STOP 11: extension0 1, 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.79m CPUload=2016% saphyr1b 2022-11-14 22:30:35,938:INFO: STOP 13: extension0 1, 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.79m CPUload=2043% bionano2c 2022-11-14 22:30:35,940:INFO: STOP 7: extension0 , 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 1.84m RunTime= 0h 1.76m CPUload=2072% saphyr1c 2022-11-14 22:30:35,942:INFO: STOP 15: extension0 1, 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 1.83m RunTime= 0h 1.76m CPUload=2019% saphyr1c 2022-11-14 22:30:35,942:INFO: Finished Multi-Threaded Process: extension0_5 2022-11-14 22:30:35,946:INFO: extension0 1 completed in: 107.3s Result Found extension0 2 completed in: 104.2s Result Found extension0 3 completed in: 105.4s Result Found extension0 4 completed in: 99.9s Result Found extension0 5 completed in: 104.0s Result Found extension0 6 completed in: 110.0s Result Found extension0 7 completed in: 110.1s Result Found extension0 8 completed in: 104.3s Result Found extension0 9 completed in: 109.9s Result Found extension0 10 completed in: 109.0s Result Found extension0 11 completed in: 110.0s Result Found extension0 12 completed in: 106.3s Result Found extension0 13 completed in: 110.0s Result Found extension0 14 completed in: 106.8s Result Found extension0 15 completed in: 109.9s Result Found extension0 16 completed in: 105.2s Result Found Completed 16 jobs on 56 threads Clock time: 0h 1.84m CPU time : 0h 28.54m Begin machine parsable segment for: extension0_5 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension0_5_bnx1 107.30232 2146.29 31.87 1:43.12 2112% 2286380 Mon Nov 14 16:53:09 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx2 104.16646 2132.01 29.48 1:40.60 2148% 2286844 Mon Nov 14 16:43:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx3 105.39797 2160.04 30.01 1:40.86 2171% 2288780 Mon Nov 14 16:24:03 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx4 99.93576 2153.26 29.43 1:37.59 2236% 2289216 Mon Nov 14 16:43:27 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx5 104.02206 2164.01 31.67 1:40.20 2191% 2290496 Mon Nov 14 16:43:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx6 109.95081 2135.40 31.49 1:46.40 2036% 2284952 Mon Nov 14 16:43:36 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx7 110.11155 2161.61 31.81 1:45.81 2072% 2292120 Mon Nov 14 16:46:59 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx8 104.30346 2168.66 34.10 1:41.45 2171% 2297832 Mon Nov 14 16:43:31 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx9 109.85278 2146.66 33.54 1:46.51 2046% 2288820 Mon Nov 14 16:53:13 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx10 109.02221 2118.73 31.24 1:46.19 2024% 2281980 Mon Nov 14 16:43:36 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx11 109.97483 2135.34 32.90 1:47.53 2016% 2286232 Mon Nov 14 16:24:10 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx12 106.29348 2159.29 29.59 1:43.68 2111% 2283336 Mon Nov 14 16:43:33 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx13 109.95060 2160.09 33.96 1:47.37 2043% 2291172 Mon Nov 14 16:43:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx14 106.81037 2136.13 30.27 1:40.90 2147% 2293980 Mon Nov 14 16:43:33 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx15 109.89749 2109.26 28.18 1:45.86 2019% 2283304 Mon Nov 14 16:47:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension0_5_bnx16 105.16314 2108.07 26.94 1:41.85 2096% 2283024 Mon Nov 14 16:43:33 CST 2022 2022-11-14 22:30:35,947:INFO:************************* Executing stage 28: extension1_5 ************************* 2022-11-14 22:30:35,947:INFO:Starting stage extension1 2022-11-14 22:30:35,947:INFO:extension1 maxthreads= 56, minthreads= 6 totalThreads= 56 2022-11-14 22:30:35,948:INFO:Generating Jobs for extension1, conf.extensionCount= 5 2022-11-14 22:30:35,949:INFO:extensionCount= 5: Adding lastExtension args 2022-11-14 22:30:35,949:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5 inputContigPrefix= exp_extension0_5 2022-11-14 22:30:35,960:INFO:extension1_5 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 6 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5/exp_extension1_5 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_group1 -f -stdout -stderr -usecolor 1 -A 8 -S 0.1 -L 70.0 -T 1e-12 -TE 1e-10 -Erefine 2 0.0 -RepeatMask 5 0.01 -RepeatRec 0.7 0.6 1.4 -maptype 0 -extend 2 -extonly 150.0 0.0 -maxExtend 150.0 -MaxCov 80 -MaxCovWt 0 -extTrim 1 -extsplitMinWT 0.01 -splitFilt 0.01 -extsplitNE 0 20.0 -extendWT 20.0 1.0 5 30.0 -extendWTend 0 -extendWTdup 0 -FilterXmapWT 1 -FilterXmapSplit 1 -splitWT 0.01 -keepsplitmaps 0 -CloneLimitLen 300.0 25 -splitcnt -splitrev 3 -CmapSNR -splitsite -MinSplitLen 50.0 -TrimNorm 0 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 1e-2 -outlierNorm0 2 -outlierMax 40. -outlierLambda 20. -outlierType0 1 -endoutlier 1.1e-2 -endoutlierFinal 1.1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 2.9 0.2 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -LRbias 1e0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 14 10 24 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 16.0 3.0 4 10.0 4 20.0 10.0 -BestRefWT 1 -AddFragsWT 0 -MultiMatches 6 1e-12 0.1 6 100.0 -MultiMatchesFilter 2 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-6 1e-2 -outlierRef 1e-3 1e-2 -outlierNormRef 2 -deltaEndRef 4 -LRbias 1e-50 -RefineRange 6 6 -RefineErr 1e-6 0 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 5 -deltaYRef 6 -deltaExtXRef 5 -deltaExtYRef 6 -outlierLambdaRef 10.0 -outlierTypeRef 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_dist 0.01 0.01 -skip_score 100.0 100 -SiteMerge 0 -FN_Refine 1.0 1.5 0.0 0.20 -mres 0.9 -rres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 3 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -RefineOverwrite 0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension0_5/exp_extension0_5_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:30:35,961:INFO: Starting Multi-Threaded Process: extension1_5 2022-11-14 22:30:35,961:INFO:conda_env=None,conda_source=None 2022-11-14 22:30:35,961:INFO: Running 50 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:30:36,055:INFO: START 1: extension1 , 56 Thr, 1 R, 50 T, 0 F, 49 Q 2022-11-14 22:30:36,081:INFO: START 2: extension1 2, 56 Thr, 2 R, 50 T, 0 F, 48 Q 2022-11-14 22:30:36,115:INFO: START 3: extension1 2, 56 Thr, 3 R, 50 T, 0 F, 47 Q 2022-11-14 22:30:36,140:INFO: START 4: extension1 , 6 Thr, 4 R, 50 T, 0 F, 46 Q 2022-11-14 22:30:36,185:INFO: START 5: extension1 , 6 Thr, 5 R, 50 T, 0 F, 45 Q 2022-11-14 22:30:36,210:INFO: START 6: extension1 , 6 Thr, 6 R, 50 T, 0 F, 44 Q 2022-11-14 22:30:36,447:INFO: START 7: extension1 , 6 Thr, 7 R, 50 T, 0 F, 43 Q 2022-11-14 22:30:36,780:INFO: START 8: extension1 , 6 Thr, 8 R, 50 T, 0 F, 42 Q 2022-11-14 22:30:36,805:INFO: START 9: extension1 , 6 Thr, 9 R, 50 T, 0 F, 41 Q 2022-11-14 22:30:36,830:INFO: START 10: extension1 2, 6 Thr, 10 R, 50 T, 0 F, 40 Q 2022-11-14 22:30:36,855:INFO: START 11: extension1 , 6 Thr, 11 R, 50 T, 0 F, 39 Q 2022-11-14 22:30:36,904:INFO: START 12: extension1 2, 6 Thr, 12 R, 50 T, 0 F, 38 Q 2022-11-14 22:30:36,929:INFO: START 13: extension1 , 6 Thr, 13 R, 50 T, 0 F, 37 Q 2022-11-14 22:30:36,955:INFO: START 14: extension1 2, 6 Thr, 14 R, 50 T, 0 F, 36 Q 2022-11-14 22:30:36,979:INFO: START 15: extension1 1, 6 Thr, 15 R, 50 T, 0 F, 35 Q 2022-11-14 22:30:37,006:INFO: START 16: extension1 3, 6 Thr, 16 R, 50 T, 0 F, 34 Q 2022-11-14 22:30:37,031:INFO: START 17: extension1 2, 6 Thr, 17 R, 50 T, 0 F, 33 Q 2022-11-14 22:30:37,067:INFO: START 18: extension1 3, 6 Thr, 18 R, 50 T, 0 F, 32 Q 2022-11-14 22:30:37,092:INFO: START 19: extension1 4, 6 Thr, 19 R, 50 T, 0 F, 31 Q 2022-11-14 22:30:37,116:INFO: START 20: extension1 1, 6 Thr, 20 R, 50 T, 0 F, 30 Q 2022-11-14 22:30:37,150:INFO: START 21: extension1 3, 6 Thr, 21 R, 50 T, 0 F, 29 Q 2022-11-14 22:30:37,176:INFO: START 22: extension1 1, 6 Thr, 22 R, 50 T, 0 F, 28 Q 2022-11-14 22:30:37,201:INFO: START 23: extension1 1, 6 Thr, 23 R, 50 T, 0 F, 27 Q 2022-11-14 22:30:37,226:INFO: START 24: extension1 4, 6 Thr, 24 R, 50 T, 0 F, 26 Q 2022-11-14 22:30:37,251:INFO: START 25: extension1 4, 6 Thr, 25 R, 50 T, 0 F, 25 Q 2022-11-14 22:30:37,276:INFO: START 26: extension1 4, 6 Thr, 26 R, 50 T, 0 F, 24 Q 2022-11-14 22:30:37,302:INFO: START 27: extension1 1, 6 Thr, 27 R, 50 T, 0 F, 23 Q 2022-11-14 22:30:37,327:INFO: START 28: extension1 4, 6 Thr, 28 R, 50 T, 0 F, 22 Q 2022-11-14 22:30:37,373:INFO: START 29: extension1 3, 6 Thr, 29 R, 50 T, 0 F, 21 Q 2022-11-14 22:30:37,399:INFO: START 30: extension1 1, 6 Thr, 30 R, 50 T, 0 F, 20 Q 2022-11-14 22:30:37,426:INFO: START 31: extension1 1, 6 Thr, 31 R, 50 T, 0 F, 19 Q 2022-11-14 22:30:37,453:INFO: START 32: extension1 3, 6 Thr, 32 R, 50 T, 0 F, 18 Q 2022-11-14 22:30:37,479:INFO: START 33: extension1 4, 6 Thr, 33 R, 50 T, 0 F, 17 Q 2022-11-14 22:30:37,517:INFO: START 34: extension1 4, 6 Thr, 34 R, 50 T, 0 F, 16 Q 2022-11-14 22:30:37,542:INFO: START 35: extension1 1, 6 Thr, 35 R, 50 T, 0 F, 15 Q 2022-11-14 22:30:37,567:INFO: START 36: extension1 3, 6 Thr, 36 R, 50 T, 0 F, 14 Q 2022-11-14 22:30:37,592:INFO: START 37: extension1 4, 6 Thr, 37 R, 50 T, 0 F, 13 Q 2022-11-14 22:30:37,618:INFO: START 38: extension1 3, 6 Thr, 38 R, 50 T, 0 F, 12 Q 2022-11-14 22:30:37,776:INFO: START 39: extension1 1, 6 Thr, 39 R, 50 T, 0 F, 11 Q 2022-11-14 22:30:37,801:INFO: START 40: extension1 1, 6 Thr, 40 R, 50 T, 0 F, 10 Q 2022-11-14 22:30:37,826:INFO: START 41: extension1 2, 6 Thr, 41 R, 50 T, 0 F, 9 Q 2022-11-14 22:30:37,851:INFO: START 42: extension1 2, 6 Thr, 42 R, 50 T, 0 F, 8 Q 2022-11-14 22:30:37,876:INFO: START 43: extension1 2, 6 Thr, 43 R, 50 T, 0 F, 7 Q 2022-11-14 22:30:37,912:INFO: START 44: extension1 3, 6 Thr, 44 R, 50 T, 0 F, 6 Q 2022-11-14 22:30:37,937:INFO: START 45: extension1 4, 6 Thr, 45 R, 50 T, 0 F, 5 Q 2022-11-14 22:30:37,962:INFO: START 46: extension1 3, 6 Thr, 46 R, 50 T, 0 F, 4 Q 2022-11-14 22:30:37,987:INFO: START 47: extension1 4, 6 Thr, 47 R, 50 T, 0 F, 3 Q 2022-11-14 22:30:38,058:INFO: START 48: extension1 3, 6 Thr, 48 R, 50 T, 0 F, 2 Q 2022-11-14 22:30:38,084:INFO: START 49: extension1 2, 6 Thr, 49 R, 50 T, 0 F, 1 Q 2022-11-14 22:30:38,108:INFO: START 50: extension1 5, 6 Thr, 50 R, 50 T, 0 F, 0 Q 2022-11-14 22:30:43,561:INFO: STOP 3: extension1 2, 56 Thr, 49 R, 50 T, 1 F, 0 Q TotalTime= 0h 0.12m RunTime= 0h 0.09m CPUload=1131% bionano1a 2022-11-14 22:30:43,628:INFO: STOP 46: extension1 3, 6 Thr, 48 R, 50 T, 2 F, 0 Q TotalTime= 0h 0.09m RunTime= 0h 0.06m CPUload=229% bionano1c 2022-11-14 22:30:44,243:INFO: STOP 37: extension1 4, 6 Thr, 47 R, 50 T, 3 F, 0 Q TotalTime= 0h 0.11m RunTime= 0h 0.07m CPUload=280% bionano2d 2022-11-14 22:30:48,486:INFO: STOP 26: extension1 4, 6 Thr, 46 R, 50 T, 4 F, 0 Q TotalTime= 0h 0.19m RunTime= 0h 0.14m CPUload=413% bionano2d 2022-11-14 22:30:48,876:INFO: STOP 38: extension1 3, 6 Thr, 45 R, 50 T, 5 F, 0 Q TotalTime= 0h 0.19m RunTime= 0h 0.11m CPUload=326% saphyr1d 2022-11-14 22:30:49,419:INFO: STOP 32: extension1 3, 6 Thr, 44 R, 50 T, 6 F, 0 Q TotalTime= 0h 0.20m RunTime= 0h 0.15m CPUload=396% bionano2d 2022-11-14 22:30:58,476:INFO: STOP 2: extension1 2, 56 Thr, 43 R, 50 T, 7 F, 0 Q TotalTime= 0h 0.37m RunTime= 0h 0.33m CPUload=2428% bionano2a 2022-11-14 22:30:58,478:INFO: STOP 1: extension1 , 56 Thr, 42 R, 50 T, 8 F, 0 Q TotalTime= 0h 0.37m RunTime= 0h 0.34m CPUload=1795% bionano1a 2022-11-14 22:30:58,966:INFO: STOP 48: extension1 3, 6 Thr, 41 R, 50 T, 9 F, 0 Q TotalTime= 0h 0.35m RunTime= 0h 0.23m CPUload=351% saphyr1c 2022-11-14 22:31:02,696:INFO: STOP 34: extension1 4, 6 Thr, 40 R, 50 T, 10 F, 0 Q TotalTime= 0h 0.42m RunTime= 0h 0.38m CPUload=412% bionano2b 2022-11-14 22:31:03,627:INFO: STOP 28: extension1 4, 6 Thr, 39 R, 50 T, 11 F, 0 Q TotalTime= 0h 0.44m RunTime= 0h 0.39m CPUload=505% bionano2d 2022-11-14 22:31:15,309:INFO: STOP 21: extension1 3, 6 Thr, 38 R, 50 T, 12 F, 0 Q TotalTime= 0h 0.64m RunTime= 0h 0.16m CPUload=148% bionano1d 2022-11-14 22:31:19,137:INFO: STOP 16: extension1 3, 6 Thr, 37 R, 50 T, 13 F, 0 Q TotalTime= 0h 0.70m RunTime= 0h 0.29m CPUload=175% bionano1d 2022-11-14 22:31:19,173:INFO: STOP 12: extension1 2, 6 Thr, 36 R, 50 T, 14 F, 0 Q TotalTime= 0h 0.70m RunTime= 0h 0.39m CPUload=196% bionano1d 2022-11-14 22:31:24,165:INFO: STOP 35: extension1 1, 6 Thr, 35 R, 50 T, 15 F, 0 Q TotalTime= 0h 0.78m RunTime= 0h 0.66m CPUload=412% saphyr1c 2022-11-14 22:31:26,627:INFO: STOP 17: extension1 2, 6 Thr, 34 R, 50 T, 16 F, 0 Q TotalTime= 0h 0.83m RunTime= 0h 0.49m CPUload=164% bionano1d 2022-11-14 22:31:27,744:INFO: STOP 18: extension1 3, 6 Thr, 33 R, 50 T, 17 F, 0 Q TotalTime= 0h 0.84m RunTime= 0h 0.54m CPUload=167% bionano1d 2022-11-14 22:31:28,407:INFO: STOP 25: extension1 4, 6 Thr, 32 R, 50 T, 18 F, 0 Q TotalTime= 0h 0.85m RunTime= 0h 0.61m CPUload=71% bionano1d 2022-11-14 22:31:30,039:INFO: STOP 44: extension1 3, 6 Thr, 31 R, 50 T, 19 F, 0 Q TotalTime= 0h 0.87m RunTime= 0h 0.81m CPUload=474% saphyr1d 2022-11-14 22:31:30,063:INFO: STOP 41: extension1 2, 6 Thr, 30 R, 50 T, 20 F, 0 Q TotalTime= 0h 0.87m RunTime= 0h 0.75m CPUload=409% saphyr1c 2022-11-14 22:31:39,614:INFO: STOP 50: extension1 5, 6 Thr, 29 R, 50 T, 21 F, 0 Q TotalTime= 0h 1.03m RunTime= 0h 0.96m CPUload=571% bionano2d 2022-11-14 22:31:42,270:INFO: STOP 33: extension1 4, 6 Thr, 28 R, 50 T, 22 F, 0 Q TotalTime= 0h 1.08m RunTime= 0h 1.02m CPUload=490% saphyr1d 2022-11-14 22:31:45,645:INFO: STOP 40: extension1 1, 6 Thr, 27 R, 50 T, 23 F, 0 Q TotalTime= 0h 1.13m RunTime= 0h 1.08m CPUload=495% bionano2b 2022-11-14 22:31:48,590:INFO: STOP 47: extension1 4, 6 Thr, 26 R, 50 T, 24 F, 0 Q TotalTime= 0h 1.18m RunTime= 0h 1.13m CPUload=489% bionano2b 2022-11-14 22:31:54,641:INFO: STOP 43: extension1 2, 6 Thr, 25 R, 50 T, 25 F, 0 Q TotalTime= 0h 1.28m RunTime= 0h 1.24m CPUload=561% bionano2d 2022-11-14 22:31:59,886:INFO: STOP 45: extension1 4, 6 Thr, 24 R, 50 T, 26 F, 0 Q TotalTime= 0h 1.37m RunTime= 0h 1.32m CPUload=595% saphyr1b 2022-11-14 22:32:19,567:INFO: STOP 8: extension1 , 6 Thr, 23 R, 50 T, 27 F, 0 Q TotalTime= 0h 1.71m RunTime= 0h 1.67m CPUload=296% bionano1d 2022-11-14 22:32:22,444:INFO: STOP 29: extension1 3, 6 Thr, 22 R, 50 T, 28 F, 0 Q TotalTime= 0h 1.75m RunTime= 0h 1.69m CPUload=680% saphyr1d 2022-11-14 22:32:26,959:INFO: STOP 39: extension1 1, 6 Thr, 21 R, 50 T, 29 F, 0 Q TotalTime= 0h 1.82m RunTime= 0h 1.77m CPUload=641% saphyr1b 2022-11-14 22:32:33,211:INFO: STOP 30: extension1 1, 6 Thr, 20 R, 50 T, 30 F, 0 Q TotalTime= 0h 1.93m RunTime= 0h 1.82m CPUload=636% saphyr1c 2022-11-14 22:32:35,933:INFO: STOP 11: extension1 , 6 Thr, 19 R, 50 T, 31 F, 0 Q TotalTime= 0h 1.98m RunTime= 0h 1.87m CPUload=277% bionano1d 2022-11-14 22:32:37,034:INFO: STOP 4: extension1 , 6 Thr, 18 R, 50 T, 32 F, 0 Q TotalTime= 0h 2.01m RunTime= 0h 1.94m CPUload=281% bionano1d 2022-11-14 22:32:41,640:INFO: STOP 24: extension1 4, 6 Thr, 17 R, 50 T, 33 F, 0 Q TotalTime= 0h 2.07m RunTime= 0h 2.03m CPUload=846% bionano2d 2022-11-14 22:32:49,663:INFO: STOP 22: extension1 1, 6 Thr, 16 R, 50 T, 34 F, 0 Q TotalTime= 0h 2.21m RunTime= 0h 2.17m CPUload=799% bionano2d 2022-11-14 22:33:45,035:INFO: STOP 27: extension1 1, 6 Thr, 15 R, 50 T, 35 F, 0 Q TotalTime= 0h 3.13m RunTime= 0h 2.37m CPUload=256% bionano1d 2022-11-14 22:33:45,048:INFO: STOP 20: extension1 1, 6 Thr, 14 R, 50 T, 36 F, 0 Q TotalTime= 0h 3.13m RunTime= 0h 2.96m CPUload=269% bionano1d 2022-11-14 22:33:49,171:INFO: STOP 49: extension1 2, 6 Thr, 13 R, 50 T, 37 F, 0 Q TotalTime= 0h 3.18m RunTime= 0h 2.38m CPUload=238% bionano1d 2022-11-14 22:34:05,406:INFO: STOP 15: extension1 1, 6 Thr, 12 R, 50 T, 38 F, 0 Q TotalTime= 0h 3.47m RunTime= 0h 3.38m CPUload=284% bionano1d 2022-11-14 22:34:05,409:INFO: STOP 14: extension1 2, 6 Thr, 11 R, 50 T, 39 F, 0 Q TotalTime= 0h 3.47m RunTime= 0h 3.37m CPUload=209% bionano1d 2022-11-14 22:34:23,607:INFO: STOP 5: extension1 , 6 Thr, 10 R, 50 T, 40 F, 0 Q TotalTime= 0h 3.79m RunTime= 0h 3.75m CPUload=296% bionano1d 2022-11-14 22:34:37,702:INFO: STOP 19: extension1 4, 6 Thr, 9 R, 50 T, 41 F, 0 Q TotalTime= 0h 4.01m RunTime= 0h 3.75m CPUload=212% bionano1d 2022-11-14 22:34:43,763:INFO: STOP 36: extension1 3, 6 Thr, 8 R, 50 T, 42 F, 0 Q TotalTime= 0h 4.10m RunTime= 0h 3.33m CPUload=263% bionano1d 2022-11-14 22:34:46,862:INFO: STOP 10: extension1 2, 6 Thr, 7 R, 50 T, 43 F, 0 Q TotalTime= 0h 4.17m RunTime= 0h 4.11m CPUload=310% bionano1d 2022-11-14 22:34:53,879:INFO: STOP 42: extension1 2, 6 Thr, 6 R, 50 T, 44 F, 0 Q TotalTime= 0h 4.27m RunTime= 0h 3.47m CPUload=306% bionano1d 2022-11-14 22:34:57,965:INFO: STOP 9: extension1 , 6 Thr, 5 R, 50 T, 45 F, 0 Q TotalTime= 0h 4.35m RunTime= 0h 4.30m CPUload=355% bionano1d 2022-11-14 22:35:22,121:INFO: STOP 23: extension1 1, 6 Thr, 4 R, 50 T, 46 F, 0 Q TotalTime= 0h 4.75m RunTime= 0h 4.59m CPUload=354% bionano1d 2022-11-14 22:35:28,919:INFO: STOP 7: extension1 , 6 Thr, 3 R, 50 T, 47 F, 0 Q TotalTime= 0h 4.87m RunTime= 0h 4.82m CPUload=357% bionano1d 2022-11-14 22:35:30,991:INFO: STOP 13: extension1 , 6 Thr, 2 R, 50 T, 48 F, 0 Q TotalTime= 0h 4.90m RunTime= 0h 4.80m CPUload=343% bionano1d 2022-11-14 22:35:36,024:INFO: STOP 6: extension1 , 6 Thr, 1 R, 50 T, 49 F, 0 Q TotalTime= 0h 5.00m RunTime= 0h 4.96m CPUload=372% bionano1d 2022-11-14 22:35:54,107:INFO: STOP 31: extension1 1, 6 Thr, 0 R, 50 T, 50 F, 0 Q TotalTime= 0h 5.28m RunTime= 0h 4.51m CPUload=421% bionano1d 2022-11-14 22:35:54,108:INFO: Finished Multi-Threaded Process: extension1_5 2022-11-14 22:35:54,125:INFO: extension1 1 completed in: 22.4s Result Found extension1 24 completed in: 22.4s Result Found extension1 25 completed in: 7.4s Result Found extension1 2 completed in: 120.9s Result Found extension1 3 completed in: 227.4s Result Found extension1 4 completed in: 299.8s Result Found extension1 5 completed in: 292.5s Result Found extension1 6 completed in: 102.8s Result Found extension1 7 completed in: 261.2s Result Found extension1 26 completed in: 250.0s Result Found extension1 8 completed in: 119.1s Result Found extension1 27 completed in: 42.3s Result Found extension1 9 completed in: 294.1s Result Found extension1 28 completed in: 208.5s Result Found extension1 10 completed in: 208.4s Result Found extension1 39 completed in: 42.1s Result Found extension1 29 completed in: 49.6s Result Found extension1 30 completed in: 50.7s Result Found extension1 40 completed in: 240.6s Result Found extension1 11 completed in: 187.9s Result Found extension1 31 completed in: 38.2s Result Found extension1 12 completed in: 132.5s Result Found extension1 13 completed in: 284.9s Result Found extension1 41 completed in: 124.4s Result Found extension1 42 completed in: 51.2s Result Found extension1 43 completed in: 11.2s Result Found extension1 14 completed in: 187.7s Result Found extension1 44 completed in: 26.3s Result Found extension1 32 completed in: 105.1s Result Found extension1 15 completed in: 115.8s Result Found extension1 16 completed in: 316.7s Result Found extension1 33 completed in: 12.0s Result Found extension1 45 completed in: 64.8s Result Found extension1 46 completed in: 25.2s Result Found extension1 17 completed in: 46.6s Result Found extension1 34 completed in: 246.2s Result Found extension1 47 completed in: 6.6s Result Found extension1 35 completed in: 11.3s Result Found extension1 18 completed in: 109.2s Result Found extension1 19 completed in: 67.8s Result Found extension1 20 completed in: 52.2s Result Found extension1 21 completed in: 256.0s Result Found extension1 22 completed in: 76.8s Result Found extension1 36 completed in: 52.1s Result Found extension1 48 completed in: 81.9s Result Found extension1 37 completed in: 5.7s Result Found extension1 49 completed in: 70.6s Result Found extension1 38 completed in: 20.9s Result Found extension1 23 completed in: 191.1s Result Found extension1 50 completed in: 61.5s Result Found Completed 50 jobs on 56 threads Clock time: 0h 5.30m CPU time : 1h 38.38m Begin machine parsable segment for: extension1_5 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_extension1_5_contig1.cmap 22.42279 357.04 5.31 0:20.18 1795% 1304948 Mon Nov 14 16:44:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig87.cmap 22.39519 459.60 25.50 0:19.97 2428% 824908 Mon Nov 14 16:44:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig80.cmap 7.44545 47.69 10.79 0:05.16 1131% 246836 Mon Nov 14 16:43:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig6.cmap 120.89388 324.70 2.93 1:56.24 281% 1079804 Mon Nov 14 16:45:37 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig2.cmap 227.42165 655.06 10.56 3:44.22 296% 1553444 Mon Nov 14 16:47:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig4.cmap 299.81361 1100.21 5.83 4:56.65 372% 1304596 Mon Nov 14 16:48:38 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig8.cmap 292.47114 1027.45 5.27 4:49.27 357% 1142304 Mon Nov 14 16:48:30 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig15.cmap 102.78689 292.41 3.39 1:39.76 296% 1001896 Mon Nov 14 16:45:21 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig9.cmap 261.16006 910.46 5.39 4:17.98 355% 1082600 Mon Nov 14 16:48:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig60.cmap 250.03187 762.49 2.31 4:06.39 310% 220104 Mon Nov 14 16:47:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig13.cmap 119.07823 307.41 3.11 1:51.90 277% 1031872 Mon Nov 14 16:45:36 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig48.cmap 42.26794 45.23 0.79 0:23.38 196% 311772 Mon Nov 14 16:44:09 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig7.cmap 294.06116 979.74 7.46 4:47.42 343% 1471480 Mon Nov 14 16:48:33 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig40.cmap 208.45391 419.92 2.17 3:21.04 209% 669644 Mon Nov 14 16:47:07 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig3.cmap 208.42670 566.89 8.65 3:22.23 284% 1394736 Mon Nov 14 16:47:08 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig42.cmap 42.13122 29.74 0.79 0:17.37 175% 315156 Mon Nov 14 16:44:04 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig37.cmap 49.59637 47.14 0.92 0:29.16 164% 315000 Mon Nov 14 16:44:16 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig31.cmap 50.67763 53.58 0.86 0:32.47 167% 305068 Mon Nov 14 16:44:21 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig67.cmap 240.60975 474.50 1.90 3:43.89 212% 256296 Mon Nov 14 16:47:40 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig5.cmap 187.93154 472.14 6.29 2:57.21 269% 1311060 Mon Nov 14 16:46:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig82.cmap 38.15899 14.14 0.43 0:09.81 148% 184748 Mon Nov 14 16:43:59 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig17.cmap 132.48718 1031.70 6.30 2:09.81 799% 955288 Mon Nov 14 16:45:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig11.cmap 284.91962 965.47 8.64 4:34.80 354% 1659704 Mon Nov 14 16:48:24 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig78.cmap 124.41426 1024.96 5.44 2:01.74 846% 261092 Mon Nov 14 16:45:43 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig63.cmap 51.15553 25.08 0.75 0:36.00 71% 279384 Mon Nov 14 16:44:25 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig44.cmap 11.21000 34.16 0.75 0:08.43 413% 340440 Mon Nov 14 16:43:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig16.cmap 187.73269 360.93 3.32 2:22.06 256% 1395092 Mon Nov 14 16:46:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig66.cmap 26.30019 118.15 1.16 0:23.59 505% 323988 Mon Nov 14 16:44:05 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig33.cmap 105.07149 684.76 5.47 1:41.37 680% 879504 Mon Nov 14 16:55:00 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig14.cmap 115.81237 687.71 7.39 1:49.18 636% 1616960 Mon Nov 14 16:48:59 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig12.cmap 316.68148 1132.72 6.43 4:30.02 421% 1010352 Mon Nov 14 16:48:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig69.cmap 11.96583 35.06 0.64 0:09.00 396% 300768 Mon Nov 14 16:43:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig62.cmap 64.79103 297.83 2.15 1:01.12 490% 322488 Mon Nov 14 16:54:20 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig75.cmap 25.17859 93.51 1.48 0:23.02 412% 331328 Mon Nov 14 16:44:05 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig10.cmap 46.62287 159.71 2.22 0:39.26 412% 1094132 Mon Nov 14 16:47:49 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig79.cmap 246.19559 522.35 2.42 3:18.94 263% 498308 Mon Nov 14 16:47:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig77.cmap 6.64989 11.68 0.49 0:04.33 280% 209816 Mon Nov 14 16:43:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig50.cmap 11.25759 21.55 0.70 0:06.81 326% 286252 Mon Nov 14 16:53:26 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig20.cmap 109.18355 673.68 5.91 1:46.01 641% 1475492 Mon Nov 14 16:26:01 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig22.cmap 67.84421 317.39 2.23 1:04.51 495% 781672 Mon Nov 14 16:44:47 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig18.cmap 52.23712 181.75 3.49 0:45.29 409% 1307140 Mon Nov 14 16:47:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig19.cmap 256.02747 631.52 5.33 3:27.54 306% 1239176 Mon Nov 14 16:47:55 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig21.cmap 76.76454 414.94 3.09 1:14.45 561% 829660 Mon Nov 14 16:44:56 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig47.cmap 52.12666 228.54 2.36 0:48.64 474% 716192 Mon Nov 14 16:54:08 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig72.cmap 81.94845 467.40 3.53 1:19.02 595% 230580 Mon Nov 14 16:25:35 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig86.cmap 5.66652 7.47 0.54 0:03.49 229% 197560 Mon Nov 14 16:43:46 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig29.cmap 70.60252 326.46 3.75 1:07.39 489% 312776 Mon Nov 14 16:44:50 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig83.cmap 20.90845 46.47 1.09 0:13.52 351% 494348 Mon Nov 14 16:47:24 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig23.cmap 191.08670 336.73 2.46 2:21.93 238% 728312 Mon Nov 14 16:46:51 CST 2022 time_line jobs+10230251+startPipeline_exp_extension1_5_contig51.cmap 61.50493 329.48 1.05 0:57.88 571% 190900 Mon Nov 14 16:44:41 CST 2022 2022-11-14 22:35:54,125:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5 2022-11-14 22:35:54,126:INFO:Loaded 572 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5 2022-11-14 22:35:54,128:INFO:Found 87 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5 2022-11-14 22:35:54,129:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:35:54,129:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:35:54,131:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_extension1_5 2022-11-14 22:35:54,131:INFO:conda_env=None,conda_source=None 2022-11-14 22:35:54,131:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:35:54,143:INFO: START 1: mrg_exp_extensi, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:35:59,373:INFO: STOP 1: mrg_exp_extensi, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.09m RunTime= 0h 0.03m CPUload=175% bionano2c 2022-11-14 22:35:59,374:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_extension1_5 2022-11-14 22:35:59,374:INFO: mrg_exp_extension1_5_0 completed in: 5.2s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.09m CPU time : 0h 0.09m Begin machine parsable segment for: Cmap_Merge_exp_extension1_5 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_extension1_5_0 5.23010 3.03 0.48 0:02.00 175% 282284 Mon Nov 14 16:49:01 CST 2022 2022-11-14 22:36:00,543:INFO:Generating jobs for CharacterizeD_extension1_5 2022-11-14 22:36:00,544:INFO:CharacterizeD_extension1_5 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5/EXP_EXTENSION1_5.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5/alignref/EXP_EXTENSION1_5 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:36:00,545:INFO:Will NOT run Characterize extension1_5 due to -NoExtCharCheck 2022-11-14 22:36:00,545:INFO:************************* Executing stage 29: Merge5 ************************* 2022-11-14 22:36:00,546:INFO:Characterize extension1_5 results check completed 2022-11-14 22:36:00,546:INFO:Generating jobs for Merge5 2022-11-14 22:36:00,546:INFO:extensionCount= 5: Adding lastMerge args 2022-11-14 22:36:00,546:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5 2022-11-14 22:36:00,547:INFO:Loaded 576 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5 2022-11-14 22:36:00,548:INFO:Found 87 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5 2022-11-14 22:36:00,548:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5/mergeContigs.txt 2022-11-14 22:36:00,548:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5/mergeContigs.txt 2022-11-14 22:36:00,548:INFO:Merge5 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5/exp_mrg5 -f -stdout -stderr -T 1e-16 -A 12 -S -9999 -biaswt 0.3 -biaswtOutlier 0.0 -mres 1.2 -res 2.6 -FP 0.12 -FN 0.012 -sf 0.1 -sd 0.0 -sr 0.01 -outlier 3e-3 -outlierBC -endoutlier 3e-2 -KL 1.5 -KF 1.5 -pairmerge 160 0.0 100.0 100.0 100.0 0 -outlierBalanced 10 -pairmergeExcludeOutliers 1 -pairmergeOverlapped 100 2.0 -pairmergeRepeat -TrimmedNoMerge 400.0 5.0 -Truncate 300.0 25 15.0 -MaxPalindrome 580.0 60 280.0 -MaxInvPalindrome 290.0 30 140.0 -randomize 1 -CIDrenumber 1 -RepeatMask 5 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -outlierExtend 4 60 -RAmem 4 300 -hashgen 5 4 2.4 1.4 0.05 10.0 1 1 -hash -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -hashdelta 46 -hashrange 0 -f -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -pairmerge 140.0 0.0 100.0 100.0 100.0 0 -Truncate 0.0 25 20.0 -TrimmedNoMerge 0.0 50.0 -maxthreads 112 -if /home/bionano/access/local/jobs/10230251/output/contigs/exp_extension1_5/mergeContigs.txt 2022-11-14 22:36:00,548:INFO:Running jobs for Merge5 2022-11-14 22:36:00,549:INFO: Starting Multi-Threaded Process: Merge5 2022-11-14 22:36:00,549:INFO:conda_env=None,conda_source=None 2022-11-14 22:36:00,549:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:36:00,565:INFO: START 1: Merge5, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:36:15,063:INFO: STOP 1: Merge5, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.24m RunTime= 0h 0.22m CPUload=1860% saphyr1a 2022-11-14 22:36:15,065:INFO: Finished Multi-Threaded Process: Merge5 2022-11-14 22:36:15,066:INFO: Merge5 completed in: 14.5s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.24m CPU time : 0h 0.24m Begin machine parsable segment for: Merge5 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_Merge5 14.49728 125.54 117.98 0:13.09 1860% 27713284 Mon Nov 14 16:36:14 CST 2022 2022-11-14 22:36:15,066:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5 2022-11-14 22:36:15,067:INFO:Loaded 84 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5 2022-11-14 22:36:15,068:INFO:Found 82 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5 2022-11-14 22:36:15,069:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:36:15,069:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 22:36:15,070:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_mrg5 2022-11-14 22:36:15,071:INFO:conda_env=None,conda_source=None 2022-11-14 22:36:15,071:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 22:36:15,076:INFO: START 1: mrg_exp_mrg5_0, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:36:19,086:INFO: STOP 1: mrg_exp_mrg5_0, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.07m RunTime= 0h 0.03m CPUload=112% bionano1c 2022-11-14 22:36:19,086:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_mrg5 2022-11-14 22:36:19,087:INFO: mrg_exp_mrg5_0 completed in: 4.0s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.07m CPU time : 0h 0.07m Begin machine parsable segment for: Cmap_Merge_exp_mrg5 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_mrg5_0 4.00849 1.44 0.31 0:01.56 112% 147868 Mon Nov 14 16:49:21 CST 2022 2022-11-14 22:36:20,250:INFO:Generating jobs for CharacterizeD_Merge5 2022-11-14 22:36:20,250:INFO:CharacterizeD_Merge5 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5/EXP_MRG5.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5/alignref/EXP_MRG5 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 2022-11-14 22:36:20,251:INFO:Running jobs for CharacterizeD_Merge5 2022-11-14 22:36:20,255:INFO:************************* Executing stage 30: refineFinal0 ************************* 2022-11-14 22:36:20,255:INFO:Starting stage refineFinal0 2022-11-14 22:36:20,256:INFO:refineFinal0 maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 22:36:20,256:INFO:Generating Jobs for refineFinal0, conf.extensionCount= 5 2022-11-14 22:36:20,257:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5 2022-11-14 22:36:20,257:INFO: Starting Multi-Threaded Process: CharacterizeD_Merge5 2022-11-14 22:36:20,257:INFO:conda_env=None,conda_source=None 2022-11-14 22:36:20,257:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:36:20,257:INFO:Loaded 88 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5 2022-11-14 22:36:20,259:INFO:Found 82 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5 2022-11-14 22:36:20,259:INFO:Calling contigComputeWeights with ExtensionNoES= False 2022-11-14 22:36:20,283:INFO: START 1: CharD_Merge5, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 22:36:20,291:INFO:MaxWeight = 12.00, witr= 0, threads= 56 (totThreads=56, minthreads=14, maxthreads=56), weights= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_group_weights 2022-11-14 22:36:20,487:INFO:NumHostJobs= 4, TotalJobs= 82, HostWeight= 1185.8413346680832, TargetWeight= 507.80049586663296, TotalWeight= 6347.5061983329115 2022-11-14 22:36:20,492:INFO:refineFinal0 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -i /home/bionano/access/local/jobs/10230251/output/all_1_of_16.bnx -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx1 -f -stdout -stderr -maxthreads 48 -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_mrg5/EXP_MRG5.cmap -T 1e-12 -usecolor 1 -A 5 -S 0 -L 80 -maptype 0 -extend 1 -MaxCov 100 -MaxCovWt 0 -contigsplit 0.2 0.029 ID -splitcnt -splitrev 3 -splitsite -MinSplitLen 50.0 -TrimNorm 2 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 3e-3 -outlierLambda 20.0 -outlierType0 0 -endoutlier 1e-2 -skip_dist 0.01 0.01 -endoutlierFinal 1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 3.9 0.2 -EndTrimCQ 1 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 25 10 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 -BestRefWT 1 -AddFragsWT 1 -MultiMatches 0 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-3 1e-2 -outlierRef 3e-4 3e-3 -LRbias 1e0 -RefineRange 6 6 -RefineErr 1e-6 1e-6 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 6 -deltaYRef 6 -deltaExtXRef 8 -deltaExtYRef 8 -outlierLambdaRef 10.0 -outlierTypeRef 1 -outlierLambdaSwitch 1e4 3.0 -outlierTypeSwitch 1 1 -endoutlierSwitch 1e-24 1e-3 -RefineSwitchFade 2 -LRbiasSwitch 1e0 1e0 -refineDefer 1 -HapSiteRes 1.0 -HapSiteResDelay 2.0 11 1 -HapSiteUnphased 12.0 1e-20 -HapMinCov 10 0.25 0.7 50.0 1e-25 0.20 1e-50 1.5 4.0 2 -HapThresh 6 1 6 100.0 1.0 1.0 -HapIndelMerge -HapIndelHiRes 1 2 -HapFilterLast 1 -HapMergeSNPs 1 -HapIndelSkip 50 10 1.0 0.05 -HapMinLL 1.0 0.1 0.1 1.0 1.0 1.0 -HapEndTrim 3.9 2.0 -HapFast 5 -HapLocalStop 3 1 -MPmem 3 10 -SplitHmap 1 -RefineHmap 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -FN_Refine 1.0 1.0 0.0 0.0 -rres 0.9 -mres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 0 -nostat -BNXnoRunData 1 -MapScale 0.03 1 -ScaleDelta 0.03 1 -hashScaleDelta 2 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -refine 0 -grouped /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_group_manifest -mapped /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx1/ -output-filter .*.bnx$ -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:36:20,492:INFO: Starting Multi-Threaded Process: refineFinal0 2022-11-14 22:36:20,493:INFO:conda_env=None,conda_source=None 2022-11-14 22:36:20,493:INFO: Running 16 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:36:20,508:INFO: START 1: refineFinal0 , 48 Thr, 1 R, 16 T, 0 F, 15 Q 2022-11-14 22:36:20,534:INFO: START 2: refineFinal0 , 48 Thr, 2 R, 16 T, 0 F, 14 Q 2022-11-14 22:36:20,559:INFO: START 3: refineFinal0 , 48 Thr, 3 R, 16 T, 0 F, 13 Q 2022-11-14 22:36:20,584:INFO: START 4: refineFinal0 , 48 Thr, 4 R, 16 T, 0 F, 12 Q 2022-11-14 22:36:20,609:INFO: START 5: refineFinal0 , 48 Thr, 5 R, 16 T, 0 F, 11 Q 2022-11-14 22:36:20,634:INFO: START 6: refineFinal0 , 48 Thr, 6 R, 16 T, 0 F, 10 Q 2022-11-14 22:36:20,660:INFO: START 7: refineFinal0 , 48 Thr, 7 R, 16 T, 0 F, 9 Q 2022-11-14 22:36:20,686:INFO: START 8: refineFinal0 , 48 Thr, 8 R, 16 T, 0 F, 8 Q 2022-11-14 22:36:20,711:INFO: START 9: refineFinal0 , 48 Thr, 9 R, 16 T, 0 F, 7 Q 2022-11-14 22:36:20,736:INFO: START 10: refineFinal0 , 48 Thr, 10 R, 16 T, 0 F, 6 Q 2022-11-14 22:36:20,771:INFO: START 11: refineFinal0 , 48 Thr, 11 R, 16 T, 0 F, 5 Q 2022-11-14 22:36:20,796:INFO: START 12: refineFinal0 , 48 Thr, 12 R, 16 T, 0 F, 4 Q 2022-11-14 22:36:20,821:INFO: START 13: refineFinal0 , 48 Thr, 13 R, 16 T, 0 F, 3 Q 2022-11-14 22:36:20,846:INFO: START 14: refineFinal0 , 48 Thr, 14 R, 16 T, 0 F, 2 Q 2022-11-14 22:36:20,871:INFO: START 15: refineFinal0 , 48 Thr, 15 R, 16 T, 0 F, 1 Q 2022-11-14 22:36:20,896:INFO: START 16: refineFinal0 , 48 Thr, 16 R, 16 T, 0 F, 0 Q 2022-11-14 22:36:29,040:INFO: STOP 1: CharD_Merge5, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.15m RunTime= 0h 0.12m CPUload=1465% saphyr1a 2022-11-14 22:36:29,040:INFO: Finished Multi-Threaded Process: CharacterizeD_Merge5 2022-11-14 22:36:29,041:INFO:Characterize Merge5 completed : will check Results 2022-11-14 22:36:29,042:INFO: CharD_Merge5 completed in: 8.8s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.15m CPU time : 0h 0.15m Begin machine parsable segment for: CharacterizeD_Merge5 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharD_Merge5 8.75602 93.84 9.22 0:07.03 1465% 1186604 Mon Nov 14 16:36:28 CST 2022 2022-11-14 22:36:30,617:INFO:Stage Summary: CharacterizeD_Merge5 Number Genome Maps: 82 Total Genome Map Length (Mbp): 1296.662 Mean Genome Map Length (Mbp): 15.813 Median Genome Map Length (Mbp): 3.211 Genome Map N50 (Mbp): 46.139 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.919 Total number of aligned Genome Maps : 2 (0.02) Total Aligned Length (Mbp) : 0.232 Total Aligned Length / Reference Length: 0.000 Total Unique Aligned Length (Mbp) : 0.232 Total Unique Aligned Length / Reference Length: 0.000 2022-11-14 22:36:30,618:INFO:Characterize Merge5 results check completed 2022-11-14 22:40:52,415:INFO: STOP 15: refineFinal0 , 48 Thr, 15 R, 16 T, 1 F, 0 Q TotalTime= 0h 4.53m RunTime= 0h 4.49m CPUload=2261% saphyr1c 2022-11-14 22:40:52,495:INFO: STOP 7: refineFinal0 , 48 Thr, 14 R, 16 T, 2 F, 0 Q TotalTime= 0h 4.53m RunTime= 0h 4.50m CPUload=2273% saphyr1c 2022-11-14 22:40:57,697:INFO: STOP 5: refineFinal0 , 48 Thr, 13 R, 16 T, 3 F, 0 Q TotalTime= 0h 4.62m RunTime= 0h 4.58m CPUload=2239% bionano1b 2022-11-14 22:40:58,275:INFO: STOP 4: refineFinal0 , 48 Thr, 12 R, 16 T, 4 F, 0 Q TotalTime= 0h 4.63m RunTime= 0h 4.57m CPUload=2233% saphyr1d 2022-11-14 22:40:59,185:INFO: STOP 6: refineFinal0 , 48 Thr, 11 R, 16 T, 5 F, 0 Q TotalTime= 0h 4.64m RunTime= 0h 4.55m CPUload=2244% saphyr1b 2022-11-14 22:40:59,374:INFO: STOP 12: refineFinal0 , 48 Thr, 10 R, 16 T, 6 F, 0 Q TotalTime= 0h 4.64m RunTime= 0h 4.57m CPUload=2252% saphyr1d 2022-11-14 22:40:59,474:INFO: STOP 13: refineFinal0 , 48 Thr, 9 R, 16 T, 7 F, 0 Q TotalTime= 0h 4.64m RunTime= 0h 4.58m CPUload=2245% saphyr1b 2022-11-14 22:40:59,960:INFO: STOP 14: refineFinal0 , 48 Thr, 8 R, 16 T, 8 F, 0 Q TotalTime= 0h 4.65m RunTime= 0h 4.62m CPUload=2244% bionano1b 2022-11-14 22:41:00,334:INFO: STOP 9: refineFinal0 , 48 Thr, 7 R, 16 T, 9 F, 0 Q TotalTime= 0h 4.66m RunTime= 0h 4.59m CPUload=2227% bionano1c 2022-11-14 22:41:00,369:INFO: STOP 1: refineFinal0 , 48 Thr, 6 R, 16 T, 10 F, 0 Q TotalTime= 0h 4.66m RunTime= 0h 4.64m CPUload=2220% bionano1c 2022-11-14 22:41:00,875:INFO: STOP 3: refineFinal0 , 48 Thr, 5 R, 16 T, 11 F, 0 Q TotalTime= 0h 4.67m RunTime= 0h 4.61m CPUload=2225% bionano2b 2022-11-14 22:41:00,899:INFO: STOP 11: refineFinal0 , 48 Thr, 4 R, 16 T, 12 F, 0 Q TotalTime= 0h 4.67m RunTime= 0h 4.61m CPUload=2231% bionano2b 2022-11-14 22:41:01,043:INFO: STOP 8: refineFinal0 , 48 Thr, 3 R, 16 T, 13 F, 0 Q TotalTime= 0h 4.67m RunTime= 0h 4.64m CPUload=2242% bionano2d 2022-11-14 22:41:01,055:INFO: STOP 16: refineFinal0 , 48 Thr, 2 R, 16 T, 14 F, 0 Q TotalTime= 0h 4.67m RunTime= 0h 4.64m CPUload=2200% bionano2d 2022-11-14 22:41:02,774:INFO: STOP 2: refineFinal0 , 48 Thr, 1 R, 16 T, 15 F, 0 Q TotalTime= 0h 4.70m RunTime= 0h 4.66m CPUload=2254% bionano2c 2022-11-14 22:41:02,777:INFO: STOP 10: refineFinal0 , 48 Thr, 0 R, 16 T, 16 F, 0 Q TotalTime= 0h 4.70m RunTime= 0h 4.66m CPUload=2230% bionano2c 2022-11-14 22:41:02,777:INFO: Finished Multi-Threaded Process: refineFinal0 2022-11-14 22:41:02,781:INFO: refineFinal0 1 completed in: 279.9s Result Found refineFinal0 2 completed in: 282.2s Result Found refineFinal0 3 completed in: 280.3s Result Found refineFinal0 4 completed in: 277.7s Result Found refineFinal0 5 completed in: 277.1s Result Found refineFinal0 6 completed in: 278.6s Result Found refineFinal0 7 completed in: 271.8s Result Found refineFinal0 8 completed in: 280.4s Result Found refineFinal0 9 completed in: 279.6s Result Found refineFinal0 10 completed in: 282.0s Result Found refineFinal0 11 completed in: 280.1s Result Found refineFinal0 12 completed in: 278.6s Result Found refineFinal0 13 completed in: 278.7s Result Found refineFinal0 14 completed in: 279.1s Result Found refineFinal0 15 completed in: 271.5s Result Found refineFinal0 16 completed in: 280.2s Result Found Completed 16 jobs on 56 threads Clock time: 0h 4.70m CPU time : 1h 14.30m Begin machine parsable segment for: refineFinal0 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx1 279.86096 6109.68 66.34 4:38.14 2220% 2685688 Mon Nov 14 16:54:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx2 282.24052 6236.63 66.03 4:39.55 2254% 2674112 Mon Nov 14 16:54:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx3 280.31580 6092.42 67.68 4:36.80 2225% 2687224 Mon Nov 14 16:54:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx4 277.69098 6056.52 65.03 4:34.02 2233% 2654172 Mon Nov 14 17:03:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx5 277.08811 6091.75 65.13 4:34.96 2239% 2689968 Mon Nov 14 16:53:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx6 278.55106 6060.15 65.52 4:32.92 2244% 2675200 Mon Nov 14 16:34:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx7 271.83436 6072.49 67.57 4:30.08 2273% 2710960 Mon Nov 14 16:57:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx8 280.35708 6174.09 67.86 4:38.28 2242% 2699676 Mon Nov 14 16:54:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx9 279.62308 6070.57 66.09 4:35.50 2227% 2702876 Mon Nov 14 16:54:00 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx10 282.04053 6169.47 66.28 4:39.55 2230% 2716688 Mon Nov 14 16:54:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx11 280.12847 6108.32 64.67 4:36.62 2231% 2680748 Mon Nov 14 16:54:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx12 278.57771 6103.87 70.72 4:34.08 2252% 2698696 Mon Nov 14 17:03:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx13 278.65321 6104.00 66.15 4:34.74 2245% 2705048 Mon Nov 14 16:34:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx14 279.11361 6146.83 71.11 4:37.06 2244% 2677992 Mon Nov 14 16:54:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx15 271.54324 6026.85 64.37 4:29.30 2261% 2693060 Mon Nov 14 16:57:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal0_bnx16 280.15931 6058.95 65.28 4:38.30 2200% 2675532 Mon Nov 14 16:54:03 CST 2022 2022-11-14 22:41:02,781:INFO:************************* Executing stage 31: refineFinal1 ************************* 2022-11-14 22:41:02,781:INFO:Starting stage refineFinal1 2022-11-14 22:41:02,782:INFO:refineFinal1 maxthreads= 56, minthreads= 14 totalThreads= 56 2022-11-14 22:41:02,782:INFO:Generating Jobs for refineFinal1, conf.extensionCount= 5 2022-11-14 22:41:02,783:INFO:inputContigFolder= /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0 inputContigPrefix= exp_refineFinal0 2022-11-14 22:41:02,800:INFO:refineFinal1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -maxthreads 56 -id 1 -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/exp_refineFinal1 -reff /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_group1 -f -stdout -stderr -T 1e-12 -usecolor 1 -A 5 -S 0 -L 80 -maptype 0 -extend 1 -MaxCov 100 -MaxCovWt 0 -contigsplit 0.2 0.029 ID -splitcnt -splitrev 3 -splitsite -MinSplitLen 50.0 -TrimNorm 2 -TrimNormMed 100 -TrimNormMin 2.9 0.0 -CovTrim 3 -CovTrimLen 60 -ChimQuality 2 -ChimQualityFix -TrimNormChim 2 1 -FragileQuality 5.0 10 2 -OutlierQuality 1 -TrimOutlier 0 -MaxSE 0.5 -outlier 3e-3 -outlierLambda 20.0 -outlierType0 0 -endoutlier 1e-2 -skip_dist 0.01 0.01 -endoutlierFinal 1e-2 -RTHETA_FIX 0 -nosplit 2 -EndTrim 3.9 0.2 -EndTrimCQ 1 -biaswt 0.7 -biaswtEnd 0.0 -biaswtRefine 0.7 1 -biaswtOutlier 0.0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 3 -hash -hashdelta 25 10 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -hashGC 300 -hashT2 1 -hashkeys 1 -insertThreads 4 -BestRef 0 -BestRefPV 1 -BestRefWT 1 -AddFragsWT 1 -MultiMatches 0 -refineMinWT 0.02 -deltaX 4 -deltaY 6 -endoutlierRef 1e-3 1e-2 -outlierRef 3e-4 3e-3 -LRbias 1e0 -RefineRange 6 6 -RefineErr 1e-6 1e-6 0 -RefineXRange 2 -RefineAlignExt 1 -RefineFillHmap 0 -LocalRange 1 -LocalTheta 1 -deltaXRef 6 -deltaYRef 6 -deltaExtXRef 8 -deltaExtYRef 8 -outlierLambdaRef 10.0 -outlierTypeRef 1 -outlierLambdaSwitch 1e4 3.0 -outlierTypeSwitch 1 1 -endoutlierSwitch 1e-24 1e-3 -RefineSwitchFade 2 -LRbiasSwitch 1e0 1e0 -refineDefer 1 -HapSiteRes 1.0 -HapSiteResDelay 2.0 11 1 -HapSiteUnphased 12.0 1e-20 -HapMinCov 10 0.25 0.7 50.0 1e-25 0.20 1e-50 1.5 4.0 2 -HapThresh 6 1 6 100.0 1.0 1.0 -HapIndelMerge -HapIndelHiRes 1 2 -HapFilterLast 1 -HapMergeSNPs 1 -HapIndelSkip 50 10 1.0 0.05 -HapMinLL 1.0 0.1 0.1 1.0 1.0 1.0 -HapEndTrim 3.9 2.0 -HapFast 5 -HapLocalStop 3 1 -MPmem 3 10 -SplitHmap 1 -RefineHmap 1 -Mprobeval 0.02 0.01 -RefineStep 0.05 0.02 0.05 0.05 4 0.010 0.005 0.10 -RefineSizeRange 0.5 2.0 0.7 1.4 -skip_score 10.0 100 -SiteMerge 0 -FN_Refine 1.0 1.0 0.0 0.0 -rres 0.9 -mres 0.9 -cres 5.6 2 0.05 -cresMaxLPdrop 4.0 -cresCheckDel 1 -cresRefine -1 -KL 1.3 -KF 1.3 -thetaScale 0.3 -KLRef 1.3 -KFRef 1.3 -thetaScaleRef 0.3 -RefineFillMap 0 -Kmax 3 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -refine 2 -maxmem 32 -maxmemIncrease 1 -maxvirtmem 0 -TotalThreads -boostThreads 10800 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx1/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx2/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx3/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx4/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx5/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx6/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx7/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx8/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx9/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx10/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx11/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx12/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx13/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx14/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx15/_group1.bnx -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal0/exp_refineFinal0_bnx16/_group1.bnx -XmapStatRead /home/bionano/access/local/jobs/10230251/output/molecule_stats.txt 2022-11-14 22:41:02,800:INFO: Starting Multi-Threaded Process: refineFinal1 2022-11-14 22:41:02,801:INFO:conda_env=None,conda_source=None 2022-11-14 22:41:02,801:INFO: Running 82 jobs with 56 threads, sleepTime=0.01 2022-11-14 22:41:04,000:INFO: START 1: refineFinal1 , 56 Thr, 1 R, 82 T, 0 F, 81 Q 2022-11-14 22:41:04,047:INFO: START 2: refineFinal1 , 56 Thr, 2 R, 82 T, 0 F, 80 Q 2022-11-14 22:41:04,083:INFO: START 3: refineFinal1 , 56 Thr, 3 R, 82 T, 0 F, 79 Q 2022-11-14 22:41:04,123:INFO: START 4: refineFinal1 , 56 Thr, 4 R, 82 T, 0 F, 78 Q 2022-11-14 22:41:04,158:INFO: START 5: refineFinal1 , 56 Thr, 5 R, 82 T, 0 F, 77 Q 2022-11-14 22:41:04,191:INFO: START 6: refineFinal1 , 56 Thr, 6 R, 82 T, 0 F, 76 Q 2022-11-14 22:41:04,233:INFO: START 7: refineFinal1 , 56 Thr, 7 R, 82 T, 0 F, 75 Q 2022-11-14 22:41:04,281:INFO: START 8: refineFinal1 , 56 Thr, 8 R, 82 T, 0 F, 74 Q 2022-11-14 22:41:04,322:INFO: START 9: refineFinal1 , 56 Thr, 9 R, 82 T, 0 F, 73 Q 2022-11-14 22:41:04,355:INFO: START 10: refineFinal1 , 56 Thr, 10 R, 82 T, 0 F, 72 Q 2022-11-14 22:41:04,381:INFO: START 11: refineFinal1 , 56 Thr, 11 R, 82 T, 0 F, 71 Q 2022-11-14 22:41:04,425:INFO: START 12: refineFinal1 , 56 Thr, 12 R, 82 T, 0 F, 70 Q 2022-11-14 22:41:04,450:INFO: START 13: refineFinal1 , 56 Thr, 13 R, 82 T, 0 F, 69 Q 2022-11-14 22:41:04,475:INFO: START 14: refineFinal1 , 56 Thr, 14 R, 82 T, 0 F, 68 Q 2022-11-14 22:41:04,513:INFO: START 15: refineFinal1 , 56 Thr, 15 R, 82 T, 0 F, 67 Q 2022-11-14 22:41:04,554:INFO: START 16: refineFinal1 , 56 Thr, 16 R, 82 T, 0 F, 66 Q 2022-11-14 22:41:04,580:INFO: START 17: refineFinal1 , 56 Thr, 17 R, 82 T, 0 F, 65 Q 2022-11-14 22:41:04,606:INFO: START 18: refineFinal1 , 56 Thr, 18 R, 82 T, 0 F, 64 Q 2022-11-14 22:41:04,651:INFO: START 19: refineFinal1 , 56 Thr, 19 R, 82 T, 0 F, 63 Q 2022-11-14 22:41:04,676:INFO: START 20: refineFinal1 , 56 Thr, 20 R, 82 T, 0 F, 62 Q 2022-11-14 22:41:04,702:INFO: START 21: refineFinal1 , 56 Thr, 21 R, 82 T, 0 F, 61 Q 2022-11-14 22:41:04,728:INFO: START 22: refineFinal1 , 56 Thr, 22 R, 82 T, 0 F, 60 Q 2022-11-14 22:41:04,753:INFO: START 23: refineFinal1 , 56 Thr, 23 R, 82 T, 0 F, 59 Q 2022-11-14 22:41:04,795:INFO: START 24: refineFinal1 , 56 Thr, 24 R, 82 T, 0 F, 58 Q 2022-11-14 22:41:04,955:INFO: START 25: refineFinal1 , 56 Thr, 25 R, 82 T, 0 F, 57 Q 2022-11-14 22:41:04,981:INFO: START 26: refineFinal1 , 56 Thr, 26 R, 82 T, 0 F, 56 Q 2022-11-14 22:41:05,042:INFO: START 27: refineFinal1 , 56 Thr, 27 R, 82 T, 0 F, 55 Q 2022-11-14 22:41:05,070:INFO: START 28: refineFinal1 , 56 Thr, 28 R, 82 T, 0 F, 54 Q 2022-11-14 22:41:05,122:INFO: START 29: refineFinal1 , 56 Thr, 29 R, 82 T, 0 F, 53 Q 2022-11-14 22:41:05,204:INFO: START 30: refineFinal1 , 56 Thr, 30 R, 82 T, 0 F, 52 Q 2022-11-14 22:41:05,273:INFO: START 31: refineFinal1 , 56 Thr, 31 R, 82 T, 0 F, 51 Q 2022-11-14 22:41:05,307:INFO: START 32: refineFinal1 , 56 Thr, 32 R, 82 T, 0 F, 50 Q 2022-11-14 22:41:05,333:INFO: START 33: refineFinal1 , 56 Thr, 33 R, 82 T, 0 F, 49 Q 2022-11-14 22:41:05,358:INFO: START 34: refineFinal1 , 56 Thr, 34 R, 82 T, 0 F, 48 Q 2022-11-14 22:41:05,405:INFO: START 35: refineFinal1 , 56 Thr, 35 R, 82 T, 0 F, 47 Q 2022-11-14 22:41:05,431:INFO: START 36: refineFinal1 , 56 Thr, 36 R, 82 T, 0 F, 46 Q 2022-11-14 22:41:05,457:INFO: START 37: refineFinal1 , 56 Thr, 37 R, 82 T, 0 F, 45 Q 2022-11-14 22:41:05,490:INFO: START 38: refineFinal1 , 56 Thr, 38 R, 82 T, 0 F, 44 Q 2022-11-14 22:41:05,524:INFO: START 39: refineFinal1 , 56 Thr, 39 R, 82 T, 0 F, 43 Q 2022-11-14 22:41:05,550:INFO: START 40: refineFinal1 , 56 Thr, 40 R, 82 T, 0 F, 42 Q 2022-11-14 22:41:05,583:INFO: START 41: refineFinal1 , 56 Thr, 41 R, 82 T, 0 F, 41 Q 2022-11-14 22:41:05,617:INFO: START 42: refineFinal1 , 56 Thr, 42 R, 82 T, 0 F, 40 Q 2022-11-14 22:41:05,644:INFO: START 43: refineFinal1 , 56 Thr, 43 R, 82 T, 0 F, 39 Q 2022-11-14 22:41:05,678:INFO: START 44: refineFinal1 , 56 Thr, 44 R, 82 T, 0 F, 38 Q 2022-11-14 22:41:05,703:INFO: START 45: refineFinal1 , 56 Thr, 45 R, 82 T, 0 F, 37 Q 2022-11-14 22:41:05,727:INFO: START 46: refineFinal1 , 56 Thr, 46 R, 82 T, 0 F, 36 Q 2022-11-14 22:41:05,752:INFO: START 47: refineFinal1 , 28 Thr, 47 R, 82 T, 0 F, 35 Q 2022-11-14 22:41:05,781:INFO: START 48: refineFinal1 , 28 Thr, 48 R, 82 T, 0 F, 34 Q 2022-11-14 22:41:05,814:INFO: START 49: refineFinal1 , 28 Thr, 49 R, 82 T, 0 F, 33 Q 2022-11-14 22:41:05,840:INFO: START 50: refineFinal1 , 28 Thr, 50 R, 82 T, 0 F, 32 Q 2022-11-14 22:41:05,873:INFO: START 51: refineFinal1 , 28 Thr, 51 R, 82 T, 0 F, 31 Q 2022-11-14 22:41:05,899:INFO: START 52: refineFinal1 , 28 Thr, 52 R, 82 T, 0 F, 30 Q 2022-11-14 22:41:05,932:INFO: START 53: refineFinal1 , 28 Thr, 53 R, 82 T, 0 F, 29 Q 2022-11-14 22:41:05,957:INFO: START 54: refineFinal1 , 28 Thr, 54 R, 82 T, 0 F, 28 Q 2022-11-14 22:41:05,982:INFO: START 55: refineFinal1 , 28 Thr, 55 R, 82 T, 0 F, 27 Q 2022-11-14 22:41:06,046:INFO: START 56: refineFinal1 , 28 Thr, 56 R, 82 T, 0 F, 26 Q 2022-11-14 22:41:06,071:INFO: START 57: refineFinal1 , 28 Thr, 57 R, 82 T, 0 F, 25 Q 2022-11-14 22:41:06,096:INFO: START 58: refineFinal1 , 28 Thr, 58 R, 82 T, 0 F, 24 Q 2022-11-14 22:41:06,136:INFO: START 59: refineFinal1 , 28 Thr, 59 R, 82 T, 0 F, 23 Q 2022-11-14 22:41:06,169:INFO: START 60: refineFinal1 , 28 Thr, 60 R, 82 T, 0 F, 22 Q 2022-11-14 22:41:06,194:INFO: START 61: refineFinal1 , 28 Thr, 61 R, 82 T, 0 F, 21 Q 2022-11-14 22:41:06,219:INFO: START 62: refineFinal1 , 28 Thr, 62 R, 82 T, 0 F, 20 Q 2022-11-14 22:41:06,243:INFO: START 63: refineFinal1 , 28 Thr, 63 R, 82 T, 0 F, 19 Q 2022-11-14 22:41:06,268:INFO: START 64: refineFinal1 , 28 Thr, 64 R, 82 T, 0 F, 18 Q 2022-11-14 22:41:06,316:INFO: START 65: refineFinal1 , 28 Thr, 65 R, 82 T, 0 F, 17 Q 2022-11-14 22:41:06,349:INFO: START 66: refineFinal1 , 28 Thr, 66 R, 82 T, 0 F, 16 Q 2022-11-14 22:41:06,389:INFO: START 67: refineFinal1 , 28 Thr, 67 R, 82 T, 0 F, 15 Q 2022-11-14 22:41:06,423:INFO: START 68: refineFinal1 , 28 Thr, 68 R, 82 T, 0 F, 14 Q 2022-11-14 22:41:06,454:INFO: START 69: refineFinal1 , 28 Thr, 69 R, 82 T, 0 F, 13 Q 2022-11-14 22:41:06,479:INFO: START 70: refineFinal1 , 28 Thr, 70 R, 82 T, 0 F, 12 Q 2022-11-14 22:41:06,503:INFO: START 71: refineFinal1 , 28 Thr, 71 R, 82 T, 0 F, 11 Q 2022-11-14 22:41:06,528:INFO: START 72: refineFinal1 , 14 Thr, 72 R, 82 T, 0 F, 10 Q 2022-11-14 22:41:06,566:INFO: START 73: refineFinal1 , 14 Thr, 73 R, 82 T, 0 F, 9 Q 2022-11-14 22:41:06,616:INFO: START 74: refineFinal1 , 14 Thr, 74 R, 82 T, 0 F, 8 Q 2022-11-14 22:41:06,651:INFO: START 75: refineFinal1 , 14 Thr, 75 R, 82 T, 0 F, 7 Q 2022-11-14 22:41:06,689:INFO: START 76: refineFinal1 , 14 Thr, 76 R, 82 T, 0 F, 6 Q 2022-11-14 22:41:06,715:INFO: START 77: refineFinal1 , 14 Thr, 77 R, 82 T, 0 F, 5 Q 2022-11-14 22:41:06,749:INFO: START 78: refineFinal1 , 14 Thr, 78 R, 82 T, 0 F, 4 Q 2022-11-14 22:41:06,784:INFO: START 79: refineFinal1 , 14 Thr, 79 R, 82 T, 0 F, 3 Q 2022-11-14 22:41:06,869:INFO: START 80: refineFinal1 , 14 Thr, 80 R, 82 T, 0 F, 2 Q 2022-11-14 22:41:06,901:INFO: START 81: refineFinal1 , 14 Thr, 81 R, 82 T, 0 F, 1 Q 2022-11-14 22:41:06,926:INFO: START 82: refineFinal1 , 14 Thr, 82 R, 82 T, 0 F, 0 Q 2022-11-14 22:41:32,676:INFO: STOP 78: refineFinal1 , 14 Thr, 81 R, 82 T, 1 F, 0 Q TotalTime= 0h 0.43m RunTime= 0h 0.37m CPUload=468% bionano1a 2022-11-14 22:41:38,620:INFO: STOP 79: refineFinal1 , 14 Thr, 80 R, 82 T, 2 F, 0 Q TotalTime= 0h 0.53m RunTime= 0h 0.45m CPUload=590% bionano2a 2022-11-14 22:41:44,486:INFO: STOP 80: refineFinal1 , 14 Thr, 79 R, 82 T, 3 F, 0 Q TotalTime= 0h 0.63m RunTime= 0h 0.16m CPUload=935% bionano1a 2022-11-14 22:41:47,008:INFO: STOP 74: refineFinal1 , 14 Thr, 78 R, 82 T, 4 F, 0 Q TotalTime= 0h 0.67m RunTime= 0h 0.55m CPUload=289% saphyr1d 2022-11-14 22:41:49,422:INFO: STOP 81: refineFinal1 , 14 Thr, 77 R, 82 T, 5 F, 0 Q TotalTime= 0h 0.71m RunTime= 0h 0.14m CPUload=1017% bionano2a 2022-11-14 22:41:52,642:INFO: STOP 82: refineFinal1 , 14 Thr, 76 R, 82 T, 6 F, 0 Q TotalTime= 0h 0.76m RunTime= 0h 0.09m CPUload=992% bionano1a 2022-11-14 22:41:54,238:INFO: STOP 77: refineFinal1 , 14 Thr, 75 R, 82 T, 7 F, 0 Q TotalTime= 0h 0.79m RunTime= 0h 0.73m CPUload=390% bionano1b 2022-11-14 22:42:00,532:INFO: STOP 76: refineFinal1 , 14 Thr, 74 R, 82 T, 8 F, 0 Q TotalTime= 0h 0.90m RunTime= 0h 0.77m CPUload=343% bionano2b 2022-11-14 22:42:00,722:INFO: STOP 56: refineFinal1 , 28 Thr, 73 R, 82 T, 9 F, 0 Q TotalTime= 0h 0.91m RunTime= 0h 0.85m CPUload=387% saphyr1a 2022-11-14 22:42:03,614:INFO: STOP 73: refineFinal1 , 14 Thr, 72 R, 82 T, 10 F, 0 Q TotalTime= 0h 0.95m RunTime= 0h 0.79m CPUload=303% bionano2c 2022-11-14 22:42:05,230:INFO: STOP 62: refineFinal1 , 28 Thr, 71 R, 82 T, 11 F, 0 Q TotalTime= 0h 0.98m RunTime= 0h 0.95m CPUload=359% saphyr1a 2022-11-14 22:42:06,608:INFO: STOP 75: refineFinal1 , 14 Thr, 70 R, 82 T, 12 F, 0 Q TotalTime= 0h 1.00m RunTime= 0h 0.85m CPUload=362% saphyr1b 2022-11-14 22:42:06,693:INFO: STOP 64: refineFinal1 , 28 Thr, 69 R, 82 T, 13 F, 0 Q TotalTime= 0h 1.01m RunTime= 0h 0.95m CPUload=350% saphyr1a 2022-11-14 22:42:06,800:INFO: STOP 51: refineFinal1 , 28 Thr, 68 R, 82 T, 14 F, 0 Q TotalTime= 0h 1.02m RunTime= 0h 0.84m CPUload=301% saphyr1c 2022-11-14 22:42:07,389:INFO: STOP 66: refineFinal1 , 28 Thr, 67 R, 82 T, 15 F, 0 Q TotalTime= 0h 1.02m RunTime= 0h 0.97m CPUload=305% saphyr1a 2022-11-14 22:42:08,113:INFO: STOP 61: refineFinal1 , 28 Thr, 66 R, 82 T, 16 F, 0 Q TotalTime= 0h 1.03m RunTime= 0h 0.99m CPUload=329% saphyr1a 2022-11-14 22:42:09,680:INFO: STOP 69: refineFinal1 , 28 Thr, 65 R, 82 T, 17 F, 0 Q TotalTime= 0h 1.05m RunTime= 0h 1.00m CPUload=268% saphyr1a 2022-11-14 22:42:11,042:INFO: STOP 68: refineFinal1 , 28 Thr, 64 R, 82 T, 18 F, 0 Q TotalTime= 0h 1.08m RunTime= 0h 1.01m CPUload=290% saphyr1a 2022-11-14 22:42:11,148:INFO: STOP 52: refineFinal1 , 28 Thr, 63 R, 82 T, 19 F, 0 Q TotalTime= 0h 1.09m RunTime= 0h 0.92m CPUload=142% bionano1c 2022-11-14 22:42:11,704:INFO: STOP 67: refineFinal1 , 28 Thr, 62 R, 82 T, 20 F, 0 Q TotalTime= 0h 1.09m RunTime= 0h 1.05m CPUload=415% saphyr1a 2022-11-14 22:42:11,705:INFO: STOP 65: refineFinal1 , 28 Thr, 61 R, 82 T, 21 F, 0 Q TotalTime= 0h 1.09m RunTime= 0h 1.04m CPUload=345% saphyr1a 2022-11-14 22:42:11,706:INFO: STOP 63: refineFinal1 , 28 Thr, 60 R, 82 T, 22 F, 0 Q TotalTime= 0h 1.09m RunTime= 0h 1.04m CPUload=403% saphyr1a 2022-11-14 22:42:12,973:INFO: STOP 59: refineFinal1 , 28 Thr, 59 R, 82 T, 23 F, 0 Q TotalTime= 0h 1.11m RunTime= 0h 1.05m CPUload=400% saphyr1a 2022-11-14 22:42:13,582:INFO: STOP 60: refineFinal1 , 28 Thr, 58 R, 82 T, 24 F, 0 Q TotalTime= 0h 1.12m RunTime= 0h 1.08m CPUload=453% saphyr1a 2022-11-14 22:42:14,799:INFO: STOP 58: refineFinal1 , 28 Thr, 57 R, 82 T, 25 F, 0 Q TotalTime= 0h 1.15m RunTime= 0h 1.09m CPUload=466% saphyr1a 2022-11-14 22:42:14,800:INFO: STOP 57: refineFinal1 , 28 Thr, 56 R, 82 T, 26 F, 0 Q TotalTime= 0h 1.15m RunTime= 0h 1.09m CPUload=510% saphyr1a 2022-11-14 22:42:17,761:INFO: STOP 71: refineFinal1 , 28 Thr, 55 R, 82 T, 27 F, 0 Q TotalTime= 0h 1.19m RunTime= 0h 0.16m CPUload=1447% saphyr1a 2022-11-14 22:42:18,963:INFO: STOP 70: refineFinal1 , 28 Thr, 54 R, 82 T, 28 F, 0 Q TotalTime= 0h 1.21m RunTime= 0h 0.25m CPUload=1214% saphyr1a 2022-11-14 22:42:19,552:INFO: STOP 55: refineFinal1 , 28 Thr, 53 R, 82 T, 29 F, 0 Q TotalTime= 0h 1.23m RunTime= 0h 1.17m CPUload=410% bionano2d 2022-11-14 22:42:24,226:INFO: STOP 54: refineFinal1 , 28 Thr, 52 R, 82 T, 30 F, 0 Q TotalTime= 0h 1.30m RunTime= 0h 1.15m CPUload=334% saphyr1c 2022-11-14 22:42:25,953:INFO: STOP 53: refineFinal1 , 28 Thr, 51 R, 82 T, 31 F, 0 Q TotalTime= 0h 1.33m RunTime= 0h 1.29m CPUload=498% bionano2d 2022-11-14 22:42:26,508:INFO: STOP 72: refineFinal1 , 14 Thr, 50 R, 82 T, 32 F, 0 Q TotalTime= 0h 1.33m RunTime= 0h 1.18m CPUload=200% bionano1d 2022-11-14 22:42:27,186:INFO: STOP 50: refineFinal1 , 28 Thr, 49 R, 82 T, 33 F, 0 Q TotalTime= 0h 1.36m RunTime= 0h 1.30m CPUload=510% bionano2d 2022-11-14 22:42:35,294:INFO: STOP 49: refineFinal1 , 28 Thr, 48 R, 82 T, 34 F, 0 Q TotalTime= 0h 1.49m RunTime= 0h 1.33m CPUload=544% bionano1c 2022-11-14 22:42:35,296:INFO: STOP 48: refineFinal1 , 28 Thr, 47 R, 82 T, 35 F, 0 Q TotalTime= 0h 1.49m RunTime= 0h 1.33m CPUload=583% saphyr1c 2022-11-14 22:42:43,031:INFO: STOP 47: refineFinal1 , 28 Thr, 46 R, 82 T, 36 F, 0 Q TotalTime= 0h 1.62m RunTime= 0h 1.45m CPUload=541% bionano1c 2022-11-14 22:42:53,160:INFO: STOP 44: refineFinal1 , 56 Thr, 45 R, 82 T, 37 F, 0 Q TotalTime= 0h 1.79m RunTime= 0h 1.62m CPUload=505% saphyr1b 2022-11-14 22:43:05,045:INFO: STOP 42: refineFinal1 , 56 Thr, 44 R, 82 T, 38 F, 0 Q TotalTime= 0h 1.99m RunTime= 0h 1.86m CPUload=434% saphyr1d 2022-11-14 22:43:09,408:INFO: STOP 41: refineFinal1 , 56 Thr, 43 R, 82 T, 39 F, 0 Q TotalTime= 0h 2.06m RunTime= 0h 1.90m CPUload=597% saphyr1c 2022-11-14 22:43:14,135:INFO: STOP 43: refineFinal1 , 56 Thr, 42 R, 82 T, 40 F, 0 Q TotalTime= 0h 2.14m RunTime= 0h 2.10m CPUload=482% bionano2d 2022-11-14 22:43:35,363:INFO: STOP 46: refineFinal1 , 56 Thr, 41 R, 82 T, 41 F, 0 Q TotalTime= 0h 2.49m RunTime= 0h 2.42m CPUload=445% bionano1b 2022-11-14 22:43:46,611:INFO: STOP 45: refineFinal1 , 56 Thr, 40 R, 82 T, 42 F, 0 Q TotalTime= 0h 2.68m RunTime= 0h 2.55m CPUload=387% bionano2b 2022-11-14 22:43:57,215:INFO: STOP 35: refineFinal1 , 56 Thr, 39 R, 82 T, 43 F, 0 Q TotalTime= 0h 2.86m RunTime= 0h 2.82m CPUload=649% bionano2d 2022-11-14 22:43:58,020:INFO: STOP 40: refineFinal1 , 56 Thr, 38 R, 82 T, 44 F, 0 Q TotalTime= 0h 2.87m RunTime= 0h 2.70m CPUload=511% bionano2c 2022-11-14 22:44:07,267:INFO: STOP 38: refineFinal1 , 56 Thr, 37 R, 82 T, 45 F, 0 Q TotalTime= 0h 3.03m RunTime= 0h 2.96m CPUload=479% bionano1b 2022-11-14 22:44:32,452:INFO: STOP 36: refineFinal1 , 56 Thr, 36 R, 82 T, 46 F, 0 Q TotalTime= 0h 3.45m RunTime= 0h 3.27m CPUload=562% saphyr1b 2022-11-14 22:44:32,841:INFO: STOP 37: refineFinal1 , 56 Thr, 35 R, 82 T, 47 F, 0 Q TotalTime= 0h 3.46m RunTime= 0h 3.32m CPUload=517% bionano2b 2022-11-14 22:44:42,611:INFO: STOP 33: refineFinal1 , 56 Thr, 34 R, 82 T, 48 F, 0 Q TotalTime= 0h 3.62m RunTime= 0h 3.46m CPUload=668% saphyr1c 2022-11-14 22:44:44,093:INFO: STOP 39: refineFinal1 , 56 Thr, 33 R, 82 T, 49 F, 0 Q TotalTime= 0h 3.64m RunTime= 0h 3.49m CPUload=368% bionano1c 2022-11-14 22:45:00,796:INFO: STOP 34: refineFinal1 , 56 Thr, 32 R, 82 T, 50 F, 0 Q TotalTime= 0h 3.92m RunTime= 0h 3.77m CPUload=582% saphyr1d 2022-11-14 22:45:06,169:INFO: STOP 27: refineFinal1 , 56 Thr, 31 R, 82 T, 51 F, 0 Q TotalTime= 0h 4.02m RunTime= 0h 3.97m CPUload=1026% bionano2d 2022-11-14 22:45:07,157:INFO: STOP 31: refineFinal1 , 56 Thr, 30 R, 82 T, 52 F, 0 Q TotalTime= 0h 4.03m RunTime= 0h 3.87m CPUload=577% bionano1c 2022-11-14 22:45:18,094:INFO: STOP 32: refineFinal1 , 56 Thr, 29 R, 82 T, 53 F, 0 Q TotalTime= 0h 4.21m RunTime= 0h 4.04m CPUload=485% bionano2c 2022-11-14 22:45:28,716:INFO: STOP 25: refineFinal1 , 56 Thr, 28 R, 82 T, 54 F, 0 Q TotalTime= 0h 4.40m RunTime= 0h 4.36m CPUload=1127% saphyr1c 2022-11-14 22:46:07,413:INFO: STOP 19: refineFinal1 , 56 Thr, 27 R, 82 T, 55 F, 0 Q TotalTime= 0h 5.05m RunTime= 0h 5.00m CPUload=2592% bionano2d 2022-11-14 22:46:11,788:INFO: STOP 30: refineFinal1 , 56 Thr, 26 R, 82 T, 56 F, 0 Q TotalTime= 0h 5.11m RunTime= 0h 5.04m CPUload=686% bionano1b 2022-11-14 22:46:26,121:INFO: STOP 29: refineFinal1 , 56 Thr, 25 R, 82 T, 57 F, 0 Q TotalTime= 0h 5.35m RunTime= 0h 5.21m CPUload=781% bionano2b 2022-11-14 22:46:26,399:INFO: STOP 28: refineFinal1 , 56 Thr, 24 R, 82 T, 58 F, 0 Q TotalTime= 0h 5.36m RunTime= 0h 5.18m CPUload=772% saphyr1b 2022-11-14 22:47:31,036:INFO: STOP 17: refineFinal1 , 56 Thr, 23 R, 82 T, 59 F, 0 Q TotalTime= 0h 6.44m RunTime= 0h 6.39m CPUload=2666% saphyr1c 2022-11-14 22:48:06,760:INFO: STOP 23: refineFinal1 , 56 Thr, 22 R, 82 T, 60 F, 0 Q TotalTime= 0h 7.03m RunTime= 0h 6.95m CPUload=1573% bionano1c 2022-11-14 22:48:29,353:INFO: STOP 26: refineFinal1 , 56 Thr, 21 R, 82 T, 61 F, 0 Q TotalTime= 0h 7.41m RunTime= 0h 7.36m CPUload=848% saphyr1d 2022-11-14 22:48:29,655:INFO: STOP 15: refineFinal1 , 56 Thr, 20 R, 82 T, 62 F, 0 Q TotalTime= 0h 7.42m RunTime= 0h 7.34m CPUload=2111% bionano1c 2022-11-14 22:48:45,048:INFO: STOP 2: refineFinal1 , 56 Thr, 19 R, 82 T, 63 F, 0 Q TotalTime= 0h 7.68m RunTime= 0h 7.65m CPUload=2282% bionano2a 2022-11-14 22:48:49,020:INFO: STOP 4: refineFinal1 , 56 Thr, 18 R, 82 T, 64 F, 0 Q TotalTime= 0h 7.75m RunTime= 0h 7.71m CPUload=2507% bionano2a 2022-11-14 22:48:53,201:INFO: STOP 3: refineFinal1 , 56 Thr, 17 R, 82 T, 65 F, 0 Q TotalTime= 0h 7.82m RunTime= 0h 7.79m CPUload=2377% bionano1a 2022-11-14 22:49:03,006:INFO: STOP 22: refineFinal1 , 56 Thr, 16 R, 82 T, 66 F, 0 Q TotalTime= 0h 7.97m RunTime= 0h 7.94m CPUload=1603% bionano1b 2022-11-14 22:49:14,140:INFO: STOP 1: refineFinal1 , 56 Thr, 15 R, 82 T, 67 F, 0 Q TotalTime= 0h 8.17m RunTime= 0h 8.15m CPUload=2622% bionano1a 2022-11-14 22:49:16,479:INFO: STOP 21: refineFinal1 , 56 Thr, 14 R, 82 T, 68 F, 0 Q TotalTime= 0h 8.20m RunTime= 0h 8.14m CPUload=1597% bionano2b 2022-11-14 22:49:24,107:INFO: STOP 14: refineFinal1 , 56 Thr, 13 R, 82 T, 69 F, 0 Q TotalTime= 0h 8.33m RunTime= 0h 8.29m CPUload=2131% bionano1b 2022-11-14 22:49:30,443:INFO: STOP 13: refineFinal1 , 56 Thr, 12 R, 82 T, 70 F, 0 Q TotalTime= 0h 8.43m RunTime= 0h 8.39m CPUload=1940% bionano2b 2022-11-14 22:50:06,063:INFO: STOP 20: refineFinal1 , 56 Thr, 11 R, 82 T, 71 F, 0 Q TotalTime= 0h 9.02m RunTime= 0h 8.95m CPUload=1708% saphyr1b 2022-11-14 22:50:08,850:INFO: STOP 24: refineFinal1 , 56 Thr, 10 R, 82 T, 72 F, 0 Q TotalTime= 0h 9.07m RunTime= 0h 8.97m CPUload=993% bionano2c 2022-11-14 22:50:23,036:INFO: STOP 12: refineFinal1 , 56 Thr, 9 R, 82 T, 73 F, 0 Q TotalTime= 0h 9.31m RunTime= 0h 9.23m CPUload=1864% saphyr1b 2022-11-14 22:50:43,525:INFO: STOP 18: refineFinal1 , 56 Thr, 8 R, 82 T, 74 F, 0 Q TotalTime= 0h 9.65m RunTime= 0h 9.61m CPUload=1579% saphyr1d 2022-11-14 22:50:45,920:INFO: STOP 16: refineFinal1 , 56 Thr, 7 R, 82 T, 75 F, 0 Q TotalTime= 0h 9.69m RunTime= 0h 9.60m CPUload=1336% bionano2c 2022-11-14 22:51:03,626:INFO: STOP 11: refineFinal1 , 56 Thr, 6 R, 82 T, 76 F, 0 Q TotalTime= 0h 9.99m RunTime= 0h 9.94m CPUload=1867% saphyr1d 2022-11-14 22:51:04,028:INFO: STOP 10: refineFinal1 , 56 Thr, 5 R, 82 T, 77 F, 0 Q TotalTime= 0h 9.99m RunTime= 0h 9.91m CPUload=1838% bionano2c 2022-11-14 23:02:38,248:INFO: STOP 9: refineFinal1 , 56 Thr, 4 R, 82 T, 78 F, 0 Q TotalTime= 0h 21.57m RunTime= 0h 21.47m CPUload=831% bionano1d 2022-11-14 23:03:02,371:INFO: STOP 7: refineFinal1 , 56 Thr, 3 R, 82 T, 79 F, 0 Q TotalTime= 0h 21.97m RunTime= 0h 21.90m CPUload=900% bionano1d 2022-11-14 23:03:27,497:INFO: STOP 8: refineFinal1 , 56 Thr, 2 R, 82 T, 80 F, 0 Q TotalTime= 0h 22.39m RunTime= 0h 22.31m CPUload=844% bionano1d 2022-11-14 23:03:40,561:INFO: STOP 6: refineFinal1 , 56 Thr, 1 R, 82 T, 81 F, 0 Q TotalTime= 0h 22.61m RunTime= 0h 22.55m CPUload=1009% bionano1d 2022-11-14 23:03:45,600:INFO: STOP 5: refineFinal1 , 56 Thr, 0 R, 82 T, 82 F, 0 Q TotalTime= 0h 22.69m RunTime= 0h 22.64m CPUload=1007% bionano1d 2022-11-14 23:03:45,600:INFO: Finished Multi-Threaded Process: refineFinal1 2022-11-14 23:03:45,659:INFO: refineFinal1 1 completed in: 490.1s Result Found refineFinal1 2 completed in: 461.0s Result Found refineFinal1 3 completed in: 469.1s Result Found refineFinal1 4 completed in: 464.9s Result Found refineFinal1 5 completed in: 1361.4s Result Found refineFinal1 6 completed in: 1356.4s Result Found refineFinal1 7 completed in: 1318.1s Result Found refineFinal1 8 completed in: 1343.2s Result Found refineFinal1 9 completed in: 1293.9s Result Found refineFinal1 10 completed in: 599.7s Result Found refineFinal1 11 completed in: 599.2s Result Found refineFinal1 12 completed in: 558.6s Result Found refineFinal1 13 completed in: 506.0s Result Found refineFinal1 14 completed in: 499.6s Result Found refineFinal1 15 completed in: 445.1s Result Found refineFinal1 16 completed in: 581.4s Result Found refineFinal1 17 completed in: 386.5s Result Found refineFinal1 18 completed in: 578.9s Result Found refineFinal1 19 completed in: 302.8s Result Found refineFinal1 20 completed in: 541.4s Result Found refineFinal1 21 completed in: 491.8s Result Found refineFinal1 22 completed in: 478.3s Result Found refineFinal1 23 completed in: 422.0s Result Found refineFinal1 24 completed in: 544.1s Result Found refineFinal1 25 completed in: 263.8s Result Found refineFinal1 26 completed in: 444.4s Result Found refineFinal1 27 completed in: 241.1s Result Found refineFinal1 28 completed in: 321.3s Result Found refineFinal1 29 completed in: 321.0s Result Found refineFinal1 30 completed in: 306.6s Result Found refineFinal1 31 completed in: 241.9s Result Found refineFinal1 32 completed in: 252.8s Result Found refineFinal1 33 completed in: 217.3s Result Found refineFinal1 34 completed in: 235.4s Result Found refineFinal1 35 completed in: 171.8s Result Found refineFinal1 36 completed in: 207.0s Result Found refineFinal1 37 completed in: 207.4s Result Found refineFinal1 38 completed in: 181.8s Result Found refineFinal1 39 completed in: 218.6s Result Found refineFinal1 40 completed in: 172.5s Result Found refineFinal1 41 completed in: 123.8s Result Found refineFinal1 42 completed in: 119.4s Result Found refineFinal1 43 completed in: 128.5s Result Found refineFinal1 44 completed in: 107.5s Result Found refineFinal1 45 completed in: 160.9s Result Found refineFinal1 46 completed in: 149.6s Result Found refineFinal1 47 completed in: 97.3s Result Found refineFinal1 48 completed in: 89.5s Result Found refineFinal1 49 completed in: 89.5s Result Found refineFinal1 50 completed in: 81.3s Result Found refineFinal1 51 completed in: 60.9s Result Found refineFinal1 52 completed in: 65.2s Result Found refineFinal1 53 completed in: 80.0s Result Found refineFinal1 54 completed in: 78.3s Result Found refineFinal1 55 completed in: 73.6s Result Found refineFinal1 56 completed in: 54.7s Result Found refineFinal1 57 completed in: 68.7s Result Found refineFinal1 58 completed in: 68.7s Result Found refineFinal1 59 completed in: 66.8s Result Found refineFinal1 60 completed in: 67.4s Result Found refineFinal1 61 completed in: 61.9s Result Found refineFinal1 62 completed in: 59.0s Result Found refineFinal1 63 completed in: 65.5s Result Found refineFinal1 64 completed in: 60.4s Result Found refineFinal1 65 completed in: 65.4s Result Found refineFinal1 66 completed in: 61.0s Result Found refineFinal1 67 completed in: 65.3s Result Found refineFinal1 68 completed in: 64.6s Result Found refineFinal1 69 completed in: 63.2s Result Found refineFinal1 70 completed in: 72.5s Result Found refineFinal1 71 completed in: 71.3s Result Found refineFinal1 72 completed in: 80.0s Result Found refineFinal1 73 completed in: 57.0s Result Found refineFinal1 74 completed in: 40.4s Result Found refineFinal1 75 completed in: 60.0s Result Found refineFinal1 76 completed in: 53.8s Result Found refineFinal1 77 completed in: 47.5s Result Found refineFinal1 78 completed in: 25.9s Result Found refineFinal1 79 completed in: 31.8s Result Found refineFinal1 80 completed in: 37.6s Result Found refineFinal1 81 completed in: 42.5s Result Found refineFinal1 82 completed in: 45.7s Result Found Completed 82 jobs on 56 threads Clock time: 0h 22.71m CPU time : 6h 26.04m Begin machine parsable segment for: refineFinal1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_exp_refineFinal1_contig1.cmap 490.14044 12474.50 353.90 8:09.23 2622% 1277696 Mon Nov 14 17:02:17 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig2.cmap 461.00079 10136.40 336.29 7:38.76 2282% 2304120 Mon Nov 14 17:01:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig6.cmap 469.11787 10873.56 233.41 7:47.17 2377% 1090052 Mon Nov 14 17:01:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig4.cmap 464.89592 11268.87 335.95 7:42.87 2507% 1304272 Mon Nov 14 17:01:51 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig8.cmap 1361.44185 13450.50 226.19 22:37.76 1007% 1114980 Mon Nov 14 17:16:47 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig9.cmap 1356.36942 13430.91 223.23 22:32.56 1009% 1056564 Mon Nov 14 17:16:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig7.cmap 1318.13786 11655.19 170.49 21:53.37 900% 1505196 Mon Nov 14 17:16:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig3.cmap 1343.21559 11103.44 194.28 22:17.71 844% 2085344 Mon Nov 14 17:16:29 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig15.cmap 1293.92519 10558.09 144.92 21:27.65 831% 979208 Mon Nov 14 17:15:40 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig13.cmap 599.67279 10732.52 198.58 9:54.63 1838% 1003616 Mon Nov 14 17:04:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig5.cmap 599.24504 10905.05 232.84 9:56.28 1867% 1746612 Mon Nov 14 17:13:42 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig11.cmap 558.61036 10078.85 240.29 9:13.54 1864% 1639348 Mon Nov 14 16:43:57 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig16.cmap 505.99255 9575.02 191.20 8:23.30 1940% 929684 Mon Nov 14 17:02:32 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig17.cmap 499.63221 10384.02 209.58 8:17.02 2131% 1393000 Mon Nov 14 17:02:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig12.cmap 445.14243 9115.62 179.79 7:20.19 2111% 993288 Mon Nov 14 17:01:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig14.cmap 581.36610 7557.90 139.70 9:35.89 1336% 1608808 Mon Nov 14 17:03:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig10.cmap 386.45535 9994.01 223.08 6:23.13 2666% 1061208 Mon Nov 14 17:03:56 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig18.cmap 578.91870 8919.64 183.57 9:36.37 1579% 1305448 Mon Nov 14 17:13:22 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig20.cmap 302.76144 7574.30 204.78 5:00.10 2592% 1471744 Mon Nov 14 16:59:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig19.cmap 541.38647 8969.85 198.29 8:56.53 1708% 1168520 Mon Nov 14 16:43:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig21.cmap 491.77649 7649.81 154.01 8:08.52 1597% 815420 Mon Nov 14 17:02:18 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig22.cmap 478.27771 7508.50 130.66 7:56.33 1603% 764804 Mon Nov 14 17:02:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig23.cmap 422.00632 6429.25 125.45 6:56.46 1573% 688992 Mon Nov 14 17:01:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig25.cmap 544.05513 5248.04 94.43 8:57.92 993% 786760 Mon Nov 14 17:03:11 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig24.cmap 263.76061 2881.73 67.34 4:21.51 1127% 729524 Mon Nov 14 17:01:54 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig28.cmap 444.37245 3675.73 67.19 7:21.03 848% 492272 Mon Nov 14 17:11:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig26.cmap 241.12620 2399.37 45.55 3:58.09 1026% 545576 Mon Nov 14 16:58:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig31.cmap 321.32937 2349.54 51.42 5:10.89 772% 362856 Mon Nov 14 16:40:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig27.cmap 320.99843 2392.88 49.19 5:12.55 781% 508584 Mon Nov 14 16:59:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig30.cmap 306.58394 2042.41 32.60 5:02.14 686% 470128 Mon Nov 14 16:59:13 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig33.cmap 241.88382 1311.62 28.88 3:52.18 577% 285996 Mon Nov 14 16:58:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig37.cmap 252.78713 1147.78 28.33 4:02.33 485% 291580 Mon Nov 14 16:58:19 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig29.cmap 217.27779 1359.35 25.67 3:27.32 668% 303904 Mon Nov 14 17:01:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig34.cmap 235.43724 1290.05 25.59 3:45.92 582% 281064 Mon Nov 14 17:07:37 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig41.cmap 171.80967 1072.00 25.67 2:48.87 649% 269200 Mon Nov 14 16:56:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig40.cmap 207.02106 1076.91 27.27 3:16.30 562% 269528 Mon Nov 14 16:38:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig39.cmap 207.38460 1007.20 22.05 3:18.90 517% 256136 Mon Nov 14 16:57:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig32.cmap 181.77681 838.14 12.85 2:57.35 479% 260744 Mon Nov 14 16:57:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig35.cmap 218.56811 753.26 16.57 3:28.74 368% 235352 Mon Nov 14 16:57:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig38.cmap 172.47045 809.29 18.47 2:41.93 511% 246136 Mon Nov 14 16:56:59 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig36.cmap 123.82507 662.52 18.94 1:54.03 597% 230184 Mon Nov 14 16:59:35 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig43.cmap 119.42792 466.74 17.14 1:51.27 434% 220852 Mon Nov 14 17:05:43 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig47.cmap 128.49102 590.69 15.67 2:05.67 482% 227532 Mon Nov 14 16:56:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig56.cmap 107.48165 472.00 19.47 1:37.21 505% 222280 Mon Nov 14 16:36:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig42.cmap 160.90821 576.22 14.75 2:32.32 387% 217352 Mon Nov 14 16:56:48 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig50.cmap 149.63560 632.66 13.22 2:25.00 445% 224728 Mon Nov 14 16:56:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig44.cmap 97.27857 462.28 7.20 1:26.64 541% 182924 Mon Nov 14 16:55:44 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig60.cmap 89.51510 460.14 6.56 1:19.99 583% 181596 Mon Nov 14 16:59:01 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig45.cmap 89.47968 424.99 7.79 1:19.45 544% 181856 Mon Nov 14 16:55:36 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig46.cmap 81.34542 391.39 5.50 1:17.68 510% 183696 Mon Nov 14 16:55:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig82.cmap 60.92619 148.07 3.79 0:50.37 301% 149644 Mon Nov 14 16:58:31 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig62.cmap 65.24915 74.48 3.77 0:54.81 142% 157816 Mon Nov 14 16:55:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig48.cmap 80.02007 378.68 5.70 1:17.09 498% 180596 Mon Nov 14 16:55:27 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig76.cmap 78.26826 224.13 5.88 1:08.68 334% 159400 Mon Nov 14 16:58:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig51.cmap 73.56958 283.56 4.59 1:10.16 410% 211560 Mon Nov 14 16:55:21 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig80.cmap 54.67643 194.42 3.66 0:51.14 387% 167540 Mon Nov 14 16:41:58 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig52.cmap 68.72869 326.78 6.21 1:05.16 510% 178632 Mon Nov 14 16:42:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig49.cmap 68.70317 297.78 7.73 1:05.52 466% 202056 Mon Nov 14 16:42:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig54.cmap 66.83673 247.57 5.41 1:03.10 400% 178980 Mon Nov 14 16:42:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig67.cmap 67.41229 286.30 7.30 1:04.69 453% 183216 Mon Nov 14 16:42:12 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig70.cmap 61.91936 190.21 4.80 0:59.18 329% 170388 Mon Nov 14 16:42:06 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig72.cmap 59.01081 198.97 4.60 0:56.56 359% 170868 Mon Nov 14 16:42:03 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig59.cmap 65.46277 246.71 4.42 1:02.17 403% 164240 Mon Nov 14 16:42:09 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig78.cmap 60.42521 195.35 5.06 0:57.22 350% 161772 Mon Nov 14 16:42:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig58.cmap 65.38883 211.26 4.99 1:02.59 345% 161376 Mon Nov 14 16:42:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig75.cmap 61.04037 172.71 5.14 0:58.14 305% 168632 Mon Nov 14 16:42:05 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig64.cmap 65.31424 256.31 4.76 1:02.82 415% 162112 Mon Nov 14 16:42:10 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig57.cmap 64.61927 171.46 4.60 1:00.58 290% 156000 Mon Nov 14 16:42:08 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig63.cmap 63.22535 157.19 3.97 1:00.07 268% 161092 Mon Nov 14 16:42:07 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig65.cmap 72.48433 176.83 6.97 0:15.14 1214% 210776 Mon Nov 14 16:42:16 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig81.cmap 71.25719 132.95 5.00 0:09.53 1447% 195040 Mon Nov 14 16:42:15 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig66.cmap 79.98004 140.23 1.90 1:10.84 200% 157920 Mon Nov 14 16:55:28 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig55.cmap 57.04780 142.01 1.86 0:47.33 303% 150704 Mon Nov 14 16:55:04 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig79.cmap 40.39168 93.67 1.54 0:32.90 289% 142608 Mon Nov 14 17:04:25 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig69.cmap 59.95682 181.78 2.09 0:50.71 362% 157036 Mon Nov 14 16:35:41 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig74.cmap 53.84244 156.59 2.35 0:46.22 343% 143764 Mon Nov 14 16:55:02 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig61.cmap 47.52270 169.36 1.32 0:43.67 390% 162456 Mon Nov 14 16:54:55 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig71.cmap 25.92679 102.13 1.19 0:22.06 468% 148816 Mon Nov 14 16:54:34 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig68.cmap 31.83646 156.91 2.22 0:26.92 590% 203808 Mon Nov 14 16:54:39 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig53.cmap 37.61696 88.50 0.90 0:09.55 935% 167096 Mon Nov 14 16:54:46 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig73.cmap 42.52128 80.93 1.52 0:08.10 1017% 142684 Mon Nov 14 16:54:50 CST 2022 time_line jobs+10230251+startPipeline_exp_refineFinal1_contig77.cmap 45.71612 54.60 1.02 0:05.60 992% 136112 Mon Nov 14 16:54:54 CST 2022 2022-11-14 23:03:45,659:INFO:Listing the contents of /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1 2022-11-14 23:03:45,660:INFO:Loaded 584 file names from /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1 2022-11-14 23:03:45,661:INFO:Found 85 CMAP files in /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1 2022-11-14 23:03:45,662:INFO:Writing list of contigs to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 23:03:45,662:INFO:Wrote list to /home/bionano/access/local/jobs/10230251/output/contigs/curContigs 2022-11-14 23:03:45,663:INFO: Starting Multi-Threaded Process: Cmap_Merge_exp_refineFinal1 2022-11-14 23:03:45,663:INFO:conda_env=None,conda_source=None 2022-11-14 23:03:45,663:INFO: Running 1 jobs with 1 threads, sleepTime=0.01 2022-11-14 23:03:45,681:INFO: START 1: mrg_exp_refineF, 16 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 23:03:49,081:INFO: STOP 1: mrg_exp_refineF, 16 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.06m RunTime= 0h 0.03m CPUload=112% saphyr1c 2022-11-14 23:03:49,081:INFO: Finished Multi-Threaded Process: Cmap_Merge_exp_refineFinal1 2022-11-14 23:03:49,082:INFO: mrg_exp_refineFinal1_0 completed in: 3.4s Result Found Completed 1 jobs on 1 threads Clock time: 0h 0.06m CPU time : 0h 0.06m Begin machine parsable segment for: Cmap_Merge_exp_refineFinal1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_mrg_exp_refineFinal1_0 3.39965 1.51 0.35 0:01.64 112% 159480 Mon Nov 14 17:20:15 CST 2022 2022-11-14 23:03:50,239:INFO:Generating jobs for CharacterizeF_refineFinal1 2022-11-14 23:03:50,239:INFO:CharacterizeF_refineFinal1 ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/EXP_REFINEFINAL1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/alignref_final/EXP_REFINEFINAL1 -stdout -stderr -maxthreads 112 -output-veto-filter '(intervals.txt|\.map)$' -M 1 3 -Msave 1 -T 1e-12 -A 13 -S 0.1 -L 60.0 -outlier 3e-4 -endoutlier 3e-2 -outlierBC -KL 1.5 -KF 1.5 -thetaScale 0.5 -res 2.6 -resSD 0.7 -extend 1 -nosplit 2 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -deltaX 6 -deltaY 6 -PVres 2 -PVendoutlier -hashgen 5 11 2.4 1.4 0.05 3.0 1 1 1 -hash -hashdelta 27 -hashoffset 1 -hashrange 0 -MultiMatchesTotScore 2 12.0 -RefSplit 1e-4 14 1e-3 -RefSplitStitch 1 -mres 1e-3 -hashGrouped 6 11 -hashMultiMatch 50 2 -hashGC 300 -hashT2 1 -hashkeys 1 -HSDrange 1.0 -insertThreads 4 -ScaleDelta 0.02 1 -ScaleDeltaBPP -hashScaleDelta 2 -xmapchim 14 2000.0 -xmapUnique 14 -xmaplen -AlignRes 2.0 -outlierExtend 6 120 -Kmax 4 -rres 0.9 -resEstimate -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -outlierLambda 10.0 -outlierType1 0 -FP 0.2 -FN 0.02 -sf 0.1 -sd 0.0 -sr 0.02 -se 0.2 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -indel -finalsort-sitesdec -RAmem 3 1 0.8 -f -maxmem 120 -maxmemIncrease 8 -maxvirtmem 0 -ScaleDelta 0.03 8 -ScaleDeltaBPP -hashScaleDelta 2 2022-11-14 23:03:50,241:INFO:Running jobs for CharacterizeF_refineFinal1 2022-11-14 23:03:50,242:INFO:Generating jobs for alignmol 2022-11-14 23:03:50,243:INFO:alignmol ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/EXP_REFINEFINAL1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/alignmol/merge/exp_refineFinal1 -i /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx -f -stdout -stderr -maxthreads 112 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -output-veto-filter '(intervals.txt|\.map)$' -mapped-unsplit 0 -T 1e-12 -nosplit 2 -biaswt 0.0 -biaswtEnd 0.0 -biaswtOutlier 0.0 -res 3.1 -resSD 0.75 -extend 1 -BestRef 1 -BestRefPV 1 -maptype 0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -insertThreads 4 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -indel -indelends -A 8 -L 80 -S 0 -BestRef 0 -BestRefWT 1 -AddFragsWT 1 -MultiMatches 0 -refineMinWT 0.02 -hashdelta 15 10 25 -outlierType0 1 -LRbias 1e0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -nostat -biaswt 0.7 -deltaX 4 -deltaY 6 -Hash_Bits 23 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 2 -hash -mres 0.9 -hashGC 300 -hashT2 1 -hashdelta 14 10 24 -MaxSE 0.5 -outlier 1e-2 -outlierLambda 20. -endoutlier 1e-3 -Kmax 3 -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 2022-11-14 23:03:50,243:INFO:************************* Executing stage 32: alignmol ************************* 2022-11-14 23:03:50,243:INFO: Starting Multi-Threaded Process: CharacterizeF_refineFinal1 2022-11-14 23:03:50,244:INFO:conda_env=None,conda_source=None 2022-11-14 23:03:50,244:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 23:03:50,244:INFO: Starting Multi-Threaded Process: alignmol 2022-11-14 23:03:50,245:INFO:conda_env=None,conda_source=None 2022-11-14 23:03:50,245:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 23:03:50,250:INFO: START 1: CharF_refineFin, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 23:03:50,251:INFO: START 1: alignmol, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 23:10:19,008:INFO: STOP 1: alignmol, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 6.48m RunTime= 0h 6.45m CPUload=4149% saphyr1a 2022-11-14 23:10:19,009:INFO: Finished Multi-Threaded Process: alignmol 2022-11-14 23:10:59,133:INFO: STOP 1: CharF_refineFin, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 7.15m RunTime= 0h 0.64m CPUload=1995% saphyr1a 2022-11-14 23:10:59,133:INFO: Finished Multi-Threaded Process: CharacterizeF_refineFinal1 2022-11-14 23:10:59,135:INFO:Characterize refineFinal1 completed : will check Results 2022-11-14 23:10:59,135:INFO: CharF_refineFinal1 completed in: 428.9s Result Found Completed 1 jobs on 56 threads Clock time: 0h 7.15m CPU time : 0h 7.15m Begin machine parsable segment for: CharacterizeF_refineFinal1 time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_CharF_refineFinal1 428.88281 667.95 96.50 0:38.31 1995% 7748836 Mon Nov 14 17:10:58 CST 2022 2022-11-14 23:11:00,638:INFO:Stage Summary: CharacterizeF_refineFinal1 Number Genome Maps: 85 Total Genome Map Length (Mbp): 1296.079 Mean Genome Map Length (Mbp): 15.248 Median Genome Map Length (Mbp): 2.918 Genome Map N50 (Mbp): 46.108 Total Reference Length (Mbp): 675.866 Total Genome Map Length / Reference Length : 1.918 Total number of aligned Genome Maps : 38 (0.45) Total Aligned Length (Mbp) : 140.247 Total Aligned Length / Reference Length: 0.208 Total Unique Aligned Length (Mbp) : 129.113 Total Unique Aligned Length / Reference Length: 0.191 2022-11-14 23:11:00,638:INFO:Characterize refineFinal1 results check completed 2022-11-14 23:11:24,089:INFO: alignmol completed in: 388.8s Result NOT Found: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/alignmol/merge/exp_refineFinal1.err OFFENDING ARGUMENTS: ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/EXP_REFINEFINAL1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/alignmol/merge/exp_refineFinal1 -i /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx -f -stdout -stderr -maxthreads 112 -usecolor 1 -FP 1.02953 -FN 0.11663 -sf 0.14877 -sd 0.02943 -sr 0.0242 -res 2.92 -resSD 0.75 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1.errbin -bpp 504.33 -output-veto-filter '(intervals.txt|\.map)$' -mapped-unsplit 0 -T 1e-12 -nosplit 2 -biaswt 0.0 -biaswtEnd 0.0 -biaswtOutlier 0.0 -res 3.1 -resSD 0.75 -extend 1 -BestRef 1 -BestRefPV 1 -maptype 0 -PVres 2 -PVendoutlier -AlignRes 1.5 -hashrange 1 -HSDrange 1.0 -hashoffset 1 -hashMultiMatch 30 5 -insertThreads 4 -finalsort-sitesdec -RAmem 3 300 -f -MinSD 0.0 -minlen 120 -minsites 9 -minlen 150 -maxsites 750 -maxSiteDensity 30 -maxContigSiteDensity 40 -MinFN 0.1 -MinFP 2.0 -MinSD 0.0 -MinSR 0.02 -MaxSF 0.15 -MaxSD 0.12 -MaxSR 0.03 -MinRes 2.0 -MinResSD 0.8 -indel -indelends -A 8 -L 80 -S 0 -BestRef 0 -BestRefWT 1 -AddFragsWT 1 -MultiMatches 0 -refineMinWT 0.02 -hashdelta 15 10 25 -outlierType0 1 -LRbias 1e0 -MinMapwt 0.2 0.2 -XMAPmapWT 1 -nostat -biaswt 0.7 -deltaX 4 -deltaY 6 -Hash_Bits 23 -hashgen 5 4 2.4 1.4 0.05 5.0 1 1 2 -hash -mres 0.9 -hashGC 300 -hashT2 1 -hashdelta 14 10 24 -MaxSE 0.5 -outlier 1e-2 -outlierLambda 20. -endoutlier 1e-3 -Kmax 3 -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 && date Completed 1 jobs on 56 threads Clock time: 0h 6.48m CPU time : 0h 6.48m Begin machine parsable segment for: alignmol time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_alignmol 388.75573 15731.48 319.32 6:26.82 4149% 31398372 Mon Nov 14 17:10:17 CST 2022 2022-11-14 23:11:24,090:INFO:Waiting for all threads to complete 2022-11-14 23:11:24,091:INFO:conf.output_contig_prefix saved as oldoutput_contig_prefix = exp_refineFinal1 2022-11-14 23:11:24,092:INFO:svdetect.init : conf.output_contig_folder saved as src_contig_folder = /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1 2022-11-14 23:11:24,093:INFO:copying merged CMAP /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/EXP_REFINEFINAL1.cmap to output folder: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv 2022-11-14 23:11:24,127:INFO:SV mask BED file not provided. Not copying it 2022-11-14 23:11:24,127:INFO:Generating jobs for svdetect_exp_refineFinal1_sv 2022-11-14 23:11:24,128:INFO:svdetect_exp_refineFinal1_sv ${TIME_BINARY:=/usr/bin/time} -f "%U %S %E %P %M" /home/bionano/tools/pipeline/1.0/RefAligner/1.0/RefAligner${BINARY_SUFFIX:=} -ref /home/bionano/access/local/jobs/10230251/output/ref/Musa_Calcutta4_EXP_REFINEFINAL1.cmap -maxthreads 112 -i /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/EXP_REFINEFINAL1.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/EXP_REFINEFINAL1 -f -stdout -stderr -output-veto-filter '(intervals.txt|\.map|\.maprate)$' -sv 3 -FP 0.2 -FN 0.01 -sf 0.10 -sd 0.0 -sr 0.01 -MinFN 0.01 -MinFP 0.16 -MinSF 0.10 -MinSD 0.0 -MaxSD 0.0 -MinSR 0.01 -MaxSE 0.5 -MinRes 2.0 -MinResSD 0.8 -hashSF 0.0 1.0 -hashSD 0.0 1.0 -hashSR 0.0 1.0 -mres 1e-3 -S 0.1 -T 1e-12 -indelMinConf 12 -A 13 -L 60 -KL 1.5 -KF 1.5 -thetaScale 0.5 -RepeatMask 2 0.01 -RepeatRec 0.6 0.6 1.4 2 0.9 -hashgen 5 8 2.4 1.4 0.05 3.0 1 1 2 -hash -hashdelta 43 16 75 -hashoffset 1 -hashrange 0 -hashGC 300 -hashT2 1 -hashkeys 1 -hashGrouped 6 8 -hashMultiMatch 50 -insertThreads 4 -nosplit 2 -indel -outlierBC -outlierExtend 12 120 -f -AlignRes 2.5 -ErrDist 2.0 -HSDrange 2.0 0.8 -Kmax 4 -MultiMatches 8 1e-3 0.1 7 10.0 -MultiMatchesDelta 50.0 -MultiMatchesFilter 2 -endoutlier 3e-2 -outlier 3e-4 -CutFlip 5 0.2 1 10 1e-2 -9.9 1e-3 -9.9 3 -CutFlipMerge 1e-6 -InversionNormalPV 1e-10 -OverlapFilter 0.7 2.0 0.50 -InversionOverlapFilter 0.7 15.0 0.50 -CutFlipSkip 30 -CutFlipFilter 0.50 0.70 0.99 5.0 -MergeMG 500 -CutFlipBC 1 -MultiMatchesRev 1 -RefSplitStitch 1 -SmallDupFilter 0.2 0.8 0.2 1e-3 -CutFlipInvDup 5 0.5 -svDupSplit 3 30 3 140 5 2 -svInvDup_minRefOverlapFrac 0.5 -svDup_maxQryGapMult 0.8 -svDup_minRefOverlapSites 3 -MultiMatchesTotScore 2 12.0 -svIndelConfBySize 1 -svSmallDelConfirm 2.5 -svInvDup_maxQryGapMult 3.0 -svPrimaryOrientation 2.0 -svGapOverlapRatio 0.7 -svIndelRangeExpand 0.6 1.6 0.3 -svInv_TrimFrac 0.2 0.5 -PVres 2 -RefSplit 1e-4 14 1e-3 -deltaX 12 -deltaY 12 -extend 1 -resEstimate -rres 0.9 -xmapUnique 5 -indelNoOverlap 3 -xmapchim 14 2000 -xmaplen -outlierType1 0 -outlierLambda 10 -svSideMinLen 20.0 -biaswt 0.2 -biaswtEnd 0.0 -biaswtOutlier 0.0 -svAlignConfByLen 0 -svMinConf 1 -svFreq 1 -svTransOrient 1 -svAlignConfByInterval 0.7 -svTerminalIndel 1 11 10 -finalsort-sitesdec -RAmem 3 1 0.8 -maxmem 248 -maxmemIncrease 16 -maxvirtmem 0 -FP 0.4375 -FN 0.01533 -sf 0.1 -sd 0.0 -bpp 442.41 -res 2.0 -sr 0.01809 -readparameters /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1/alignref_final/EXP_REFINEFINAL1.errbin 2022-11-14 23:11:24,129:INFO: Starting Multi-Threaded Process: svdetect_exp_refineFinal1_sv 2022-11-14 23:11:24,129:INFO:conda_env=None,conda_source=None 2022-11-14 23:11:24,129:INFO: Running 1 jobs with 56 threads, sleepTime=0.01 2022-11-14 23:11:24,146:INFO: START 1: SV_detect, 56 Thr, 1 R, 1 T, 0 F, 0 Q 2022-11-14 23:11:55,122:INFO: STOP 1: SV_detect, 56 Thr, 0 R, 1 T, 1 F, 0 Q TotalTime= 0h 0.52m RunTime= 0h 0.50m CPUload=396% saphyr1a 2022-11-14 23:11:55,124:INFO: Finished Multi-Threaded Process: svdetect_exp_refineFinal1_sv 2022-11-14 23:11:55,125:INFO:Checking the results of SV detection 2022-11-14 23:11:55,132:INFO: SV_detect completed in: 31.0s Result Found Completed 1 jobs on 56 threads Clock time: 0h 0.52m CPU time : 0h 0.52m Begin machine parsable segment for: svdetect_exp_refineFinal1_sv time_header Job Qtime Usr Sys Elpsd CPU MaxMem EndTime time_line jobs+10230251+startPipeline_SV_detect 30.97612 105.27 12.49 0:29.69 396% 3405604 Mon Nov 14 17:11:54 CST 2022 2022-11-14 23:11:55,133:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/EXP_REFINEFINAL1.smap 2022-11-14 23:11:55,165:INFO:SV detect: svdetect_exp_refineFinal1_sv 2022-11-14 23:11:55,165:INFO:Full SV summary: 2022-11-14 23:11:55,165:INFO: SV type : N : N/tot complex : 24 : 0.0294 deletion : 306 : 0.3745 deletion_tiny : 34 : 0.0416 duplication : 4 : 0.0049 end : 24 : 0.0294 insertion : 345 : 0.4223 insertion_tiny : 42 : 0.0514 inversion : 9 : 0.0110 inversion_paired : 2 : 0.0024 inversion_partial : 10 : 0.0122 inversion_repeat : 1 : 0.0012 translocation_interchr : 15 : 0.0184 translocation_intrachr : 1 : 0.0012 Total number of SVs: 817 2022-11-14 23:11:55,258:INFO:merging smaps to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps 2022-11-14 23:11:55,261:INFO:merging filtered smaps: 1 files 2022-11-14 23:11:55,261:INFO:Writing merged smap: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter.smap 2022-11-14 23:11:55,262:INFO:merging 1 XMAP files 2022-11-14 23:11:55,262:INFO:Writing merged xmap: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged.xmap 2022-11-14 23:11:55,262:INFO:Converting smap /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter.smap to bed 2022-11-14 23:11:55,267:INFO:writing bed file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter.bed 2022-11-14 23:11:55,267:INFO:writing bed file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_query.bed 2022-11-14 23:11:55,268:INFO: 2022-11-14 23:11:55,284:INFO:Starting alignment Align Stats stage for alignmol 2022-11-14 23:11:55,284:INFO:totAssemblyLenMb : reflen= 1296.0786659 2022-11-14 23:11:55,284:INFO:Molecule statistics 2022-11-14 23:11:57,778:INFO:Molecule Stats (/home/bionano/access/local/jobs/10230251/output/contigs/auto_noise/autoNoise1_rescaled.bnx): Raw coverage of assembly (X): 195.383 2022-11-14 23:12:02,408:INFO:Molecules aligned to assembly: Total number of aligned molecules : 656111 Fraction of aligned molecules : 0.889 Total molecule align length (Mbp) : 192338.7 Total assembly align length (Mbp) : 193205.7 Effective coverage of assembly (X): 149.069 Average aligned length (kbp) : 293.1 Fraction aligned length : 0.760 Average confidence : 36.3 2022-11-14 23:12:02,421:INFO:Finished alignment Align Stats stage for alignmol 2022-11-14 23:12:02,422:INFO:Getting inferred sex information 2022-11-14 23:12:02,422:INFO:The inferred sex of the sample based on copy number analysis is NA 2022-11-14 23:12:02,422:WARNING:skipping filtering smap by sex because NA is invalid for sex 2022-11-14 23:12:02,422:INFO:Running the new confidence scores for translocations and inversions 2022-11-14 23:12:04,333:INFO:Recovering the name of the SV detection files 2022-11-14 23:12:04,337:INFO:Molecules aligned to reference: ['Molecules aligned to reference:\n', 'Total number of aligned molecules : 1355\n', 'Fraction of aligned molecules : 0.002\n', 'Total molecule align length (Mbp) : 170.4\n', 'Total reference align length (Mbp) : 174.6\n', 'Effective coverage of reference (X): 0.258\n', 'Average aligned length (kbp) : 125.8\n', 'Fraction aligned length : 0.001\n', 'Average confidence : 12.7\n'] 2022-11-14 23:12:04,340:INFO:svconfmodels version: Unknown. The version file created during installation was not found. This will not affect the pipeline run. It just means that there is no version information. 2022-11-14 23:12:04,341:INFO:pybionano version: Unknown 2022-11-14 23:12:04,341:INFO:Confidence scores for translocations and inversions. Pipeline: denovo 2022-11-14 23:12:04,341:INFO:Reading configuration file /home/bionano2/.bionano/svconfmodels_non_human.yml 2022-11-14 23:12:04,342:INFO:Configuration: 2022-11-14 23:12:04,342:INFO:{ "reference": { "species": "non_human", "genome_release": null, "centromeres": null, "segmental_duplications": null, "unknown_sequence_gaps": null, "chromosome_sizes": null }, "confidence_models": { "rvp": { "translocations": { "version": "0.5.0", "model": "/home/bionano2/.conda/envs/bionano3/lib/python3.7/site-packages/svconfmodels/models/models_data/2020-06-19-LGBM_v2.3.0_TranslocationsNonHuman_both_v0.5.0.joblib" }, "inversions": { "version": "0.5.0", "model": "/home/bionano2/.conda/envs/bionano3/lib/python3.7/site-packages/svconfmodels/models/models_data/2020-06-19-LGBM_v2.3.0_InversionsNonHuman_both_v0.5.0.joblib" }, "indels": { "version": "0.5.1", "model": "/home/bionano2/.conda/envs/bionano3/lib/python3.7/site-packages/svconfmodels/models/models_data/2020-08-14-LGBM_v2.3.0_IndelsNonHuman_both_v0.5.1.joblib" } }, "denovo": { "translocations": { "version": "0.5.0", "model": "/home/bionano2/.conda/envs/bionano3/lib/python3.7/site-packages/svconfmodels/models/models_data/2020-06-19-LGBM_v2.3.0_TranslocationsNonHuman_both_v0.5.0.joblib" }, "inversions": { "version": "0.5.0", "model": "/home/bionano2/.conda/envs/bionano3/lib/python3.7/site-packages/svconfmodels/models/models_data/2020-06-19-LGBM_v2.3.0_InversionsNonHuman_both_v0.5.0.joblib" }, "indels": { "version": "0.5.1", "model": "/home/bionano2/.conda/envs/bionano3/lib/python3.7/site-packages/svconfmodels/models/models_data/2020-08-14-LGBM_v2.3.0_IndelsNonHuman_both_v0.5.1.joblib" } } } } 2022-11-14 23:12:04,343:INFO:Loading the model used to create confidence scores 2022-11-14 23:12:04,343:INFO:Loading translocations model 2022-11-14 23:12:04,382:INFO:Checking all the model input files 2022-11-14 23:12:04,382:INFO:Checking all the model input files 2022-11-14 23:12:04,382:INFO:Calcuating model features from the Smap file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap 2022-11-14 23:12:04,383:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap 2022-11-14 23:12:04,399:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_q.cmap 2022-11-14 23:12:04,582:INFO:Reading the informatics report file: /home/bionano/access/local/jobs/10230251/output/exp_temp_informatics_report.txt. Pipeline: denovo 2022-11-14 23:12:04,583:INFO:Calculating translocation features 2022-11-14 23:12:04,589:INFO:Calculating coverage statistics for the molecules forming the assembled consensus maps 2022-11-14 23:12:05,243:INFO:Adding features derived from the informatics report file /home/bionano/access/local/jobs/10230251/output/exp_temp_informatics_report.txt 2022-11-14 23:12:05,249:INFO:Saving file of translocation features to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap_translocations.tsv 2022-11-14 23:12:05,251:INFO:Finished calculating translocation features 2022-11-14 23:12:05,252:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_r.cmap 2022-11-14 23:12:05,352:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged.xmap 2022-11-14 23:12:05,536:INFO:Calculating inversion featues 2022-11-14 23:12:05,537:INFO:Merging inversion lines 2022-11-14 23:12:05,599:INFO:Adding inversion features for non-human species 2022-11-14 23:12:05,720:INFO:Feature: Flanking labels unaligned in the reference map 2022-11-14 23:12:05,817:INFO:Features derived from the statistics in the region of the query map that has the inverted material 2022-11-14 23:12:06,589:INFO:Adding features derived from the informatics report file /home/bionano/access/local/jobs/10230251/output/exp_temp_informatics_report.txt 2022-11-14 23:12:06,599:INFO:Saving file of inversion features to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap_inversions.tsv 2022-11-14 23:12:06,602:INFO:Finished calculation inversion features 2022-11-14 23:12:06,603:INFO:Saving intermediate file with inversions as one-liners 2022-11-14 23:12:06,603:INFO:Merging inversion lines 2022-11-14 23:12:06,735:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap 2022-11-14 23:12:06,747:INFO:Reading file of translocation features /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap_translocations.tsv 2022-11-14 23:12:06,751:INFO:Scoring a dataframe of translocations. Shape: (16, 41) 2022-11-14 23:12:06,887:INFO:Reading file of inversion features /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap_inversions.tsv 2022-11-14 23:12:06,899:INFO:Scoring inversions (20, 69) 2022-11-14 23:12:06,899:INFO:Scoring a dataframe of inversions. Shape: (20, 69) 2022-11-14 23:12:07,071:INFO:Finished applying confidence scores to /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap. Checking existence and correctness of results 2022-11-14 23:12:07,075:INFO:Saving file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions_scored.smap 2022-11-14 23:12:07,093:INFO:The calculation of the confidence scores for translocations and inversions finished successfully 2022-11-14 23:12:07,093:INFO:The file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap now contains the updated scores. A pre-scoring copy of the file was saved as /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap.pre_confscores_backup 2022-11-14 23:12:07,100:INFO:Recovering the name of the SV detection files 2022-11-14 23:12:07,101:INFO:Running the variant allele fraction calculation 2022-11-14 23:12:07,101:INFO:Starting variant clustering 2022-11-14 23:12:07,101:INFO:Output directory /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/redundancy_removal 2022-11-14 23:12:07,695:INFO:Clustering successfully completed 2022-11-14 23:12:07,696:INFO:Reading file of clustered variants: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/redundancy_removal/exp_cluster_molecule_variant.txt 2022-11-14 23:12:07,697:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/redundancy_removal/exp_cluster_molecule_variant.txt 2022-11-14 23:12:07,736:INFO:Reading summary file of cluster descriptions /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/redundancy_removal/exp_cluster_molecule_variant_summary.txt 2022-11-14 23:12:07,736:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/redundancy_removal/exp_cluster_molecule_variant_summary.txt 2022-11-14 23:12:07,742:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged.xmap 2022-11-14 23:12:07,760:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_q.cmap 2022-11-14 23:12:07,958:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_r.cmap 2022-11-14 23:12:08,088:INFO:Creating an AlignmentTable instance. Query CMAP entries: 144880. Reference CMAP entries: 122494. Alignments XMAP entries: 492 2022-11-14 23:12:08,250:INFO:VAF for duplications ... 2022-11-14 23:12:08,480:INFO:All duplications processed 2022-11-14 23:12:08,485:INFO:VAF for non duplications ... 2022-11-14 23:12:13,104:INFO:Clusters processed: 100 2022-11-14 23:12:16,767:INFO:Clusters processed: 200 2022-11-14 23:12:20,538:INFO:Clusters processed: 300 2022-11-14 23:12:24,539:INFO:Clusters processed: 400 2022-11-14 23:12:28,311:INFO:Clusters processed: 500 2022-11-14 23:12:32,205:INFO:Clusters processed: 600 2022-11-14 23:12:35,630:INFO:All clusters processed 2022-11-14 23:12:35,635:INFO:Reading summary file of cluster descriptions 2022-11-14 23:12:35,650:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap 2022-11-14 23:12:35,668:INFO:Saving file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions_vaf.smap 2022-11-14 23:12:35,677:INFO:Reading configuration file /home/bionano2/.bionano/pybionano_other.yml 2022-11-14 23:12:35,678:INFO:Configuration: 2022-11-14 23:12:35,678:INFO:{ "reference": { "species": "non_human", "genome_release": null, "centromeres": null, "chromosome_sizes": null } } 2022-11-14 23:12:35,987:INFO:Saving file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/WholeGenomeVAFPlotSegments.tsv 2022-11-14 23:12:35,991:INFO:The VAF calculations ran successfully. The output file is: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap 2022-11-14 23:12:35,992:INFO:Adding counts of variants to the informatics report 2022-11-14 23:12:35,992:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap 2022-11-14 23:12:36,009:INFO:Filtered SV summary (Entries with low confidence for the SV calls, except duplications, are filtered out) 2022-11-14 23:12:36,009:INFO: SV type : N : N/tot deletion : 288 : 0.4608 duplication : 4 : 0.0064 insertion : 309 : 0.4944 inversion : 3 : 0.0048 inversion_paired : 2 : 0.0032 inversion_partial : 3 : 0.0048 translocation_interchr : 15 : 0.0240 translocation_intrachr : 1 : 0.0016 Total number of SVs: 625 2022-11-14 23:12:36,012:INFO:Saving file /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions_confidence_filtered.temp 2022-11-14 23:12:36,024:INFO:Starting variant clustering 2022-11-14 23:12:36,024:INFO:Output directory /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps 2022-11-14 23:12:36,443:INFO:Clustering successfully completed 2022-11-14 23:12:36,443:INFO:Reading summary file of cluster descriptions /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_cluster_molecule_variant_summary.txt 2022-11-14 23:12:36,444:INFO:Reading file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_cluster_molecule_variant_summary.txt 2022-11-14 23:12:36,451:INFO:Clustered SV summary (SVs except translocation with >50% interval overlap and >80% size overlap are collapsed; translocation calls within 35kb are collapsed): Deletions : 283 Insertions : 309 Duplications : 4 Inversion breakpoints : 4 Interchr. translocation breakpoints: 15 Intrachr. translocation breakpoints: 1 2022-11-14 23:12:36,452:INFO:Non-human species_reference parameter. LOH detection will not run 2022-11-14 23:12:36,452:INFO:Waiting for all threads to complete 2022-11-14 23:12:36,452:INFO:Finalizing pipeline 2022-11-14 23:12:36,452:INFO:Starting the stage smap2vcf 2022-11-14 23:12:36,452:INFO:Starting smap2vcf command: python3 /home/bionano/tools/pipeline/Solve3.7_03302022_283/Pipeline/03302022/Analysis/vcf_converter/bionano_vcf_converter.py -s /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions.smap -x /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged.xmap -r /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_r.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter_inversions -i exp -c /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/copynumber/cnv_calls_exp.txt -b False -a Musa_Calcutta4_EXP_REFINEFINAL1 -m 0 -u True 2022-11-14 23:12:37,806:INFO:Creating smap2vcf job log: /home/bionano/access/local/jobs/10230251/output/ClusterLogs/smap2vcf.log 2022-11-14 23:12:37,807:INFO:Starting smap2vcf command: python3 /home/bionano/tools/pipeline/Solve3.7_03302022_283/Pipeline/03302022/Analysis/vcf_converter/bionano_vcf_converter.py -s /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter.smap -x /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged.xmap -r /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_r.cmap -o /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_merged_filter -i exp -c /home/bionano/access/local/jobs/10230251/output/contigs/alignmolvref/copynumber/cnv_calls_exp.txt -b False -a Musa_Calcutta4_EXP_REFINEFINAL1 -m 0 -u True 2022-11-14 23:12:38,431:INFO:Creating smap2vcf job log: /home/bionano/access/local/jobs/10230251/output/ClusterLogs/smap2vcf.log 2022-11-14 23:12:38,432:WARNING:missing smap file: /home/bionano/access/local/jobs/10230251/output/contigs/exp_refineFinal1_sv/merged_smaps/exp_refineFinal1_sv_merged_conf_filtered.smap 2022-11-14 23:12:38,434:INFO:Molecules aligned to reference: ['Molecules aligned to reference:\n', 'Total number of aligned molecules : 1355\n', 'Fraction of aligned molecules : 0.002\n', 'Total molecule align length (Mbp) : 170.4\n', 'Total reference align length (Mbp) : 174.6\n', 'Effective coverage of reference (X): 0.258\n', 'Average aligned length (kbp) : 125.8\n', 'Fraction aligned length : 0.001\n', 'Average confidence : 12.7\n'] 2022-11-14 23:12:38,436:INFO:Parsing the file /home/bionano/access/local/jobs/10230251/output/exp_informaticsReportSimple.txt and generating report in JSON format 2022-11-14 23:12:38,437:INFO:Writing the report to /home/bionano/access/local/jobs/10230251/output/exp_informaticsReportSimple.json 2022-11-14 23:12:38,438:INFO:Pipeline end time: Mon Nov 14 23:12:38 2022 Elapsed time: 247.40m; 4.12h; 0.17d 2022-11-14 23:12:38,438:INFO:Starting compression script: /bin/bash /home/bionano/tools/pipeline/Solve3.7_03302022_283/Pipeline/03302022/compressPipeline.sh --targetFolder /home/bionano/access/local/jobs/10230251/output