# Assembly Statistics Report # Assembly name: ASM31385v2 # Organism name: Musa acuminata subsp. malaccensis (wild Malaysian banana) # Infraspecific name: strain=Doubled-haploid Pahang (DH-Pahang) # Taxid: 214687 # BioSample: SAMEA2272344 # BioProject: PRJEA82777 # Submitter: Genoscope/IG/CEA # Date: 2012-11-14 # Assembly type: haploid # Release type: minor # Assembly level: Chromosome # Genome representation: full # WGS project: CAIC01 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000313855.2 # RefSeq assembly accession: GCF_000313855.2 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000313865.2 GCF_000313865.2 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 472231289 all all all all spanned-gaps 21737 all all all all unspanned-gaps 253 all all all all region-count 0 all all all all scaffold-count 7512 all all all all scaffold-N50 1311088 all all all all scaffold-L50 65 all all all all scaffold-N75 419614 all all all all scaffold-N90 54335 all all all all contig-count 29249 all all all all contig-N50 28326 all all all all contig-L50 3427 all all all all total-gap-length 81753624 all all all all molecule-count 11 all all all all top-level-count 7259 all all all all component-count 24423 Primary Assembly all all all total-length 472231289 Primary Assembly all all all ungapped-length 390477665 Primary Assembly all all all scaffold-count 7512 Primary Assembly all all all scaffold-N50 1311088 Primary Assembly all all all spanned-gaps 21737 Primary Assembly all all all unspanned-gaps 253 Primary Assembly all all assembled-molecule total-length 331812599 Primary Assembly all all assembled-molecule ungapped-length 286824883 Primary Assembly all all assembled-molecule scaffold-count 264 Primary Assembly all all assembled-molecule scaffold-N50 3077952 Primary Assembly all all assembled-molecule spanned-gaps 13711 Primary Assembly all all assembled-molecule unspanned-gaps 253 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 140418690 Primary Assembly na na unplaced-scaffold ungapped-length 103652782 Primary Assembly na na unplaced-scaffold scaffold-count 7248 Primary Assembly na na unplaced-scaffold scaffold-N50 183001 Primary Assembly na na unplaced-scaffold spanned-gaps 8026 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 27573629 Primary Assembly 1 Chromosome all ungapped-length 24111813 Primary Assembly 1 Chromosome all scaffold-count 22 Primary Assembly 1 Chromosome all scaffold-N50 2245470 Primary Assembly 1 Chromosome all spanned-gaps 1090 Primary Assembly 1 Chromosome all unspanned-gaps 21 Primary Assembly 1 Chromosome assembled-molecule total-length 27573629 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 24111813 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 22 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 2245470 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 1090 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 21 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 22054697 Primary Assembly 2 Chromosome all ungapped-length 19091485 Primary Assembly 2 Chromosome all scaffold-count 22 Primary Assembly 2 Chromosome all scaffold-N50 1755924 Primary Assembly 2 Chromosome all spanned-gaps 920 Primary Assembly 2 Chromosome all unspanned-gaps 21 Primary Assembly 2 Chromosome assembled-molecule total-length 22054697 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 19091485 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 22 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 1755924 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 920 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 21 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 30470407 Primary Assembly 3 Chromosome all ungapped-length 26487315 Primary Assembly 3 Chromosome all scaffold-count 22 Primary Assembly 3 Chromosome all scaffold-N50 3785391 Primary Assembly 3 Chromosome all spanned-gaps 1196 Primary Assembly 3 Chromosome all unspanned-gaps 21 Primary Assembly 3 Chromosome assembled-molecule total-length 30470407 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 26487315 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 22 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 3785391 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 1196 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 21 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 30051516 Primary Assembly 4 Chromosome all ungapped-length 26706884 Primary Assembly 4 Chromosome all scaffold-count 13 Primary Assembly 4 Chromosome all scaffold-N50 8856836 Primary Assembly 4 Chromosome all spanned-gaps 1103 Primary Assembly 4 Chromosome all unspanned-gaps 12 Primary Assembly 4 Chromosome assembled-molecule total-length 30051516 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 26706884 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 13 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 8856836 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 1103 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 12 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 29377369 Primary Assembly 5 Chromosome all ungapped-length 25886748 Primary Assembly 5 Chromosome all scaffold-count 21 Primary Assembly 5 Chromosome all scaffold-N50 2773165 Primary Assembly 5 Chromosome all spanned-gaps 1200 Primary Assembly 5 Chromosome all unspanned-gaps 20 Primary Assembly 5 Chromosome assembled-molecule total-length 29377369 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 25886748 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 21 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 2773165 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 1200 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 20 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 34899179 Primary Assembly 6 Chromosome all ungapped-length 30423949 Primary Assembly 6 Chromosome all scaffold-count 30 Primary Assembly 6 Chromosome all scaffold-N50 7330853 Primary Assembly 6 Chromosome all spanned-gaps 1378 Primary Assembly 6 Chromosome all unspanned-gaps 29 Primary Assembly 6 Chromosome assembled-molecule total-length 34899179 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 30423949 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 30 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 7330853 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 1378 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 29 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 28617404 Primary Assembly 7 Chromosome all ungapped-length 24352417 Primary Assembly 7 Chromosome all scaffold-count 22 Primary Assembly 7 Chromosome all scaffold-N50 5244634 Primary Assembly 7 Chromosome all spanned-gaps 1197 Primary Assembly 7 Chromosome all unspanned-gaps 21 Primary Assembly 7 Chromosome assembled-molecule total-length 28617404 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 24352417 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 22 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 5244634 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 1197 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 21 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 35439739 Primary Assembly 8 Chromosome all ungapped-length 30434180 Primary Assembly 8 Chromosome all scaffold-count 27 Primary Assembly 8 Chromosome all scaffold-N50 2556008 Primary Assembly 8 Chromosome all spanned-gaps 1517 Primary Assembly 8 Chromosome all unspanned-gaps 26 Primary Assembly 8 Chromosome assembled-molecule total-length 35439739 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 30434180 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 27 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 2556008 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 1517 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 26 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 34148863 Primary Assembly 9 Chromosome all ungapped-length 28747484 Primary Assembly 9 Chromosome all scaffold-count 37 Primary Assembly 9 Chromosome all scaffold-N50 1544587 Primary Assembly 9 Chromosome all spanned-gaps 1553 Primary Assembly 9 Chromosome all unspanned-gaps 36 Primary Assembly 9 Chromosome assembled-molecule total-length 34148863 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 28747484 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 37 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 1544587 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 1553 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 36 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 33665772 Primary Assembly 10 Chromosome all ungapped-length 27908620 Primary Assembly 10 Chromosome all scaffold-count 33 Primary Assembly 10 Chromosome all scaffold-N50 1266487 Primary Assembly 10 Chromosome all spanned-gaps 1518 Primary Assembly 10 Chromosome all unspanned-gaps 32 Primary Assembly 10 Chromosome assembled-molecule total-length 33665772 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 27908620 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 33 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 1266487 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 1518 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 32 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 25514024 Primary Assembly 11 Chromosome all ungapped-length 22673988 Primary Assembly 11 Chromosome all scaffold-count 15 Primary Assembly 11 Chromosome all scaffold-N50 7530813 Primary Assembly 11 Chromosome all spanned-gaps 1039 Primary Assembly 11 Chromosome all unspanned-gaps 14 Primary Assembly 11 Chromosome assembled-molecule total-length 25514024 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 22673988 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 15 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 7530813 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 1039 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 14 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0