# xMapId	refQry	refId	leftRefBkpt	rightRefBkpt	alignmentOrientation	ref_leftBkpt_toCut	ref_rightBkpt_toCut	ref_toDiscard	refQry	qryId	leftQryBkpt	rightQryBkpt	alignmentOrientation	qry_leftBkpt_toCut	qry_rightBkpt_toCut	qry_toDiscard
# id/-1	ref	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-	qry	id/-1	position/-1	position/-1	+/-	okay/cut/-	okay/cut/-	okay/exclude/-
0	ref	44	14267294	-1	+	okay	okay	exclude	qry	2	14268287	-1	+	okay	okay	okay
0	ref	56	-1	23865190	+	okay	okay	exclude	qry	2	-1	23892664	+	okay	okay	okay
0	ref	36	-1	26280542	+	okay	okay	exclude	qry	2	-1	26314195	+	okay	okay	okay
0	ref	113	24000283	-1	+	okay	okay	exclude	qry	2	24028329	-1	+	okay	okay	okay